Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 634 |
| Acc36I | ACCTGC | 2 cut(s) | 634, 2332 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 487, 1325 |
| AccI | GTMKAC | 1 cut(s) | 2223 |
| AccII | CGCG | 1 cut(s) | 2670 |
| AciI | CCGC | 6 cut(s) | 37, 858, 1662, 1858, 2885, 3359 |
| AclWI | GGATC | 6 cut(s) | 1947, 2191, 3157, 3164, 3198, 3236 |
| AcoI | YGGCCR | 1 cut(s) | 1671 |
| AcsI | RAATTY | 2 cut(s) | 160, 2317 |
| AcuI | CTGAAG | 3 cut(s) | 539, 906, 1254 |
| AcyI | GRCGYC | 1 cut(s) | 743 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 232, 487, 1325, 1562, 2264 |
| AflII | CTTAAG | 1 cut(s) | 2375 |
| AflIII | ACRYGT | 4 cut(s) | 123, 1021, 1261, 3338 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 508, 2165 |
| AhlI | ACTAGT | 2 cut(s) | 497, 3398 |
| AjnI | CCWGG | 9 cut(s) | 629, 827, 1324, 2183, 2566, 2826, 2923, 3186, 3375 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3166, 3198 |
| AleI | CACNNNNGTG | 1 cut(s) | 336 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1365, 1397 |
| Alw21I | GWGCWC | 5 cut(s) | 2003, 2385, 2462, 2882, 3238 |
| Alw26I | GTCTC | 3 cut(s) | 72, 1752, 2848 |
| Alw44I | GTGCAC | 1 cut(s) | 3234 |
| AlwI | GGATC | 6 cut(s) | 1947, 2191, 3157, 3164, 3198, 3236 |
| Ama87I | CYCGRG | 2 cut(s) | 570, 2586 |
| ApaLI | GTGCAC | 1 cut(s) | 3234 |
| ApeKI | GCWGC | 7 cut(s) | 59, 1238, 1402, 2792, 3035, 3317, 3406 |
| ApoI | RAATTY | 2 cut(s) | 160, 2317 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 934, 966 |
| AseI | ATTAAT | 1 cut(s) | 2391 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 616 |
| AspLEI | GCGC | 4 cut(s) | 531, 2672, 2712, 3487 |
| AspS9I | GGNCC | 8 cut(s) | 4, 131, 141, 247, 1122, 1787, 2564, 2921 |
| AsuC2I | CCSGG | 3 cut(s) | 1670, 2072, 2472 |
| AsuHPI | GGTGA | 9 cut(s) | 215, 615, 768, 803, 1516, 1585, 2467, 2539, 2582 |
| AsuII | TTCGAA | 1 cut(s) | 590 |
| AsuNHI | GCTAGC | 1 cut(s) | 3139 |
| AvaI | CYCGRG | 2 cut(s) | 570, 2586 |
| AvaII | GGWCC | 3 cut(s) | 141, 1122, 1787 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 1 cut(s) | 3238 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1089, 1122 |
| BanII | GRGCYC | 4 cut(s) | 2003, 2385, 2775, 2882 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1519, 1551 |
| BauI | CACGAG | 1 cut(s) | 1974 |
| BbsI | GAAGAC | 4 cut(s) | 1278, 1586, 2754, 2906 |
| Bbv12I | GWGCWC | 5 cut(s) | 2003, 2385, 2462, 2882, 3238 |
| BbvI | GCAGC | 7 cut(s) | 46, 1225, 1389, 2779, 3047, 3329, 3418 |
| BccI | CCATC | 7 cut(s) | 16, 489, 781, 1666, 1702, 1857, 2494 |
| BceAI | ACGGC | 2 cut(s) | 2675, 3377 |
