Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003854

Physical Location & Seq

Genomic Coordinates Forward (+)

30547991 .. 30550100

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0173400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTGTTTAACAAGTTTGGGCAGCCGGTTGCACCAGCTGAAACTGTTGCAAGGTTCTCAAGGTATGTAGGATCACTTGCAAGAGAACCTTCTATGTTTCCAATCAATGTACCTGACTTCAAGAATTTTAAAGGGACCGGAAGGGTTGAAAGTGCATGGGCAGAAATAAAGGAAAAAATAGATTGGTCTGAGCCACAAACTTTGGCAATTATGAAAAGAATTCAGAAGTTGGAATTGGATAAGCTTGAGCAAAGGGAGCACTTAAATGGTAGGGAACTCACTATAGACTTATTGAATGAATTGTTTTGTGAGCAATTTGGACCAGAGACATATAATGCAGTTCGAGGGTATGGACTGGGAGTAGAGTGGGTTGATGTTCCTGGAATACAAACTGCAAAGCCAGCAGTTTCTTACGATGTAGCATCACTTCAGTATGAACTTGAAGCCTCACTTGCTGAGATCACGAGGTTGACAGCGGTAGCTAGCAGCCAAAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

DIRP Myb_DNA-binding

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

5.17

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21430 AT3G21430 AT3G21430
fragaria_vesca	FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660
malus_domestica	MD16G1172500.v1.1 MD16G1172600.v1.1
prunus_persica	Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1
pyrus_communis	pycom16g14470
rosa_chinensis	RchiOBHm_Chr4g0421601
rosa_laevigata	RLG00000007665 RLG00000008391
rosa_multiflora	Rmu_ssc0000097.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363850
rosa_rugosa	Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700
rosa_samantha	Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200
rosa_wichuraiana	Rw4G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	124, 219
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	121, 149, 295, 443
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	38, 244, 482
AluI	AGCT	3 cut(s)	38, 244, 482
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	22, 486
ApoI	RAATTY	2 cut(s)	124, 219
AspS9I	GGNCC	2 cut(s)	135, 320
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	135, 320
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BauI	CACGAG	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	23, 487
BlsI	GCNGC	2 cut(s)	24, 488
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	2 cut(s)	135, 320
BmgT120I	GGNCC	2 cut(s)	135, 320
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	431
BmtI	GCTAGC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	43, 266
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	180, 447
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	26, 138
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	71, 459
BspACI	CCGC	1 cut(s)	476
BspCNI	CTCAG	2 cut(s)	181, 448
BspLI	GGNNCC	1 cut(s)	136
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	2 cut(s)	71, 459
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	402, 484
BstDEI	CTNAG	2 cut(s)	189, 456
BstKTI	GATC	2 cut(s)	74, 462
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	71, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 401, 452
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	402, 484
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	135, 320
Csp6I	GTAC	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	8 cut(s)	25, 38, 193, 244, 400, 446, 482, 489
CviKI_1	RGCY	8 cut(s)	25, 38, 193, 244, 400, 446, 482, 489
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	189, 456
DpnI	GATC	2 cut(s)	73, 461
DpnII	GATC	2 cut(s)	71, 459
DraI	TTTAAA	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	135, 320
Eco57I	CTGAAG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	159
FaiI	YATR	9 cut(s)	66, 95, 157, 212, 284, 331, 333, 351, 435
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 435, 467
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	23, 487
Fsp4HI	GCNGC	2 cut(s)	23, 487
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	2 cut(s)	23, 487
HapII	CCGG	2 cut(s)	26, 138
Hin1II	CATG	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	242
HpaII	CCGG	2 cut(s)	26, 138
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	2 cut(s)	190, 225
Hpy188III	TCNNGA	2 cut(s)	121, 463
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	99, 135
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	6 cut(s)	32, 50, 80, 155, 338, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 401, 452
HpyF3I	CTNAG	2 cut(s)	189, 456
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	71, 459
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	39, 48, 126, 151, 336, 341, 366, 393, 414
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	483
MalI	GATC	2 cut(s)	73, 461
MboI	GATC	2 cut(s)	71, 459
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	6 cut(s)	124, 207, 219, 233, 299, 314
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	338, 457, 459
MseI	TTAA	3 cut(s)	9, 129, 263
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	38, 476
MspI	CCGG	2 cut(s)	26, 138
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	256, 401, 452
NdeII	GATC	2 cut(s)	71, 459
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	24, 488
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	135, 320
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	9, 129, 263
SatI	GCNGC	2 cut(s)	23, 487
Sau3AI	GATC	2 cut(s)	71, 459
Sau96I	GGNCC	2 cut(s)	135, 320
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	40, 56, 65, 91, 115, 246, 470, 484
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	135, 320
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	58, 245
SmoI	CTYRAG	2 cut(s)	58, 245
Sse9I	AATT	6 cut(s)	124, 207, 219, 233, 299, 314
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	343
TasI	AATT	6 cut(s)	124, 207, 219, 233, 299, 314
Tru1I	TTAA	3 cut(s)	9, 129, 263
Tru9I	TTAA	3 cut(s)	9, 129, 263
TseI	GCWGC	2 cut(s)	22, 486
TspDTI	ATGAA	3 cut(s)	227, 312, 450
VpaK11BI	GGWCC	2 cut(s)	135, 320
XapI	RAATTY	2 cut(s)	124, 219
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.