Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1907 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 742 |
| Acc36I | ACCTGC | 2 cut(s) | 2245, 2788 |
| AccB1I | GGYRCC | 1 cut(s) | 1040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3221 |
| AccI | GTMKAC | 2 cut(s) | 1322, 1430 |
| AccII | CGCG | 1 cut(s) | 1771 |
| AciI | CCGC | 3 cut(s) | 1316, 1771, 2213 |
| AclWI | GGATC | 3 cut(s) | 2104, 2968, 3023 |
| AcoI | YGGCCR | 1 cut(s) | 2746 |
| AcsI | RAATTY | 4 cut(s) | 1298, 1332, 1522, 2892 |
| AcuI | CTGAAG | 6 cut(s) | 168, 1185, 1233, 1689, 2352, 3015 |
| AcyI | GRCGYC | 1 cut(s) | 737 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 12, 232, 833, 834, 835, 2028, 2103, 2871, 3221 |
| AflIII | ACRYGT | 3 cut(s) | 123, 2077, 3122 |
| AhlI | ACTAGT | 1 cut(s) | 3182 |
| AjnI | CCWGG | 5 cut(s) | 623, 731, 1599, 2096, 3158 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2974, 3006 |
| Alw21I | GWGCWC | 2 cut(s) | 2470, 2491 |
| Alw26I | GTCTC | 6 cut(s) | 186, 477, 1614, 1665, 1918, 2665 |
| Alw44I | GTGCAC | 1 cut(s) | 2487 |
| AlwI | GGATC | 3 cut(s) | 2104, 2968, 3023 |
| Ama87I | CYCGRG | 1 cut(s) | 284 |
| ApaLI | GTGCAC | 1 cut(s) | 2487 |
| ApeKI | GCWGC | 5 cut(s) | 501, 873, 2609, 2975, 3101 |
| ApoI | RAATTY | 4 cut(s) | 1298, 1332, 1522, 2892 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1103, 1135, 2708, 2740 |
| AseI | ATTAAT | 1 cut(s) | 2304 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1741, 2835 |
| AspLEI | GCGC | 4 cut(s) | 528, 1129, 1771, 2529 |
| AspS9I | GGNCC | 6 cut(s) | 4, 131, 141, 247, 267, 825 |
| AsuC2I | CCSGG | 3 cut(s) | 8, 575, 1985 |
| AsuHPI | GGTGA | 6 cut(s) | 215, 609, 1347, 1453, 1519, 3135 |
| AvaI | CYCGRG | 1 cut(s) | 284 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| BaeGI | GKGCMC | 2 cut(s) | 293, 2491 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3221, 3254 |
| BalI | TGGCCA | 1 cut(s) | 2748 |
| BanI | GGYRCC | 1 cut(s) | 1040 |
| BanII | GRGCYC | 1 cut(s) | 2470 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2445, 2477 |
| BauI | CACGAG | 3 cut(s) | 567, 1887, 3272 |
| BbsI | GAAGAC | 6 cut(s) | 1116, 1272, 1461, 1744, 2333, 3069 |
| Bbv12I | GWGCWC | 2 cut(s) | 2470, 2491 |
| BbvI | GCAGC | 5 cut(s) | 488, 885, 2596, 2987, 3113 |
| BccI | CCATC | 7 cut(s) | 491, 644, 775, 839, 1770, 2027, 2555 |
| BceAI | ACGGC | 2 cut(s) | 2492, 3161 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 275, 309, 1645, 1679, 3229, 3263 |
| BciT130I | CCWGG | 5 cut(s) | 625, 733, 1601, 2098, 3160 |
| BclI | TGATCA | 1 cut(s) | 2641 |
| BcnI | CCSGG | 3 cut(s) | 8, 575, 1985 |
| BcoDI | GTCTC | 6 cut(s) | 186, 477, 1614, 1665, 1918, 2665 |
| BcuI | ACTAGT | 1 cut(s) | 3182 |
| BfaI | CTAG | 6 cut(s) | 66, 1029, 2103, 2177, 3183, 3266 |