| BciT130I | CCWGG | 9 cut(s) | 631, 829, 1326, 2185, 2568, 2828, 2925, 3188, 3377 |
| BciVI | GTATCC | 1 cut(s) | 1732 |
| BclI | TGATCA | 1 cut(s) | 595 |
| BcnI | CCSGG | 3 cut(s) | 1670, 2072, 2472 |
| BcoDI | GTCTC | 3 cut(s) | 72, 1752, 2848 |
| BcuI | ACTAGT | 2 cut(s) | 497, 3398 |
| BfaI | CTAG | 9 cut(s) | 155, 393, 498, 1119, 2264, 2442, 2580, 3140, 3399 |
| BfmI | CTRYAG | 2 cut(s) | 213, 2793 |
| BfoI | RGCGCY | 2 cut(s) | 532, 3488 |
| BfrI | CTTAAG | 1 cut(s) | 2375 |
| BfuAI | ACCTGC | 2 cut(s) | 634, 2332 |
| BfuI | GTATCC | 1 cut(s) | 1732 |
| BglII | AGATCT | 1 cut(s) | 1213 |
| BisI | GCNGC | 7 cut(s) | 60, 1239, 1403, 2793, 3036, 3318, 3407 |
| BlsI | GCNGC | 7 cut(s) | 61, 1240, 1404, 2794, 3037, 3319, 3408 |
| BmcAI | AGTACT | 2 cut(s) | 2584, 2799 |
| Bme18I | GGWCC | 3 cut(s) | 141, 1122, 1787 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 508, 2165 |
| BmeT110I | CYCGRG | 2 cut(s) | 570, 2586 |
| BmgT120I | GGNCC | 8 cut(s) | 4, 131, 141, 247, 1122, 1787, 2564, 2921 |
| BmiI | GGNNCC | 2 cut(s) | 6, 1788 |
| BmrI | ACTGGG | 5 cut(s) | 105, 353, 1370, 1793, 3237 |
| BmsI | GCATC | 9 cut(s) | 370, 500, 646, 1183, 1218, 1604, 2984, 3022, 3118 |
| BmtI | GCTAGC | 1 cut(s) | 3143 |
| BmuI | ACTGGG | 5 cut(s) | 105, 353, 1370, 1793, 3237 |
| BpiI | GAAGAC | 4 cut(s) | 1278, 1586, 2754, 2906 |
| Bpu10I | CCTNAGC | 2 cut(s) | 532, 874 |
| Bpu14I | TTCGAA | 1 cut(s) | 590 |
| BpuEI | CTTGAG | 3 cut(s) | 2369, 2872, 3079 |
| BpuMI | CCSGG | 3 cut(s) | 1670, 2072, 2472 |
| BsaAI | YACGTR | 1 cut(s) | 2868 |
| BsaHI | GRCGYC | 1 cut(s) | 743 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1365, 1395, 1732, 1762, 1852, 1882 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 232, 487, 1325, 1562, 2264 |
| Bse118I | RCCGGY | 1 cut(s) | 3114 |
| Bse1I | ACTGG | 7 cut(s) | 100, 348, 949, 1365, 1788, 2467, 3232 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 4 cut(s) | 324, 933, 2169, 3150 |
| BseBI | CCWGG | 9 cut(s) | 631, 829, 1326, 2185, 2568, 2828, 2925, 3188, 3377 |
| BseGI | GGATG | 9 cut(s) | 385, 481, 804, 856, 1658, 2179, 2290, 2305, 3053 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 232, 487, 1325, 1562, 2264 |
| BseMI | GCAATG | 4 cut(s) | 324, 933, 2169, 3150 |
| BseMII | CTCAG | 7 cut(s) | 276, 546, 693, 1743, 2691, 2760, 3135 |
| BseNI | ACTGG | 7 cut(s) | 100, 348, 949, 1365, 1788, 2467, 3232 |
| BseRI | GAGGAG | 3 cut(s) | 558, 1185, 3104 |
| BseSI | GKGCMC | 1 cut(s) | 3238 |
| BseXI | GCAGC | 7 cut(s) | 46, 1225, 1389, 2779, 3047, 3329, 3418 |
| BsgI | GTGCAG | 3 cut(s) | 1242, 2264, 2601 |
| Bsh1236I | CGCG | 1 cut(s) | 2670 |
