Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003854

Physical Location & Seq

Genomic Coordinates Reverse (-)

14517406 .. 14519110

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1172500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAATGATGAGGTGGTGGAAAACCATAGAGATGGAGACAACTTCATCAGGGATTCTGAGTCTTTTAAAAAGGAATATGCTGCAGTGCTCTTACAGTTGAGTCAAGTCAATGATCAGGTTTCTTCTGCTCTTTGTTGCTTAAGACAGCGCAACACATATAGAGGGAGTCCCGCAGTTAGCTTGGTGAAGCCCATGGAAAATATAAGCGACCCTGGTGGCCATTCAAGCCCTTCTGGTTATTCTTGTCATGCCCAAGAATCGGCAGGTCATGTGTTTGATATTGTTGAAAGTTCAAGAGCAAAAGCCCGCAAAATGGTTGATGCAGCTATGCAGGCAATTTCATCATTGAGGAAGGAAGATAACCTTGATAGGATGGAGGAGATTATAGACTTTGTTAGTAATCGGCTTTCTGATGATGCTGGCGTGCTGGGACCTTCTACTACCCCTGCAGATCCAGTTCGGGTTTCTCAAGATCAGCCAACTGCCTGTACATCAAAACCAATGGAAACGAGTTGTTCAGCTGATCCTAAGTCAAATAACGTATCGAAGCGAAATGAAGAAAAAGCCCTTACAGACCTTATTGTAAATTGTGTAGCAGCGTTTTTGATGATTCAGACATGTACAGCGCGACAGTTTCCACCGTCTGAAGTCGCCCAGGTATTAGACGAAGCCGTGACTAGTTTGCAGCCACTTTGTCCGCAGAACCTTTCGGTTTACGGAGAAATACAGAAGTGCATGGGCATTATTAGGAACCAGATACTAGCGTTGGTGCCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

DIRP Myb_DNA-binding

Protein Analysis

260

Amino Acids

28.25

Weight (kDa)