| BfmI | CTRYAG | 6 cut(s) | 1431, 1536, 1578, 1664, 2610, 2973 |
| BfuAI | ACCTGC | 2 cut(s) | 2245, 2788 |
| BglII | AGATCT | 1 cut(s) | 1144 |
| BisI | GCNGC | 6 cut(s) | 502, 874, 2213, 2610, 2976, 3102 |
| BlsI | GCNGC | 6 cut(s) | 503, 875, 2214, 2611, 2977, 3103 |
| BmcAI | AGTACT | 5 cut(s) | 611, 763, 1006, 1847, 2616 |
| Bme1390I | CCNGG | 8 cut(s) | 8, 575, 625, 733, 1601, 1985, 2098, 3160 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmeT110I | CYCGRG | 1 cut(s) | 284 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 131, 141, 247, 267, 825 |
| BmiI | GGNNCC | 6 cut(s) | 6, 388, 699, 827, 1042, 1701 |
| BmrFI | CCNGG | 8 cut(s) | 8, 575, 625, 733, 1601, 1985, 2098, 3160 |
| BmrI | ACTGGG | 1 cut(s) | 1031 |
| BmsI | GCATC | 6 cut(s) | 1114, 1149, 1642, 2430, 2494, 2929 |
| BmuI | ACTGGG | 1 cut(s) | 1031 |
| BpiI | GAAGAC | 6 cut(s) | 1116, 1272, 1461, 1744, 2333, 3069 |
| BpmI | CTGGAG | 2 cut(s) | 376, 2725 |
| Bpu10I | CCTNAGC | 3 cut(s) | 672, 868, 2448 |
| BpuEI | CTTGAG | 4 cut(s) | 1174, 1636, 1715, 2689 |
| BpuMI | CCSGG | 3 cut(s) | 8, 575, 1985 |
| Bsa29I | ATCGAT | 1 cut(s) | 1809 |
| BsaHI | GRCGYC | 1 cut(s) | 737 |
| BsaI | GGTCTC | 1 cut(s) | 1918 |
| BsaJI | CCNNGG | 9 cut(s) | 6, 285, 829, 1403, 1817, 1918, 1928, 2096, 3159 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 668, 698, 1765, 1795 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 12, 232, 833, 834, 835, 2028, 2103, 2871, 3221 |
| Bse118I | RCCGGY | 2 cut(s) | 2021, 2357 |
| Bse3DI | GCAATG | 3 cut(s) | 324, 1215, 1269 |
| BseBI | CCWGG | 5 cut(s) | 625, 733, 1601, 2098, 3160 |
| BseCI | ATCGAT | 1 cut(s) | 1809 |
| BseDI | CCNNGG | 9 cut(s) | 6, 285, 829, 1403, 1817, 1918, 1928, 2096, 3159 |
| BseGI | GGATG | 8 cut(s) | 798, 850, 1164, 2038, 2092, 2509, 2861, 2941 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 12, 232, 833, 834, 835, 2028, 2103, 2871, 3221 |
| BseMI | GCAATG | 3 cut(s) | 324, 1215, 1269 |
| BseRI | GAGGAG | 2 cut(s) | 555, 2397 |
| BseSI | GKGCMC | 2 cut(s) | 293, 2491 |
| BseXI | GCAGC | 5 cut(s) | 488, 885, 2596, 2987, 3113 |
| BsgI | GTGCAG | 1 cut(s) | 1176 |
| Bsh1236I | CGCG | 1 cut(s) | 1771 |
| BshNI | GGYRCC | 1 cut(s) | 1040 |
| BshVI | ATCGAT | 1 cut(s) | 1809 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2470, 2491 |
| BsiHKCI | CYCGRG | 1 cut(s) | 284 |
| BsiSI | CCGG | 6 cut(s) | 8, 575, 1984, 2022, 2358, 2727 |
| BslFI | GGGAC | 3 cut(s) | 463, 557, 1039 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 12, 232, 833, 834, 835, 2028, 2103, 2871, 3221 |
| BsmAI | GTCTC | 6 cut(s) | 186, 477, 1614, 1665, 1918, 2665 |
| BsmFI | GGGAC | 3 cut(s) | 463, 557, 1039 |
| Bso31I | GGTCTC | 1 cut(s) | 1918 |
| BsoBI | CYCGRG | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 3 cut(s) | 293, 2470, 2491 |