| BsiHKAI | GWGCWC | 5 cut(s) | 2003, 2385, 2462, 2882, 3238 |
| BsiHKCI | CYCGRG | 2 cut(s) | 570, 2586 |
| BsiSI | CCGG | 4 cut(s) | 1670, 2071, 2472, 3115 |
| BslFI | GGGAC | 5 cut(s) | 463, 560, 955, 2136, 2425 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 232, 487, 1325, 1562, 2264 |
| BsmAI | GTCTC | 3 cut(s) | 72, 1752, 2848 |
| BsmFI | GGGAC | 5 cut(s) | 463, 560, 955, 2136, 2425 |
| BsmI | GAATGC | 1 cut(s) | 1597 |
| BsoBI | CYCGRG | 2 cut(s) | 570, 2586 |
| Bsp119I | TTCGAA | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 6 cut(s) | 2003, 2385, 2462, 2775, 2882, 3238 |
| Bsp1407I | TGTACA | 3 cut(s) | 1648, 3206, 3341 |
| Bsp19I | CCATGG | 1 cut(s) | 2904 |
| BspACI | CCGC | 6 cut(s) | 37, 858, 1662, 1858, 2885, 3359 |
| BspCNI | CTCAG | 7 cut(s) | 277, 545, 694, 1744, 2692, 2761, 3134 |
| BspFNI | CGCG | 1 cut(s) | 2670 |
| BspHI | TCATGA | 1 cut(s) | 679 |
| BspLI | GGNNCC | 2 cut(s) | 6, 1788 |
| BspMAI | CTGCAG | 1 cut(s) | 2797 |
| BspMI | ACCTGC | 2 cut(s) | 634, 2332 |
| BspOI | GCTAGC | 1 cut(s) | 3143 |
| BspPI | GGATC | 6 cut(s) | 1947, 2191, 3157, 3164, 3198, 3236 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspT104I | TTCGAA | 1 cut(s) | 590 |
| BspTI | CTTAAG | 1 cut(s) | 2375 |
| BsrDI | GCAATG | 4 cut(s) | 324, 933, 2169, 3150 |
| BsrFI | RCCGGY | 1 cut(s) | 3114 |
| BsrGI | TGTACA | 3 cut(s) | 1648, 3206, 3341 |
| BsrI | ACTGG | 7 cut(s) | 100, 348, 949, 1365, 1788, 2467, 3232 |
| BssAI | RCCGGY | 1 cut(s) | 3114 |
| BssNI | GRCGYC | 1 cut(s) | 743 |
| BssSI | CACGAG | 1 cut(s) | 1974 |
| BssT1I | CCWWGG | 4 cut(s) | 144, 1904, 2005, 2904 |
| Bst2BI | CACGAG | 1 cut(s) | 1974 |
| Bst2UI | CCWGG | 9 cut(s) | 631, 829, 1326, 2185, 2568, 2828, 2925, 3188, 3377 |
| Bst6I | CTCTTC | 2 cut(s) | 144, 285 |
| BstACI | GRCGYC | 1 cut(s) | 743 |
| BstAFI | CTTAAG | 1 cut(s) | 2375 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1115 |
| BstAUI | TGTACA | 3 cut(s) | 1648, 3206, 3341 |
| BstBAI | YACGTR | 1 cut(s) | 2868 |
| BstBI | TTCGAA | 1 cut(s) | 590 |
| BstC8I | GCNNGC | 9 cut(s) | 411, 2297, 2553, 2649, 3045, 3133, 3137, 3141, 3363 |
| BstDSI | CCRYGG | 3 cut(s) | 2015, 2691, 2904 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2262 |
| BstF5I | GGATG | 9 cut(s) | 385, 481, 804, 856, 1658, 2179, 2290, 2305, 3053 |
| BstFNI | CGCG | 1 cut(s) | 2670 |
| BstH2I | RGCGCY | 2 cut(s) | 532, 3488 |
| BstHHI | GCGC | 4 cut(s) | 531, 2672, 2712, 3487 |
| BstMAI | GTCTC | 3 cut(s) | 72, 1752, 2848 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 879, 1115, 1558, 1670, 2007, 2636, 2928, 3044, 3371 |
