Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003369.1

Orthogroup ID

OG0006928

Physical Location & Seq

Genomic Coordinates Forward (+)

6553 .. 7299

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003369.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggggatcaccaaaatcagtcagaagtttattacccaggtaactccagaaaggatgttcaaggccttgatccttgatgctcacaacctctgtcccaagctcatgttctcatcgattaaaagtattgaattccttgaaggtgaaggagaagttggaaccatcaagcagatcaacttcactgaagctagtcctatgagatatgctaaacacaggattgatgctctggacaaggagaatctgatgtgcaggtacaccttcattgaaagtgatgcagcagaacatttgctggacaagcttgagtacattacctatgatgtgaggtttgaagggtatggcaggggagggtgtatatgtcatttgacaagtgaatacaaagcaaaagatggtattcagatcaaagaagaggacattgagcttggcaaagacagagccattgggatgtatgaagtcttagaggcctaccttatggctcatcctcgtgcatacacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

163

Amino Acids

18.71

Weight (kDa)

5.58

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18951 FvH4_4g18960
malus_domestica	MD13G1161600.v1.1 MD13G1161700.v1.1 MD16G1161000.v1.1
prunus_persica	Prupe.1G128900_v2.0.a1 Prupe.1G129000_v2.0.a1
pyrus_communis	pycom13g13790 pycom16g13640
rosa_chinensis	RchiOBHm_Chr4g0423851 RchiOBHm_Chr4g0423861
rosa_laevigata	RLG00000007525 RLG00000007526
rosa_multiflora	Rmu_co8151796.1_g000001 Rmu_sc0003369.1_g000003 Rmu_sc0003369.1_g000008 Rmu_sc0008198.1_g000005 Rmu_sc0039146.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365970
rosa_rugosa	Rorug04G0191300 Rorug04G0191300 Rorug04G0191400
rosa_samantha	Rh4CG264100 Rh4CG264200
rosa_wichuraiana	Rw4G021480 Rw4G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	14, 64
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	251, 302
AgsI	TTSAA	5 cut(s)	61, 128, 137, 263, 326
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 135, 167
AluBI	AGCT	4 cut(s)	100, 185, 295, 415
AluI	AGCT	4 cut(s)	100, 185, 295, 415
AlwI	GGATC	2 cut(s)	14, 64
AoxI	GGCC	2 cut(s)	63, 456
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	152
BauI	CACGAG	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	167, 377
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	3 cut(s)	67, 208, 259
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	60, 444, 472
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	65, 458
BshVI	ATCGAT	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	65, 458
Bsp143I	GATC	4 cut(s)	6, 69, 168, 393
BspANI	GGCC	2 cut(s)	65, 458
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	14, 64
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	4 cut(s)	6, 69, 168, 393
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	3 cut(s)	60, 444, 472
BstKTI	GATC	4 cut(s)	9, 72, 171, 396
BstMBI	GATC	4 cut(s)	6, 69, 168, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	65, 458
BsuTUI	ATCGAT	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	60, 444, 472
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	250, 301
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	8 cut(s)	65, 100, 185, 295, 415, 431, 458, 470
CviKI_1	RGCY	8 cut(s)	65, 100, 185, 295, 415, 431, 458, 470
CviQI	GTAC	2 cut(s)	250, 301
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	4 cut(s)	8, 71, 170, 395
DpnII	GATC	4 cut(s)	6, 69, 168, 393
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco147I	AGGCCT	2 cut(s)	65, 458
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	106
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	3 cut(s)	67, 451, 459
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	65, 458
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	24, 240, 393
Hpy188III	TCNNGA	2 cut(s)	47, 224
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	4 cut(s)	131, 137, 265, 320
HpyCH4V	TGCA	3 cut(s)	246, 272, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	451
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	6, 69, 168, 393
LpnPI	CCDG	8 cut(s)	23, 50, 60, 196, 209, 232, 272, 322
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	3 cut(s)	67, 208, 259
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	4 cut(s)	8, 71, 170, 395
MboI	GATC	4 cut(s)	6, 69, 168, 393
MboII	GAAGA	1 cut(s)	413
MluCI	AATT	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	98, 312, 335, 397, 448, 486
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	437, 477
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	4 cut(s)	6, 69, 168, 393
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	157
PceI	AGGCCT	2 cut(s)	65, 458
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	2 cut(s)	251, 302
RsaNI	GTAC	2 cut(s)	250, 301
RseI	CAYNNNNRTG	2 cut(s)	437, 477
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	4 cut(s)	6, 69, 168, 393
ScrFI	CCNGG	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	67, 208, 259
SmiMI	CAYNNNNRTG	2 cut(s)	437, 477
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	2 cut(s)	65, 458
SspMI	CTAG	1 cut(s)	186
StuI	AGGCCT	2 cut(s)	65, 458
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	247, 459
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.