Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006928

Physical Location & Seq

Genomic Coordinates Forward (+)

10057308 .. 10058484

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGTGTGACAAGTATTACACAGGAGTTCCTGTGCCCAATTGCCCCGGCACGCATGTTCAAGGCTCTAATCATAGACTCTAAAAATTTGATACCAAGGCTGTTGCCCCAGTTCATAGCAAGCGTTGATGTCACTCAAGGAGATGGGGGAGCAGGAAGCATTGAACAAGTCAACTTCACAGAAGCCAGCCATTTCAGATACGTGAAGCACCGAATCGATGAACTTGACCAAGATAATTTTGTGTGCAAGTACACCATGATTGAAGGGGATGCATTAGGTGACAAGCTTGACTCGATTGCTTATGAGGTCAAGTTTGAGGCAGCCAGTGATGGGAGCTCAATCTGCAAGATGACAAGTAAATACAACACCATAGGGGAGTTTGAGGTCAAAGAAGAGGAAATAATATCAGGAAAGAAGAGTGCTATGGGGATATACAAAGTTGTGGAAGCCTACCTCTTGGAGAACCCACATGTTTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

4.98

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18951 FvH4_4g18960
malus_domestica	MD13G1161600.v1.1 MD13G1161700.v1.1 MD16G1161000.v1.1
prunus_persica	Prupe.1G128900_v2.0.a1 Prupe.1G129000_v2.0.a1
pyrus_communis	pycom13g13790 pycom16g13640
rosa_chinensis	RchiOBHm_Chr4g0423851 RchiOBHm_Chr4g0423861
rosa_laevigata	RLG00000007525 RLG00000007526
rosa_multiflora	Rmu_co8151796.1_g000001 Rmu_sc0003369.1_g000003 Rmu_sc0003369.1_g000008 Rmu_sc0008198.1_g000005 Rmu_sc0039146.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365970
rosa_rugosa	Rorug04G0191300 Rorug04G0191300 Rorug04G0191400
rosa_samantha	Rh4CG264100 Rh4CG264200
rosa_wichuraiana	Rw4G021480 Rw4G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	61, 164, 263
AluBI	AGCT	2 cut(s)	286, 336
AluI	AGCT	2 cut(s)	286, 336
Alw21I	GWGCWC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	137, 323
BcnI	CCSGG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	45, 95
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	109, 324
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	45, 95
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	109, 324
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	38, 338
BspDI	ATCGAT	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	109, 324
BssECI	CCNNGG	2 cut(s)	45, 95
BssT1I	CCWWGG	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	387, 410
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	52, 121, 187
BstF5I	GGATG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNSI	RCATGY	2 cut(s)	58, 473
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	52, 121, 187
ClaI	ATCGAT	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	55, 256, 470
CviJI	RGCY	8 cut(s)	65, 100, 185, 189, 286, 323, 336, 449
CviKI_1	RGCY	8 cut(s)	65, 100, 185, 189, 286, 323, 336, 449
CviQI	GTAC	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	387, 410
EarI	CTCTTC	2 cut(s)	387, 410
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	58, 259, 473
FaiI	YATR	9 cut(s)	56, 74, 116, 257, 303, 371, 425, 433, 471
FatI	CATG	3 cut(s)	54, 255, 469
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	3 cut(s)	58, 259, 473
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	77, 213, 290
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	172, 252
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	408, 480
Hpy8I	GTNNAC	2 cut(s)	172, 252
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	246, 272, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	58, 259, 473
LmnI	GCTCC	2 cut(s)	149, 333
LpnPI	CCDG	8 cut(s)	8, 44, 60, 122, 138, 199, 337, 393
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	7, 130, 278
MboII	GAAGA	2 cut(s)	404, 427
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	38, 338
MluCI	AATT	3 cut(s)	39, 85, 235
MlyI	GAGTC	2 cut(s)	71, 284
MnlI	CCTC	5 cut(s)	298, 310, 376, 388, 464
Mph1103I	ATGCAT	1 cut(s)	274
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	58, 259, 473
NmuCI	GTSAC	3 cut(s)	7, 130, 278
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	2 cut(s)	58, 473
PciI	ACATGT	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	71, 284
PpsI	GAGTC	2 cut(s)	71, 284
Ppu21I	YACGTR	1 cut(s)	202
PscI	ACATGT	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	338
SatI	GCNGC	1 cut(s)	321
SchI	GAGTC	2 cut(s)	71, 284
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	38, 338
SetI	ASST	7 cut(s)	204, 280, 288, 309, 338, 387, 456
SfaNI	GCATC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	3 cut(s)	39, 85, 235
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	216, 293
TasI	AATT	3 cut(s)	39, 85, 235
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	7, 130, 278
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	3 cut(s)	7, 130, 278
TspDTI	ATGAA	2 cut(s)	103, 234
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	2 cut(s)	58, 473
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.