| BstNI | CCWGG | 9 cut(s) | 631, 829, 1326, 2185, 2568, 2828, 2925, 3188, 3377 |
| BstSFI | CTRYAG | 2 cut(s) | 213, 2793 |
| BstSLI | GKGCMC | 1 cut(s) | 3238 |
| BstSNI | TACGTA | 1 cut(s) | 2868 |
| BstUI | CGCG | 1 cut(s) | 2670 |
| BstV1I | GCAGC | 7 cut(s) | 46, 1225, 1389, 2779, 3047, 3329, 3418 |
| BstV2I | GAAGAC | 4 cut(s) | 1278, 1586, 2754, 2906 |
| BstX2I | RGATCY | 4 cut(s) | 1213, 2196, 3149, 3169 |
| BstYI | RGATCY | 4 cut(s) | 1213, 2196, 3149, 3169 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuI | GTATCC | 1 cut(s) | 1732 |
| BtgI | CCRYGG | 3 cut(s) | 2015, 2691, 2904 |
| BtsCI | GGATG | 9 cut(s) | 385, 481, 804, 856, 1658, 2179, 2290, 2305, 3053 |
| BtsI | GCAGTG | 1 cut(s) | 512 |
| BtsIMutI | CAGTG | 7 cut(s) | 364, 512, 882, 1402, 1894, 2349, 2460 |
| BveI | ACCTGC | 2 cut(s) | 634, 2332 |
| Cac8I | GCNNGC | 9 cut(s) | 411, 2297, 2553, 2649, 3045, 3133, 3137, 3141, 3363 |
| CciI | TCATGA | 1 cut(s) | 679 |
| CfoI | GCGC | 4 cut(s) | 531, 2672, 2712, 3487 |
| Cfr10I | RCCGGY | 1 cut(s) | 3114 |
| Cfr13I | GGNCC | 8 cut(s) | 4, 131, 141, 247, 1122, 1787, 2564, 2921 |
| CseI | GACGC | 1 cut(s) | 751 |
| CsiI | ACCWGGT | 1 cut(s) | 2826 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2899, 2934, 3145, 3180 |
| DraI | TTTAAA | 3 cut(s) | 642, 1348, 2779 |
| DriI | GACNNNNNGTC | 2 cut(s) | 508, 2165 |
| EaeI | YGGCCR | 1 cut(s) | 1671 |
| Eam1104I | CTCTTC | 2 cut(s) | 144, 285 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 508, 2165 |
| EarI | CTCTTC | 2 cut(s) | 144, 285 |
| EciI | GGCGGA | 1 cut(s) | 3348 |
| Ecl136II | GAGCTC | 3 cut(s) | 2001, 2383, 2880 |
| Eco105I | TACGTA | 1 cut(s) | 2868 |
| Eco130I | CCWWGG | 4 cut(s) | 144, 1904, 2005, 2904 |
| Eco147I | AGGCCT | 3 cut(s) | 269, 544, 707 |
| Eco24I | GRGCYC | 4 cut(s) | 2003, 2385, 2775, 2882 |
| Eco47I | GGWCC | 3 cut(s) | 141, 1122, 1787 |
| Eco53kI | GAGCTC | 3 cut(s) | 2001, 2383, 2880 |
| Eco57I | CTGAAG | 3 cut(s) | 539, 906, 1254 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| Eco88I | CYCGRG | 2 cut(s) | 570, 2586 |
| EcoICRI | GAGCTC | 3 cut(s) | 2001, 2383, 2880 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2262 |
| EcoO109I | RGGNCCY | 4 cut(s) | 131, 247, 1122, 1787 |
| EcoRII | CCWGG | 9 cut(s) | 629, 827, 1324, 2183, 2566, 2826, 2923, 3186, 3375 |
| EcoT14I | CCWWGG | 4 cut(s) | 144, 1904, 2005, 2904 |
| EcoT22I | ATGCAT | 1 cut(s) | 1597 |
| EcoT38I | GRGCYC | 4 cut(s) | 2003, 2385, 2775, 2882 |
| ErhI | CCWWGG | 4 cut(s) | 144, 1904, 2005, 2904 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 965, 997, 1077, 1109, 2043, 2075 |
| FaqI | GGGAC | 5 cut(s) | 463, 560, 955, 2136, 2425 |
