Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006928

Physical Location & Seq

Genomic Coordinates Forward (+)

9793169 .. 9795503

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGAATCACCAAGATCAGCCAGAAGTTTGTGACTCAGGTGACGCCACAGAGGATGTTCAACGCCTTGATCTTGGACTCCCACAACCTCTGCCCCAAGCTCATGTTCTCATCAATTAAAAGTATTGAATTCCTTAGTGGTTCAGGAGAAGTTGGAACCATCAAACAGATCAACTTCACTGAAGCTAGTCCTATGAAATATGTTAAGCACAGGATTGATGCTTTGGACAAGGAGGCCCTCAGCTGCAGCTACACCTTCATCGAAAGCGACGCGTCGGATCGCTTGATGGACAAGCTTGAATACATAACTTATGATGTCAAGTTTGAGGGGTATGGAAGAGGAGGATGCATCTGTCATTTGACCAGCACATACAAAGCCAAAGACGATATTCAGATCAAAGAAGAAGACATTGAGCTTGGCAAGGATAGAGCTATTGGGATGTATGAAGTTTTGGAAGCCTACCTCATGGCACACCCTCCTGCTATTACAACTAATCTACAAATTATGGGTGTGACAAGTATAACACAGGAGTTCCTCTGCCCAATCGCCCCGGCGCGCATGTTCAAGGCTTTGATCATAGACTCAAAAAATCTGATACCAAAGCTGTTGCCTCAGTTCATCGCAAGCGTCGATGTAAAACAGGGAGATGGAGGAGCAGGAAGCATTGAACAGGTCAATTTCACAGAAGGTAGCCATTTCAGATACGTGAAGCACCGGATTGATGAACTTGACATAGAGAATTTTGTGTGCAAGTACACTATGATTGAAGGGGATGCATTAGGTGAGAAGCTTGAGTCTATTGCTTATGAGGTGAAGTTTGAGGCAGCTAGTGATGGGAGCTCAATCTGCAAGATGACAAGTAAATACAACACCATTGGGGAGTTTGAGGTCAAAGAAGAGGAAATCATAGCAGGCAAGAACAGTGCTATCGGGATATACAAAGTTGTGGAAGCCTACCTCTTGGAGAACCCAAATGTTTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

329

Amino Acids

36.66

Weight (kDa)