| Bsp1407I | TGTACA | 3 cut(s) | 775, 3014, 3125 |
| Bsp19I | CCATGG | 1 cut(s) | 1817 |
| BspACI | CCGC | 3 cut(s) | 1316, 1771, 2213 |
| BspDI | ATCGAT | 1 cut(s) | 1809 |
| BspFNI | CGCG | 1 cut(s) | 1771 |
| BspHI | TCATGA | 1 cut(s) | 3111 |
| BspLI | GGNNCC | 6 cut(s) | 6, 388, 699, 827, 1042, 1701 |
| BspMAI | CTGCAG | 3 cut(s) | 1668, 2614, 2977 |
| BspMI | ACCTGC | 2 cut(s) | 2245, 2788 |
| BspPI | GGATC | 3 cut(s) | 2104, 2968, 3023 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 1 cut(s) | 1040 |
| BspTNI | GGTCTC | 1 cut(s) | 1918 |
| BsrDI | GCAATG | 3 cut(s) | 324, 1215, 1269 |
| BsrFI | RCCGGY | 2 cut(s) | 2021, 2357 |
| BsrGI | TGTACA | 3 cut(s) | 775, 3014, 3125 |
| BssAI | RCCGGY | 2 cut(s) | 2021, 2357 |
| BssECI | CCNNGG | 9 cut(s) | 6, 285, 829, 1403, 1817, 1918, 1928, 2096, 3159 |
| BssNI | GRCGYC | 1 cut(s) | 737 |
| BssSI | CACGAG | 3 cut(s) | 567, 1887, 3272 |
| BssT1I | CCWWGG | 3 cut(s) | 1403, 1817, 1918 |
| Bst2BI | CACGAG | 3 cut(s) | 567, 1887, 3272 |
| Bst2UI | CCWGG | 5 cut(s) | 625, 733, 1601, 2098, 3160 |
| Bst4CI | ACNGT | 8 cut(s) | 359, 513, 1009, 1467, 1579, 2625, 3044, 3138 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 285, 1120, 2864 |
| BstACI | GRCGYC | 1 cut(s) | 737 |
| BstAUI | TGTACA | 3 cut(s) | 775, 3014, 3125 |
| BstC8I | GCNNGC | 9 cut(s) | 411, 824, 878, 882, 2210, 2445, 2853, 2944, 2948 |
| BstDSI | CCRYGG | 3 cut(s) | 829, 1817, 1928 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2869 |
| BstF5I | GGATG | 8 cut(s) | 798, 850, 1164, 2038, 2092, 2509, 2861, 2941 |
| BstFNI | CGCG | 1 cut(s) | 1771 |
| BstHHI | GCGC | 4 cut(s) | 528, 1129, 1771, 2529 |
| BstMAI | GTCTC | 6 cut(s) | 186, 477, 1614, 1665, 1918, 2665 |
| BstNI | CCWGG | 5 cut(s) | 625, 733, 1601, 2098, 3160 |
| BstNSI | RCATGY | 4 cut(s) | 127, 2081, 2212, 3126 |
| BstSCI | CCNGG | 8 cut(s) | 6, 573, 623, 731, 1599, 1983, 2096, 3158 |
| BstSFI | CTRYAG | 6 cut(s) | 1431, 1536, 1578, 1664, 2610, 2973 |
| BstSLI | GKGCMC | 2 cut(s) | 293, 2491 |
| BstUI | CGCG | 1 cut(s) | 1771 |
| BstV1I | GCAGC | 5 cut(s) | 488, 885, 2596, 2987, 3113 |
| BstV2I | GAAGAC | 6 cut(s) | 1116, 1272, 1461, 1744, 2333, 3069 |
| BstX2I | RGATCY | 3 cut(s) | 1144, 2109, 2960 |
| BstYI | RGATCY | 3 cut(s) | 1144, 2109, 2960 |
| Bsu15I | ATCGAT | 1 cut(s) | 1809 |
| BsuTUI | ATCGAT | 1 cut(s) | 1809 |
| BtgI | CCRYGG | 3 cut(s) | 829, 1817, 1928 |
| BtgZI | GCGATG | 1 cut(s) | 753 |
| BtsCI | GGATG | 8 cut(s) | 798, 850, 1164, 2038, 2092, 2509, 2861, 2941 |
| BtsI | GCAGTG | 2 cut(s) | 291, 2373 |
| BtsIMutI | CAGTG | 7 cut(s) | 144, 291, 364, 509, 528, 2373, 2749 |
| BveI | ACCTGC | 2 cut(s) | 2245, 2788 |
| Cac8I | GCNNGC | 9 cut(s) | 411, 824, 878, 882, 2210, 2445, 2853, 2944, 2948 |