| FauI | CCCGC | 1 cut(s) | 2892 |
| FauNDI | CATATG | 1 cut(s) | 2982 |
| FbaI | TGATCA | 1 cut(s) | 595 |
| FblI | GTMKAC | 1 cut(s) | 2223 |
| Fnu4HI | GCNGC | 7 cut(s) | 60, 1239, 1403, 2793, 3036, 3318, 3407 |
| FokI | GGATG | 9 cut(s) | 392, 468, 811, 863, 1645, 2166, 2292, 2297, 3040 |
| FriOI | GRGCYC | 4 cut(s) | 2003, 2385, 2775, 2882 |
| Fsp4HI | GCNGC | 7 cut(s) | 60, 1239, 1403, 2793, 3036, 3318, 3407 |
| FspBI | CTAG | 9 cut(s) | 155, 393, 498, 1119, 2264, 2442, 2580, 3140, 3399 |
| GlaI | GCGC | 4 cut(s) | 530, 2671, 2711, 3486 |
| GluI | GCNGC | 7 cut(s) | 60, 1239, 1403, 2793, 3036, 3318, 3407 |
| HaeII | RGCGCY | 2 cut(s) | 532, 3488 |
| HapII | CCGG | 4 cut(s) | 1670, 2071, 2472, 3115 |
| HgaI | GACGC | 1 cut(s) | 751 |
| HhaI | GCGC | 4 cut(s) | 531, 2672, 2712, 3487 |
| Hin1I | GRCGYC | 1 cut(s) | 743 |
| Hin6I | GCGC | 4 cut(s) | 529, 2670, 2710, 3485 |
| HinP1I | GCGC | 4 cut(s) | 529, 2670, 2710, 3485 |
| HincII | GTYRAC | 4 cut(s) | 2224, 2356, 2664, 3198 |
| HindII | GTYRAC | 4 cut(s) | 2224, 2356, 2664, 3198 |
| HindIII | AAGCTT | 4 cut(s) | 871, 1041, 1826, 2057 |
| HpaI | GTTAAC | 1 cut(s) | 3198 |
| HpaII | CCGG | 4 cut(s) | 1670, 2071, 2472, 3115 |
| HphI | GGTGA | 9 cut(s) | 215, 615, 768, 803, 1516, 1585, 2467, 2539, 2582 |
| Hpy166II | GTNNAC | 9 cut(s) | 341, 362, 1529, 2224, 2356, 2664, 3198, 3236, 3436 |
| Hpy8I | GTNNAC | 9 cut(s) | 341, 362, 1529, 2224, 2356, 2664, 3198, 3236, 3436 |
| Hpy99I | CGWCG | 1 cut(s) | 2225 |
| HpyCH4IV | ACGT | 1 cut(s) | 2867 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 879, 1115, 1558, 1670, 2007, 2636, 2928, 3044, 3371 |
| HpySE526I | ACGT | 1 cut(s) | 2867 |
| Hsp92I | GRCGYC | 1 cut(s) | 743 |
| HspAI | GCGC | 4 cut(s) | 529, 2670, 2710, 3485 |
| Ksp22I | TGATCA | 1 cut(s) | 595 |
| KspAI | GTTAAC | 1 cut(s) | 3198 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 5 cut(s) | 1998, 2006, 2380, 2877, 2885 |
| Lsp1109I | GCAGC | 7 cut(s) | 46, 1225, 1389, 2779, 3047, 3329, 3418 |
| LweI | GCATC | 9 cut(s) | 370, 500, 646, 1183, 1218, 1604, 2984, 3022, 3118 |
| MabI | ACCWGGT | 1 cut(s) | 2826 |
| MaeI | CTAG | 9 cut(s) | 155, 393, 498, 1119, 2264, 2442, 2580, 3140, 3399 |
| MaeII | ACGT | 1 cut(s) | 2867 |
| MfeI | CAATTG | 1 cut(s) | 1893 |
| MflI | RGATCY | 4 cut(s) | 1213, 2196, 3149, 3169 |
| MhlI | GDGCHC | 6 cut(s) | 2003, 2385, 2462, 2775, 2882, 3238 |
| MlyI | GAGTC | 9 cut(s) | 443, 485, 559, 582, 1259, 1321, 2598, 2659, 2821 |
| MmeI | TCCRAC | 4 cut(s) | 1927, 2137, 2153, 3291 |
| Mph1103I | ATGCAT | 1 cut(s) | 1597 |
| MroXI | GAANNNNTTC | 1 cut(s) | 616 |
