FvH4_4g18960

Major allergen Pru ar 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006928
Physical Location & Seq
Reverse (-)
22716451 .. 22717806
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18960.t1

Sequence Viewer

Length: 492 bp
ATGGGGATCACCAAAATCAGTCAGAAGTTTATCACTCAGGTAACTCCAGAAAGGATGTTCAAGGCCTTGATCCTTGATGCTCACAACCTCTGTCCCAAGCTCATGTTCTCTTCGATTAAAAGTATCGAATTCCTGGAAGGTGAAGGAGAAGTTGGAACCATCAAACAGATCAACTTCACTGAAGCTAGTCCTATGAGATATGCAAAGCACAGGATTGATGCTCTGGACAAGGAGAATCTGATGTGCAGGTACACCTTCATTGAAAGTGATGCAGCAGAACATTTGCTGGACAAGCTTGAGTACATTACCTATGATGTCAAGTTTGAAGGGTATGGCAGGGGAGGATGTATATGTCATTTGACAAGTGAATACAAAGCCAAAGATGGTATTCAGATCAAAGAAGAGGACATTGAGCTTGGCAAAGACAGAGCCATTGGGATGTATGAAGTCCTAGAGGCCTACCTAATGGCTCATCCTCGTGCATACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

164

Amino Acids

18.69

Weight (kDa)

5.58

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 141 2.5e-19 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 14, 64
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 251, 302
AgsI TTSAA 3 cut(s) 61, 263, 326
AjnI CCWGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 4 cut(s) 89, 121, 135, 167
AluBI AGCT 4 cut(s) 100, 185, 295, 415
AluI AGCT 4 cut(s) 100, 185, 295, 415
AlwI GGATC 2 cut(s) 14, 64
AoxI GGCC 2 cut(s) 63, 456
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 152
BauI CACGAG 1 cut(s) 477
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 167, 377
BciT130I CCWGG 1 cut(s) 134
BfaI CTAG 2 cut(s) 186, 452
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 3 cut(s) 67, 208, 259
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 4 cut(s) 60, 350, 444, 472
BseMII CTCAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 65, 458
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 65, 458
Bsp143I GATC 4 cut(s) 6, 69, 168, 393
BspANI GGCC 2 cut(s) 65, 458
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 2 cut(s) 14, 64
BssMI GATC 4 cut(s) 6, 69, 168, 393
BssSI CACGAG 1 cut(s) 477
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 115, 396
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 60, 350, 444, 472
BstKTI GATC 4 cut(s) 9, 72, 171, 396
BstMBI GATC 4 cut(s) 6, 69, 168, 393
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 284
BsuRI GGCC 2 cut(s) 65, 458
BtsCI GGATG 4 cut(s) 60, 350, 444, 472
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 250, 301
CviAII CATG 1 cut(s) 103
CviJI RGCY 9 cut(s) 65, 100, 185, 295, 377, 415, 431, 458, 470
CviKI_1 RGCY 9 cut(s) 65, 100, 185, 295, 377, 415, 431, 458, 470
CviQI GTAC 2 cut(s) 250, 301
DdeI CTNAG 1 cut(s) 36
DpnI GATC 4 cut(s) 8, 71, 170, 395
DpnII GATC 4 cut(s) 6, 69, 168, 393
Eam1104I CTCTTC 2 cut(s) 115, 396
EarI CTCTTC 2 cut(s) 115, 396
Eco147I AGGCCT 2 cut(s) 65, 458
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 106
FaiI YATR 9 cut(s) 104, 194, 201, 312, 333, 350, 352, 444, 484
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 4 cut(s) 67, 357, 451, 459
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 2 cut(s) 186, 452
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 65, 458
Hin1II CATG 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 235
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 24, 240, 393
Hpy188III TCNNGA 2 cut(s) 47, 224
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 4 cut(s) 131, 137, 265, 320
HpyCH4V TGCA 4 cut(s) 203, 246, 272, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 4 cut(s) 6, 69, 168, 393
LpnPI CCDG 9 cut(s) 23, 60, 119, 146, 196, 209, 232, 272, 322
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 3 cut(s) 67, 208, 259
MaeI CTAG 2 cut(s) 186, 452
MaeIII GTNAC 1 cut(s) 40
MalI GATC 4 cut(s) 8, 71, 170, 395
MboI GATC 4 cut(s) 6, 69, 168, 393
MboII GAAGA 2 cut(s) 102, 413
MluCI AATT 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 98, 335, 397, 448, 486
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 2 cut(s) 437, 477
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 4 cut(s) 6, 69, 168, 393
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 157
PceI AGGCCT 2 cut(s) 65, 458
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 2 cut(s) 251, 302
RsaNI GTAC 2 cut(s) 250, 301
RseI CAYNNNNRTG 2 cut(s) 437, 477
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 6, 69, 168, 393
ScrFI CCNGG 1 cut(s) 134
SfaNI GCATC 3 cut(s) 67, 208, 259
SmiMI CAYNNNNRTG 2 cut(s) 437, 477
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 128
SseBI AGGCCT 2 cut(s) 65, 458
SspMI CTAG 2 cut(s) 186, 452
StuI AGGCCT 2 cut(s) 65, 458
StyD4I CCNGG 1 cut(s) 132
TaqI TCGA 2 cut(s) 113, 126
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 247, 459
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 128
XspI CTAG 2 cut(s) 186, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.