| CciI | TCATGA | 1 cut(s) | 3111 |
| CfoI | GCGC | 4 cut(s) | 528, 1129, 1771, 2529 |
| Cfr10I | RCCGGY | 2 cut(s) | 2021, 2357 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 131, 141, 247, 267, 825 |
| ClaI | ATCGAT | 1 cut(s) | 1809 |
| CseI | GACGC | 1 cut(s) | 745 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3078, 3113 |
| DraI | TTTAAA | 2 cut(s) | 912, 2596 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 742 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 742 |
| EaeI | YGGCCR | 1 cut(s) | 2746 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 285, 1120, 2864 |
| EarI | CTCTTC | 4 cut(s) | 144, 285, 1120, 2864 |
| Ecl136II | GAGCTC | 1 cut(s) | 2468 |
| Eco130I | CCWWGG | 3 cut(s) | 1403, 1817, 1918 |
| Eco147I | AGGCCT | 1 cut(s) | 541 |
| Eco24I | GRGCYC | 1 cut(s) | 2470 |
| Eco31I | GGTCTC | 1 cut(s) | 1918 |
| Eco32I | GATATC | 2 cut(s) | 176, 2191 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 2468 |
| Eco57I | CTGAAG | 6 cut(s) | 168, 1185, 1233, 1689, 2352, 3015 |
| Eco88I | CYCGRG | 1 cut(s) | 284 |
| EcoICRI | GAGCTC | 1 cut(s) | 2468 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2869 |
| EcoO109I | RGGNCCY | 4 cut(s) | 131, 247, 267, 825 |
| EcoRI | GAATTC | 3 cut(s) | 1332, 1522, 2892 |
| EcoRII | CCWGG | 5 cut(s) | 623, 731, 1599, 2096, 3158 |
| EcoRV | GATATC | 2 cut(s) | 176, 2191 |
| EcoT14I | CCWWGG | 3 cut(s) | 1403, 1817, 1918 |
| EcoT38I | GRGCYC | 1 cut(s) | 2470 |
| ErhI | CCWWGG | 3 cut(s) | 1403, 1817, 1918 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1956, 1988 |
| FaqI | GGGAC | 3 cut(s) | 463, 557, 1039 |
| FauNDI | CATATG | 1 cut(s) | 1678 |
| FbaI | TGATCA | 1 cut(s) | 2641 |
| FblI | GTMKAC | 2 cut(s) | 1322, 1430 |
| Fnu4HI | GCNGC | 6 cut(s) | 502, 874, 2213, 2610, 2976, 3102 |
| FokI | GGATG | 8 cut(s) | 805, 857, 1171, 2045, 2079, 2516, 2848, 2948 |
| FriOI | GRGCYC | 1 cut(s) | 2470 |
| Fsp4HI | GCNGC | 6 cut(s) | 502, 874, 2213, 2610, 2976, 3102 |
| FspBI | CTAG | 6 cut(s) | 66, 1029, 2103, 2177, 3183, 3266 |
| GlaI | GCGC | 4 cut(s) | 527, 1128, 1770, 2528 |
| GluI | GCNGC | 6 cut(s) | 502, 874, 2213, 2610, 2976, 3102 |
| GsuI | CTGGAG | 2 cut(s) | 376, 2725 |
| HapII | CCGG | 6 cut(s) | 8, 575, 1984, 2022, 2358, 2727 |
| HgaI | GACGC | 1 cut(s) | 745 |
| HhaI | GCGC | 4 cut(s) | 528, 1129, 1771, 2529 |
| Hin1I | GRCGYC | 1 cut(s) | 737 |
| Hin6I | GCGC | 4 cut(s) | 526, 1127, 1769, 2527 |
| HinP1I | GCGC | 4 cut(s) | 526, 1127, 1769, 2527 |
| HincII | GTYRAC | 6 cut(s) | 664, 2137, 2269, 2481, 2921, 3006 |
| HindII | GTYRAC | 6 cut(s) | 664, 2137, 2269, 2481, 2921, 3006 |
| HindIII | AAGCTT | 2 cut(s) | 407, 865 |
| HpaI | GTTAAC | 1 cut(s) | 664 |
| HpaII | CCGG | 6 cut(s) | 8, 575, 1984, 2022, 2358, 2727 |