| MslI | CAYNNNNRTG | 4 cut(s) | 336, 717, 840, 2985 |
| MspA1I | CMGCKG | 1 cut(s) | 3365 |
| MspCI | CTTAAG | 1 cut(s) | 2375 |
| MspI | CCGG | 4 cut(s) | 1670, 2071, 2472, 3115 |
| MunI | CAATTG | 1 cut(s) | 1893 |
| Mva1269I | GAATGC | 1 cut(s) | 1597 |
| MvaI | CCWGG | 9 cut(s) | 631, 829, 1326, 2185, 2568, 2828, 2925, 3188, 3377 |
| MvnI | CGCG | 1 cut(s) | 2670 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 879, 1115, 1558, 1670, 2007, 2636, 2928, 3044, 3371 |
| NciI | CCSGG | 3 cut(s) | 1670, 2072, 2472 |
| NcoI | CCATGG | 1 cut(s) | 2904 |
| NdeI | CATATG | 1 cut(s) | 2982 |
| NheI | GCTAGC | 1 cut(s) | 3139 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 1788 |
| NmeAIII | GCCGAG | 1 cut(s) | 2122 |
| NmuCI | GTSAC | 8 cut(s) | 221, 353, 500, 510, 817, 1472, 2347, 2444 |
| NsiI | ATGCAT | 1 cut(s) | 1597 |
| NspV | TTCGAA | 1 cut(s) | 590 |
| OliI | CACNNNNGTG | 1 cut(s) | 336 |
| PaeI | GCATGC | 3 cut(s) | 413, 2299, 3139 |
| PaeR7I | CTCGAG | 2 cut(s) | 570, 2586 |
| PagI | TCATGA | 1 cut(s) | 679 |
| PaqCI | CACCTGC | 1 cut(s) | 634 |
| PasI | CCCWGGG | 1 cut(s) | 2184 |
| PceI | AGGCCT | 3 cut(s) | 269, 544, 707 |
| PciI | ACATGT | 4 cut(s) | 123, 1021, 1261, 3338 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PctI | GAATGC | 1 cut(s) | 1597 |
| PdmI | GAANNNNTTC | 1 cut(s) | 616 |
| PfeI | GAWTC | 6 cut(s) | 809, 2075, 2765, 2969, 3331, 3472 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 487, 1325 |
| PkrI | GCNGC | 7 cut(s) | 61, 1240, 1404, 2794, 3037, 3319, 3408 |
| PleI | GAGTC | 9 cut(s) | 442, 484, 559, 581, 1258, 1320, 2597, 2659, 2820 |
| PpsI | GAGTC | 9 cut(s) | 442, 484, 559, 581, 1258, 1320, 2597, 2659, 2820 |
| Ppu21I | YACGTR | 1 cut(s) | 2868 |
| PpuMI | RGGWCCY | 2 cut(s) | 1122, 1787 |
| PscI | ACATGT | 4 cut(s) | 123, 1021, 1261, 3338 |
| PshBI | ATTAAT | 1 cut(s) | 2391 |
| Psp124BI | GAGCTC | 3 cut(s) | 2003, 2385, 2882 |
| Psp5II | RGGWCCY | 2 cut(s) | 1122, 1787 |
| Psp6I | CCWGG | 9 cut(s) | 629, 827, 1324, 2183, 2566, 2826, 2923, 3186, 3375 |
| PspGI | CCWGG | 9 cut(s) | 629, 827, 1324, 2183, 2566, 2826, 2923, 3186, 3375 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 1788 |
| PspPI | GGNCC | 8 cut(s) | 4, 131, 141, 247, 1122, 1787, 2564, 2921 |
| PspPPI | RGGWCCY | 2 cut(s) | 1122, 1787 |
| PspXI | VCTCGAGB | 2 cut(s) | 570, 2586 |
| PstI | CTGCAG | 1 cut(s) | 2797 |
| PsuI | RGATCY | 4 cut(s) | 1213, 2196, 3149, 3169 |
| PvuII | CAGCTG | 1 cut(s) | 3365 |
| RseI | CAYNNNNRTG | 4 cut(s) | 336, 717, 840, 2985 |
| SacI | GAGCTC | 3 cut(s) | 2003, 2385, 2882 |