5.11

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18951 FvH4_4g18960
malus_domestica	MD13G1161600.v1.1 MD13G1161700.v1.1 MD16G1161000.v1.1
prunus_persica	Prupe.1G128900_v2.0.a1 Prupe.1G129000_v2.0.a1
pyrus_communis	pycom13g13790 pycom16g13640
rosa_chinensis	RchiOBHm_Chr4g0423851 RchiOBHm_Chr4g0423861
rosa_laevigata	RLG00000007525 RLG00000007526
rosa_multiflora	Rmu_co8151796.1_g000001 Rmu_sc0003369.1_g000003 Rmu_sc0003369.1_g000008 Rmu_sc0008198.1_g000005 Rmu_sc0039146.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365970
rosa_rugosa	Rorug04G0191300 Rorug04G0191300 Rorug04G0191400
rosa_samantha	Rh4CG264100 Rh4CG264200
rosa_wichuraiana	Rw4G021480 Rw4G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	272, 556
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	128, 739
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	6 cut(s)	61, 128, 299, 565, 668, 767
AjuI	GAANNNNNNNTTGG	3 cut(s)	89, 121, 964
Alw21I	GWGCWC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	243, 246, 824
ApoI	RAATTY	2 cut(s)	128, 739
AspLEI	GCGC	2 cut(s)	556, 558
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	52, 794, 823
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	842
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	230, 258, 836
BccI	CCATC	4 cut(s)	167, 280, 641, 827
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	551
BfaI	CTAG	2 cut(s)	186, 828
BfmI	CTRYAG	1 cut(s)	244
BisI	GCNGC	3 cut(s)	244, 247, 825
BlsI	GCNGC	3 cut(s)	245, 248, 826
Bme1390I	CCNGG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	4 cut(s)	208, 335, 357, 763
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	706
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	4 cut(s)	60, 350, 444, 778
BseMII	CTCAG	3 cut(s)	50, 253, 626
BsePI	GCGCGC	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	354, 666
BseXI	GCAGC	3 cut(s)	230, 258, 836
Bsh1236I	CGCG	2 cut(s)	272, 556
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	2 cut(s)	551, 715
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp143I	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	3 cut(s)	49, 252, 625
BspFNI	CGCG	2 cut(s)	272, 556
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	549
BssHII	GCGCGC	1 cut(s)	554
BssMI	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	923
Bst6I	CTCTTC	2 cut(s)	331, 891
BstACI	GRCGYC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	706
BstC8I	GCNNGC	3 cut(s)	556, 625, 913
BstDEI	CTNAG	4 cut(s)	36, 134, 239, 612
BstF5I	GGATG	4 cut(s)	60, 350, 444, 778
BstFNI	CGCG	2 cut(s)	272, 556
BstHHI	GCGC	2 cut(s)	556, 558
BstKTI	GATC	6 cut(s)	18, 72, 171, 280, 396, 576
BstMBI	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	2 cut(s)	272, 556
BstV1I	GCAGC	3 cut(s)	230, 258, 836
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	4 cut(s)	60, 350, 444, 778
BtsIMutI	CAGTG	2 cut(s)	177, 928
Cac8I	GCNNGC	3 cut(s)	556, 625, 913
CfoI	GCGC	2 cut(s)	556, 558
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	4 cut(s)	52, 261, 278, 616
Csp6I	GTAC	1 cut(s)	754
CviAII	CATG	3 cut(s)	103, 466, 559
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	4 cut(s)	36, 134, 239, 612
DpnI	GATC	6 cut(s)	17, 71, 170, 279, 395, 575
DpnII	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
Eam1104I	CTCTTC	2 cut(s)	331, 891
EarI	CTCTTC	2 cut(s)	331, 891
Ecl136II	GAGCTC	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	842
Eco53kI	GAGCTC	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	128
EcoT22I	ATGCAT	2 cut(s)	350, 778
EcoT38I	GRGCYC	1 cut(s)	842
FaeI	CATG	3 cut(s)	106, 469, 562
FatI	CATG	3 cut(s)	102, 465, 558
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	3 cut(s)	244, 247, 825
FokI	GGATG	4 cut(s)	67, 357, 451, 785
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	3 cut(s)	244, 247, 825
FspBI	CTAG	2 cut(s)	186, 828
GlaI	GCGC	2 cut(s)	555, 557
GluI	GCNGC	3 cut(s)	244, 247, 825
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	2 cut(s)	551, 715
HgaI	GACGC	4 cut(s)	52, 261, 278, 616
HhaI	GCGC	2 cut(s)	556, 558
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	106, 469, 562
Hin6I	GCGC	2 cut(s)	554, 556
HinP1I	GCGC	2 cut(s)	554, 556
HindIII	AAGCTT	2 cut(s)	293, 788
HinfI	GANTC	5 cut(s)	6, 34, 77, 581, 794
HpaII	CCGG	2 cut(s)	551, 715
HphI	GGTGA	3 cut(s)	52, 794, 823
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	277, 393, 594, 701
Hpy188III	TCNNGA	3 cut(s)	144, 931, 984
Hpy8I	GTNNAC	1 cut(s)	756
Hpy99I	CGWCG	3 cut(s)	272, 277, 632
HpyAV	CCTTC	3 cut(s)	265, 680, 761
HpyCH4III	ACNGT	1 cut(s)	923
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	5 cut(s)	246, 348, 750, 776, 849
HpyF10VI	GCNNNNNNNGC	1 cut(s)	846
HpyF3I	CTNAG	4 cut(s)	36, 134, 239, 612
HpySE526I	ACGT	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	106, 469, 562
HspAI	GCGC	2 cut(s)	554, 556
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
LmnI	GCTCC	2 cut(s)	653, 837
Lsp1109I	GCAGC	3 cut(s)	230, 258, 836
LweI	GCATC	4 cut(s)	208, 335, 357, 763
MaeI	CTAG	2 cut(s)	186, 828
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	3 cut(s)	31, 40, 511
MalI	GATC	6 cut(s)	17, 71, 170, 279, 395, 575
MboI	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
MboII	GAAGA	4 cut(s)	348, 413, 416, 908
MhlI	GDGCHC	1 cut(s)	842
MluCI	AATT	5 cut(s)	114, 128, 501, 676, 739
MluI	ACGCGT	1 cut(s)	270
MlyI	GAGTC	4 cut(s)	28, 71, 575, 803
MmeI	TCCRAC	2 cut(s)	133, 255
Mph1103I	ATGCAT	2 cut(s)	350, 778
MseI	TTAA	2 cut(s)	117, 204
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	551, 715
MspR9I	CCNGG	1 cut(s)	551
MvnI	CGCG	2 cut(s)	272, 556
MwoI	GCNNNNNNNGC	1 cut(s)	846
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
NlaIII	CATG	3 cut(s)	106, 469, 562
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	31, 40, 511
NsiI	ATGCAT	2 cut(s)	350, 778
NspI	RCATGY	1 cut(s)	562
PauI	GCGCGC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	245, 248, 826
PleI	GAGTC	4 cut(s)	28, 71, 575, 802
PpsI	GAGTC	4 cut(s)	28, 71, 575, 802
Ppu21I	YACGTR	1 cut(s)	706
Psp124BI	GAGCTC	1 cut(s)	842
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	248
PteI	GCGCGC	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	117, 204
SatI	GCNGC	3 cut(s)	244, 247, 825
Sau3AI	GATC	6 cut(s)	15, 69, 168, 277, 393, 573
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	4 cut(s)	28, 71, 575, 803
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	842
SfaNI	GCATC	4 cut(s)	208, 335, 357, 763
SfcI	CTRYAG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	5 cut(s)	114, 128, 501, 676, 739
SspMI	CTAG	2 cut(s)	186, 828
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	923
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	261, 630
TasI	AATT	5 cut(s)	114, 128, 501, 676, 739
TatI	WGTACW	1 cut(s)	753
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	2 cut(s)	117, 204
Tru9I	TTAA	2 cut(s)	117, 204
TscAI	CASTG	2 cut(s)	184, 928
TseFI	GTSAC	3 cut(s)	31, 40, 511
TseI	GCWGC	3 cut(s)	243, 246, 824
Tsp45I	GTSAC	3 cut(s)	31, 40, 511
TspDTI	ATGAA	5 cut(s)	209, 247, 459, 607, 738
TspRI	CASTG	2 cut(s)	184, 928
XapI	RAATTY	2 cut(s)	128, 739
XceI	RCATGY	1 cut(s)	562
XspI	CTAG	2 cut(s)	186, 828
Zsp2I	ATGCAT	2 cut(s)	350, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.