| HphI | GGTGA | 6 cut(s) | 215, 609, 1347, 1453, 1519, 3135 |
| HpyCH4III | ACNGT | 8 cut(s) | 359, 513, 1009, 1467, 1579, 2625, 3044, 3138 |
| HpyCH4IV | ACGT | 1 cut(s) | 1857 |
| HpySE526I | ACGT | 1 cut(s) | 1857 |
| Hsp92I | GRCGYC | 1 cut(s) | 737 |
| HspAI | GCGC | 4 cut(s) | 526, 1127, 1769, 2527 |
| Ksp22I | TGATCA | 1 cut(s) | 2641 |
| KspAI | GTTAAC | 1 cut(s) | 664 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 2 cut(s) | 2694, 2983 |
| Lsp1109I | GCAGC | 5 cut(s) | 488, 885, 2596, 2987, 3113 |
| LweI | GCATC | 6 cut(s) | 1114, 1149, 1642, 2430, 2494, 2929 |
| MaeI | CTAG | 6 cut(s) | 66, 1029, 2103, 2177, 3183, 3266 |
| MaeII | ACGT | 1 cut(s) | 1857 |
| MaeIII | GTNAC | 8 cut(s) | 221, 326, 353, 507, 1252, 1353, 2735, 3178 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MflI | RGATCY | 3 cut(s) | 1144, 2109, 2960 |
| MhlI | GDGCHC | 3 cut(s) | 293, 2470, 2491 |
| MlsI | TGGCCA | 1 cut(s) | 2748 |
| MluNI | TGGCCA | 1 cut(s) | 2748 |
| MlyI | GAGTC | 6 cut(s) | 556, 1106, 1436, 1997, 2564, 2732 |
| MmeI | TCCRAC | 4 cut(s) | 1840, 2050, 2066, 3075 |
| Mox20I | TGGCCA | 1 cut(s) | 2748 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1741, 2835 |
| MscI | TGGCCA | 1 cut(s) | 2748 |
| MslI | CAYNNNNRTG | 2 cut(s) | 165, 2793 |
| Msp20I | TGGCCA | 1 cut(s) | 2748 |
| MspA1I | CMGCKG | 1 cut(s) | 3149 |
| MspI | CCGG | 6 cut(s) | 8, 575, 1984, 2022, 2358, 2727 |
| MspR9I | CCNGG | 8 cut(s) | 8, 575, 625, 733, 1601, 1985, 2098, 3160 |
| MunI | CAATTG | 1 cut(s) | 486 |
| MvaI | CCWGG | 5 cut(s) | 625, 733, 1601, 2098, 3160 |
| MvnI | CGCG | 1 cut(s) | 1771 |
| NciI | CCSGG | 3 cut(s) | 8, 575, 1985 |
| NcoI | CCATGG | 1 cut(s) | 1817 |
| NdeI | CATATG | 1 cut(s) | 1678 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 388, 699, 827, 1042, 1701 |
| NmeAIII | GCCGAG | 2 cut(s) | 2035, 2582 |
| NmuCI | GTSAC | 7 cut(s) | 221, 326, 353, 507, 1353, 2735, 3178 |
| NspI | RCATGY | 4 cut(s) | 127, 2081, 2212, 3126 |
| PaeI | GCATGC | 1 cut(s) | 2212 |
| PagI | TCATGA | 1 cut(s) | 3111 |
| PceI | AGGCCT | 1 cut(s) | 541 |
| PciI | ACATGT | 3 cut(s) | 123, 2077, 3122 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1741, 2835 |
| PfeI | GAWTC | 8 cut(s) | 534, 1184, 1243, 1726, 1852, 2582, 3115, 3246 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3221 |
| PfoI | TCCNGGA | 1 cut(s) | 731 |
| PkrI | GCNGC | 6 cut(s) | 503, 875, 2214, 2611, 2977, 3103 |
| PleI | GAGTC | 6 cut(s) | 556, 1106, 1435, 1996, 2564, 2732 |
| PpsI | GAGTC | 6 cut(s) | 556, 1106, 1435, 1996, 2564, 2732 |
| PscI | ACATGT | 3 cut(s) | 123, 2077, 3122 |
| PshBI | ATTAAT | 1 cut(s) | 2304 |
| PsiI | TTATAA | 1 cut(s) | 1907 |
| Psp124BI | GAGCTC | 1 cut(s) | 2470 |
| Psp6I | CCWGG | 5 cut(s) | 623, 731, 1599, 2096, 3158 |