| SalI | GTCGAC | 1 cut(s) | 2222 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SatI | GCNGC | 7 cut(s) | 60, 1239, 1403, 2793, 3036, 3318, 3407 |
| Sau96I | GGNCC | 8 cut(s) | 4, 131, 141, 247, 1122, 1787, 2564, 2921 |
| ScaI | AGTACT | 2 cut(s) | 2584, 2799 |
| SchI | GAGTC | 9 cut(s) | 443, 485, 559, 582, 1259, 1321, 2598, 2659, 2821 |
| SduI | GDGCHC | 6 cut(s) | 2003, 2385, 2462, 2775, 2882, 3238 |
| SexAI | ACCWGGT | 1 cut(s) | 2826 |
| SfaNI | GCATC | 9 cut(s) | 370, 500, 646, 1183, 1218, 1604, 2984, 3022, 3118 |
| SfcI | CTRYAG | 2 cut(s) | 213, 2793 |
| Sfr274I | CTCGAG | 2 cut(s) | 570, 2586 |
| SfuI | TTCGAA | 1 cut(s) | 590 |
| SinI | GGWCC | 3 cut(s) | 141, 1122, 1787 |
| SlaI | CTCGAG | 2 cut(s) | 570, 2586 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 336, 717, 840, 2985 |
| SmlI | CTYRAG | 6 cut(s) | 570, 2375, 2384, 2586, 2851, 3058 |
| SmoI | CTYRAG | 6 cut(s) | 570, 2375, 2384, 2586, 2851, 3058 |
| SnaBI | TACGTA | 1 cut(s) | 2868 |
| SpeI | ACTAGT | 2 cut(s) | 497, 3398 |
| SphI | GCATGC | 3 cut(s) | 413, 2299, 3139 |
| SseBI | AGGCCT | 3 cut(s) | 269, 544, 707 |
| SsiI | CCGC | 6 cut(s) | 37, 858, 1662, 1858, 2885, 3359 |
| SspI | AATATT | 2 cut(s) | 1285, 1816 |
| SspMI | CTAG | 9 cut(s) | 155, 393, 498, 1119, 2264, 2442, 2580, 3140, 3399 |
| SstI | GAGCTC | 3 cut(s) | 2003, 2385, 2882 |
| StuI | AGGCCT | 3 cut(s) | 269, 544, 707 |
| StyI | CCWWGG | 4 cut(s) | 144, 1904, 2005, 2904 |
| TaiI | ACGT | 1 cut(s) | 2870 |
| TaqI | TCGA | 4 cut(s) | 571, 590, 2223, 2587 |
| TatI | WGTACW | 7 cut(s) | 340, 1648, 2212, 2582, 2797, 3206, 3341 |
| TfiI | GAWTC | 6 cut(s) | 809, 2075, 2765, 2969, 3331, 3472 |
| TscAI | CASTG | 7 cut(s) | 364, 519, 889, 1402, 1894, 2356, 2467 |
| TseFI | GTSAC | 8 cut(s) | 221, 353, 500, 510, 817, 1472, 2347, 2444 |
| TseI | GCWGC | 7 cut(s) | 59, 1238, 1402, 2792, 3035, 3317, 3406 |
| Tsp45I | GTSAC | 8 cut(s) | 221, 353, 500, 510, 817, 1472, 2347, 2444 |
| TspGWI | ACGGA | 3 cut(s) | 2032, 3168, 3453 |
| TspRI | CASTG | 7 cut(s) | 364, 519, 889, 1402, 1894, 2356, 2467 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 487, 1325 |
| Vha464I | CTTAAG | 1 cut(s) | 2375 |
| VneI | GTGCAC | 1 cut(s) | 3234 |
| VpaK11BI | GGWCC | 3 cut(s) | 141, 1122, 1787 |
| VspI | ATTAAT | 1 cut(s) | 2391 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2262 |
| XapI | RAATTY | 2 cut(s) | 160, 2317 |
| XhoI | CTCGAG | 2 cut(s) | 570, 2586 |
| XmiI | GTMKAC | 1 cut(s) | 2223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 616 |
| XspI | CTAG | 9 cut(s) | 155, 393, 498, 1119, 2264, 2442, 2580, 3140, 3399 |
| ZrmI | AGTACT | 2 cut(s) | 2584, 2799 |
| Zsp2I | ATGCAT | 1 cut(s) | 1597 |