Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006928

Physical Location & Seq

Genomic Coordinates Forward (+)

9750501 .. 9751236

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTGTCACCAAGATCAGCCAGAAGTTTGTGACTCAGGTGACGCCACAGAGGATGTTCAACGCCTTGATCTTGGATGCCCACAACATCTGCCCCAAGCTCATGTTCTCATCAATTAAAAGTATTGAATTCCTTAGCGGTTCAGGAGAAGTTGGAACCATCAAACAGATCAACTTCACTGAAGCTAGTCCTATGAAATATGCTAAGCACAGGATTGATGCTTTGGACAAGGAGGCACTCAGCTGCACCTACACCTTCATCGAAAGCGATGCAACGGATCGATCTGACTTGTTGGACAAGCTTGAATACATAACATATGAAGTCAAGTTTGAGGGGTATGGAAGAGGAGGATGCATCTGTCATTTGACCAGCACATACAAAACCAAAGATGATATGCAGATCAAAGAAGAAGACATTGAGCTTGGCAAGGATAGAGCTATTGGGATGTATGAAGTTTTGGAAGCCTACCTCATGGCGCACCCTCGCGCCTACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

166

Amino Acids

18.72

Weight (kDa)

5.59

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18951 FvH4_4g18960
malus_domestica	MD13G1161600.v1.1 MD13G1161700.v1.1 MD16G1161000.v1.1
prunus_persica	Prupe.1G128900_v2.0.a1 Prupe.1G129000_v2.0.a1
pyrus_communis	pycom13g13790 pycom16g13640
rosa_chinensis	RchiOBHm_Chr4g0423851 RchiOBHm_Chr4g0423861
rosa_laevigata	RLG00000007525 RLG00000007526
rosa_multiflora	Rmu_co8151796.1_g000001 Rmu_sc0003369.1_g000003 Rmu_sc0003369.1_g000008 Rmu_sc0008198.1_g000005 Rmu_sc0039146.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365970
rosa_rugosa	Rorug04G0191300 Rorug04G0191300 Rorug04G0191400
rosa_samantha	Rh4CG264100 Rh4CG264200
rosa_wichuraiana	Rw4G021480 Rw4G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	486
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	61, 128, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	6 cut(s)	100, 185, 243, 301, 421, 437
AluI	AGCT	6 cut(s)	100, 185, 243, 301, 421, 437
AlwI	GGATC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	478, 488
AsuHPI	GGTGA	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	244
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	5 cut(s)	67, 208, 259, 341, 363
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	280
BseGI	GGATG	4 cut(s)	60, 82, 356, 450
BseMII	CTCAG	2 cut(s)	50, 253
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	486
BshVI	ATCGAT	1 cut(s)	280
Bsp143I	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	49, 252
BspDI	ATCGAT	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	285
BssMI	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
BssNI	GRCGYC	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	4 cut(s)	36, 134, 204, 239
BstF5I	GGATG	4 cut(s)	60, 82, 356, 450
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	478, 488
BstKTI	GATC	6 cut(s)	18, 72, 171, 280, 284, 402
BstMBI	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	417
Bsu15I	ATCGAT	1 cut(s)	280
BsuTUI	ATCGAT	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	4 cut(s)	60, 82, 356, 450
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	2 cut(s)	478, 488
ClaI	ATCGAT	1 cut(s)	280
CseI	GACGC	1 cut(s)	52
CviAII	CATG	2 cut(s)	103, 472
CviJI	RGCY	8 cut(s)	21, 100, 185, 243, 301, 421, 437, 464
CviKI_1	RGCY	8 cut(s)	21, 100, 185, 243, 301, 421, 437, 464
DdeI	CTNAG	4 cut(s)	36, 134, 204, 239
DpnI	GATC	6 cut(s)	17, 71, 170, 279, 283, 401
DpnII	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	356
FaeI	CATG	2 cut(s)	106, 475
FatI	CATG	2 cut(s)	102, 471
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	4 cut(s)	67, 89, 363, 457
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	2 cut(s)	477, 487
GluI	GCNGC	1 cut(s)	244
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	478, 488
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	106, 475
Hin6I	GCGC	2 cut(s)	476, 486
HinP1I	GCGC	2 cut(s)	476, 486
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	286, 497
Hpy188III	TCNNGA	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	4 cut(s)	246, 272, 354, 397
HpyF3I	CTNAG	4 cut(s)	36, 134, 204, 239
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	106, 475
HspAI	GCGC	2 cut(s)	476, 486
Kzo9I	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
LpnPI	CCDG	5 cut(s)	23, 35, 129, 196, 382
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	5 cut(s)	67, 208, 259, 341, 363
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	7, 31, 40
MalI	GATC	6 cut(s)	17, 71, 170, 279, 283, 401
MboI	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
MboII	GAAGA	3 cut(s)	354, 419, 422
MluCI	AATT	2 cut(s)	114, 128
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	133, 273
MnlI	CCTC	7 cut(s)	45, 226, 325, 338, 341, 479, 492
Mph1103I	ATGCAT	1 cut(s)	356
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
NlaIII	CATG	2 cut(s)	106, 475
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	7, 31, 40
NsiI	ATGCAT	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	6 cut(s)	15, 69, 168, 277, 281, 399
SchI	GAGTC	1 cut(s)	28
SfaNI	GCATC	5 cut(s)	67, 208, 259, 341, 363
Sse9I	AATT	2 cut(s)	114, 128
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	261, 280
TasI	AATT	2 cut(s)	114, 128
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	3 cut(s)	7, 31, 40
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	3 cut(s)	7, 31, 40
TspDTI	ATGAA	4 cut(s)	209, 247, 333, 465
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.