5.0

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21430 AT3G21430 AT3G21430
fragaria_vesca	FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660
malus_domestica	MD16G1172500.v1.1 MD16G1172600.v1.1
prunus_persica	Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1
pyrus_communis	pycom16g14470
rosa_chinensis	RchiOBHm_Chr4g0421601
rosa_laevigata	RLG00000007665 RLG00000008391
rosa_multiflora	Rmu_ssc0000097.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363850
rosa_rugosa	Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700
rosa_samantha	Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200
rosa_wichuraiana	Rw4G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	769
AccII	CGCG	1 cut(s)	628
AciI	CCGC	3 cut(s)	171, 307, 698
AclWI	GGATC	2 cut(s)	446, 518
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	490, 622
AfiI	CCNNNNNNNGG	2 cut(s)	259, 313
AflII	CTTAAG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	225, 287, 294
AhlI	ACTAGT	1 cut(s)	677
AjnI	CCWGG	2 cut(s)	211, 654
AluBI	AGCT	3 cut(s)	180, 326, 521
AluI	AGCT	3 cut(s)	180, 326, 521
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	446, 518
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	4 cut(s)	80, 323, 596, 685
AspLEI	GCGC	2 cut(s)	150, 628
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	769
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	67, 335, 608, 697
BccI	CCATC	2 cut(s)	26, 367
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	2 cut(s)	213, 656
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	30
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	2 cut(s)	678, 761
BfmI	CTRYAG	2 cut(s)	81, 447
BfrI	CTTAAG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	81, 324, 597, 686
BlsI	GCNGC	4 cut(s)	82, 325, 598, 687
Bme1390I	CCNGG	2 cut(s)	213, 656
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	432, 752, 771
BmrFI	CCNGG	2 cut(s)	213, 656
BmsI	GCATC	2 cut(s)	310, 406
BpuEI	CTTGAG	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	192, 211, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 313
Bse1I	ACTGG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	213, 656
BseDI	CCNNGG	3 cut(s)	192, 211, 654
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	259, 313
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	67, 335, 608, 697
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	153, 444
BslI	CCNNNNNNNGG	2 cut(s)	259, 313
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	153, 444
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	2 cut(s)	488, 620
Bsp143I	GATC	4 cut(s)	112, 451, 472, 523
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	3 cut(s)	171, 307, 698
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	3 cut(s)	432, 752, 771
BspMAI	CTGCAG	2 cut(s)	85, 451
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	446, 518
BspT107I	GGYRCC	1 cut(s)	769
BspTI	CTTAAG	1 cut(s)	139
BsrGI	TGTACA	2 cut(s)	488, 620
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	192, 211, 654
BssMI	GATC	4 cut(s)	112, 451, 472, 523
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	213, 656
Bst4CI	ACNGT	3 cut(s)	96, 633, 642
BstAFI	CTTAAG	1 cut(s)	139
BstAUI	TGTACA	2 cut(s)	488, 620
BstC8I	GCNNGC	4 cut(s)	307, 333, 421, 425
BstDEI	CTNAG	2 cut(s)	57, 528
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	150, 628
BstKTI	GATC	4 cut(s)	115, 454, 475, 526
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	112, 451, 472, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 332
BstNI	CCWGG	2 cut(s)	213, 656
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	211, 654
BstSFI	CTRYAG	2 cut(s)	81, 447
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	4 cut(s)	67, 335, 608, 697
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	4 cut(s)	307, 333, 421, 425
CfoI	GCGC	2 cut(s)	150, 628
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	489, 621
CviAII	CATG	5 cut(s)	193, 248, 269, 618, 736
CviQI	GTAC	2 cut(s)	489, 621
DdeI	CTNAG	2 cut(s)	57, 528
DpnI	GATC	4 cut(s)	114, 453, 474, 525
DpnII	GATC	4 cut(s)	112, 451, 472, 523
DraI	TTTAAA	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	211, 654
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	196, 251, 272, 621, 739
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	2 cut(s)	153, 444
FatI	CATG	5 cut(s)	192, 247, 268, 617, 735
FauI	CCCGC	2 cut(s)	178, 314
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	81, 324, 597, 686
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	4 cut(s)	81, 324, 597, 686
FspBI	CTAG	2 cut(s)	678, 761
GlaI	GCGC	2 cut(s)	149, 627
GluI	GCNGC	4 cut(s)	81, 324, 597, 686
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	219
HhaI	GCGC	2 cut(s)	150, 628
Hin1II	CATG	5 cut(s)	196, 251, 272, 621, 739
Hin6I	GCGC	2 cut(s)	148, 626
HinP1I	GCGC	2 cut(s)	148, 626
HinfI	GANTC	6 cut(s)	53, 59, 100, 166, 257, 610
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	4 cut(s)	58, 412, 615, 646
Hpy188III	TCNNGA	2 cut(s)	294, 470
Hpy8I	GTNNAC	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	240, 346, 444
HpyCH4III	ACNGT	3 cut(s)	96, 633, 642
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	6 cut(s)	83, 323, 331, 449, 685, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 332
HpyF3I	CTNAG	2 cut(s)	57, 528
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	196, 251, 272, 621, 739
HspAI	GCGC	2 cut(s)	148, 626
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 451, 472, 523
Lsp1109I	GCAGC	4 cut(s)	67, 335, 608, 697
LweI	GCATC	2 cut(s)	310, 406
MaeI	CTAG	2 cut(s)	678, 761
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	4 cut(s)	114, 453, 474, 525
MboI	GATC	4 cut(s)	112, 451, 472, 523
MboII	GAAGA	3 cut(s)	114, 368, 569
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	2 cut(s)	336, 586
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	68, 109, 175
MnlI	CCTC	4 cut(s)	4, 155, 342, 370
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	66, 140
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	213, 656
MvaI	CCWGG	2 cut(s)	213, 656
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	225, 332
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	112, 451, 472, 523
NlaIII	CATG	5 cut(s)	196, 251, 272, 621, 739
NlaIV	GGNNCC	3 cut(s)	432, 752, 771
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	621
PciI	ACATGT	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	53, 257, 610
PkrI	GCNGC	4 cut(s)	82, 325, 598, 687
PleI	GAGTC	3 cut(s)	67, 108, 174
PpsI	GAGTC	3 cut(s)	67, 108, 174
PpuMI	RGGWCCY	1 cut(s)	431
PscI	ACATGT	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	211, 654
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	211, 654
PspN4I	GGNNCC	3 cut(s)	432, 752, 771
PspPI	GGNCC	1 cut(s)	431
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	2 cut(s)	85, 451
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	490, 622
RsaNI	GTAC	2 cut(s)	489, 621
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	66, 140
SatI	GCNGC	4 cut(s)	81, 324, 597, 686
Sau3AI	GATC	4 cut(s)	112, 451, 472, 523
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	3 cut(s)	68, 109, 175
ScrFI	CCNGG	2 cut(s)	213, 656
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	310, 406
SfcI	CTRYAG	2 cut(s)	81, 447
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	139, 468
SmoI	CTYRAG	2 cut(s)	139, 468
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	2 cut(s)	336, 586
SsiI	CCGC	3 cut(s)	171, 307, 698
SspMI	CTAG	2 cut(s)	678, 761
StyD4I	CCNGG	2 cut(s)	211, 654
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	96, 633, 642
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	336, 586
TatI	WGTACW	2 cut(s)	488, 620
TfiI	GAWTC	3 cut(s)	53, 257, 610
Tru1I	TTAA	2 cut(s)	66, 140
Tru9I	TTAA	2 cut(s)	66, 140
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	4 cut(s)	80, 323, 596, 685
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	17, 34, 330, 570
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	431
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	2 cut(s)	678, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.