| PspGI | CCWGG | 5 cut(s) | 623, 731, 1599, 2096, 3158 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 388, 699, 827, 1042, 1701 |
| PspPI | GGNCC | 6 cut(s) | 4, 131, 141, 247, 267, 825 |
| PstI | CTGCAG | 3 cut(s) | 1668, 2614, 2977 |
| PsuI | RGATCY | 3 cut(s) | 1144, 2109, 2960 |
| PvuII | CAGCTG | 1 cut(s) | 3149 |
| RseI | CAYNNNNRTG | 2 cut(s) | 165, 2793 |
| SacI | GAGCTC | 1 cut(s) | 2470 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SatI | GCNGC | 6 cut(s) | 502, 874, 2213, 2610, 2976, 3102 |
| Sau96I | GGNCC | 6 cut(s) | 4, 131, 141, 247, 267, 825 |
| ScaI | AGTACT | 5 cut(s) | 611, 763, 1006, 1847, 2616 |
| SchI | GAGTC | 6 cut(s) | 556, 1106, 1436, 1997, 2564, 2732 |
| ScrFI | CCNGG | 8 cut(s) | 8, 575, 625, 733, 1601, 1985, 2098, 3160 |
| SduI | GDGCHC | 3 cut(s) | 293, 2470, 2491 |
| SfaNI | GCATC | 6 cut(s) | 1114, 1149, 1642, 2430, 2494, 2929 |
| SfcI | CTRYAG | 6 cut(s) | 1431, 1536, 1578, 1664, 2610, 2973 |
| SinI | GGWCC | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 165, 2793 |
| SmlI | CTYRAG | 4 cut(s) | 1153, 1615, 1730, 2668 |
| SmoI | CTYRAG | 4 cut(s) | 1153, 1615, 1730, 2668 |
| SpeI | ACTAGT | 1 cut(s) | 3182 |
| SphI | GCATGC | 1 cut(s) | 2212 |
| SseBI | AGGCCT | 1 cut(s) | 541 |
| SsiI | CCGC | 3 cut(s) | 1316, 1771, 2213 |
| SspMI | CTAG | 6 cut(s) | 66, 1029, 2103, 2177, 3183, 3266 |
| SstI | GAGCTC | 1 cut(s) | 2470 |
| StuI | AGGCCT | 1 cut(s) | 541 |
| StyD4I | CCNGG | 8 cut(s) | 6, 573, 623, 731, 1599, 1983, 2096, 3158 |
| StyI | CCWWGG | 3 cut(s) | 1403, 1817, 1918 |
| TaaI | ACNGT | 8 cut(s) | 359, 513, 1009, 1467, 1579, 2625, 3044, 3138 |
| TaiI | ACGT | 1 cut(s) | 1860 |
| TaqI | TCGA | 2 cut(s) | 403, 1809 |
| TauI | GCSGC | 1 cut(s) | 2215 |
| TfiI | GAWTC | 8 cut(s) | 534, 1184, 1243, 1726, 1852, 2582, 3115, 3246 |
| TscAI | CASTG | 7 cut(s) | 151, 298, 364, 516, 535, 2380, 2749 |
| TseFI | GTSAC | 7 cut(s) | 221, 326, 353, 507, 1353, 2735, 3178 |
| TseI | GCWGC | 5 cut(s) | 501, 873, 2609, 2975, 3101 |
| Tsp45I | GTSAC | 7 cut(s) | 221, 326, 353, 507, 1353, 2735, 3178 |
| TspGWI | ACGGA | 6 cut(s) | 209, 442, 710, 1648, 1945, 2133 |
| TspRI | CASTG | 7 cut(s) | 151, 298, 364, 516, 535, 2380, 2749 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3221 |
| VneI | GTGCAC | 1 cut(s) | 2487 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| VspI | ATTAAT | 1 cut(s) | 2304 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2869 |
| XapI | RAATTY | 4 cut(s) | 1298, 1332, 1522, 2892 |
| XceI | RCATGY | 4 cut(s) | 127, 2081, 2212, 3126 |
| XmiI | GTMKAC | 2 cut(s) | 1322, 1430 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1741, 2835 |
| XspI | CTAG | 6 cut(s) | 66, 1029, 2103, 2177, 3183, 3266 |
| ZrmI | AGTACT | 5 cut(s) | 611, 763, 1006, 1847, 2616 |