Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004855

Physical Location & Seq

Genomic Coordinates Reverse (-)

24806750 .. 24807784

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATGCCGATCCTTCTAAGCACAATCCTCATGAACACATGCTTAGCACAACTGCAAACTCTTTCCGTCCAACAAGGAATCCTCATGAACACACGCATTGGCAGTTTTGATGTTCCTGCAGCCACAATTCCAGTCATTCCTTTGCTATTCATGTCTTTTCTTATCCCCATCTATGAGTTCACTTTCGTTCCCCTTTTGCGCAAGTTCACTGGTAACCCCAATGGCATAACCCACCTCCAGAGAGTTGGTGTTGGTCTTGTGCTCTCAGCTATCTCCATGACTATAGCAGGGTTTGTGGAGGTGAAGAGAAAACATGAGTTCATTCACCACAATCACAAGATCAGCCTCTTTTGGCTGGCATTTCACTATGCAATTTTCGGCATTGCAGACATGTTCACACTTGTAGGGTTGATGGAGTTCTTCTATAGAGAAGCTCCTACTGGCATGAGGTCTCTGTCTACTTCATTTTCCTGGCTTTCACTTTCCATTGGGTACTACCTGAGCTCAGCTTTTGTAGAGCTCGTCAACTCTATCACTGGTAACTTTACAGACAGCAAGTTAGGGTGGCTCGAGGGGCGTGACATGAACAAGAACCACATAGACTATTTCTACTGGTTTTTGGCGATTCTCAGCGTGCTTAACTTTGCAAATTATCTTTTCTGGGCCAACTGGTACACATATAAGAACGATGTTACAGTCGATGAGGAGATGGTAATCAAAGCAGACCAAGTTGGAGCTGATACATCTCAGTCTGCAAGTGCAACTTGTGCAAGTGTAAGCTTTGTGTCCAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

266

Amino Acids

29.92

Weight (kDa)

6.36

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 182	1e-38	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21811 FvH4_4g21812 FvH4_6g08650 FvH4_6g08650
malus_domestica	MD04G1184500.v1.1 MD12G1197600.v1.1 MD12G1197700.v1.1 MD13G1136700.v1.1 MD16G1132000.v1.1
prunus_persica	Prupe.1G208700_v2.0.a1 Prupe.6G303000_v2.0.a1
pyrus_communis	pycom04g16360
rosa_chinensis	RchiOBHm_Chr3g0458781 RchiOBHm_Chr4g0428051
rosa_laevigata	RLG00000007186 RLG00000025135
rosa_multiflora	Rmu_co8474865.1_g000001 Rmu_sc0001634.1_g000029
rosa_roxburghii	Rroxscaffold_5G00369770 Rroxscaffold_6G00420790
rosa_rugosa	Rorug03G0031800
rosa_samantha	Rh3AG089500 Rh3BG092400 Rh3CG092700 Rh3DG093400 Rh4AG279100 Rh4BG284500 Rh4CG300200 Rh4DG281600
rosa_wichuraiana	Rw3G007660 Rw4G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	494, 674
AflIII	ACRYGT	1 cut(s)	390
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	7 cut(s)	269, 434, 504, 509, 520, 737, 780
AluI	AGCT	7 cut(s)	269, 434, 504, 509, 520, 737, 780
Alw21I	GWGCWC	3 cut(s)	264, 506, 522
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	313, 317
AvaI	CYCGRG	1 cut(s)	569
BanII	GRGCYC	2 cut(s)	506, 522
Bbv12I	GWGCWC	3 cut(s)	264, 506, 522
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	176, 406, 703
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	456
BfmI	CTRYAG	3 cut(s)	117, 282, 424
BisI	GCNGC	1 cut(s)	120
BlpI	GCTNAGC	2 cut(s)	43, 505
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu1102I	GCTNAGC	2 cut(s)	43, 505
BsaBI	GATNNNNATC	2 cut(s)	8, 713
BsaI	GGTCTC	1 cut(s)	456
Bse1I	ACTGG	6 cut(s)	131, 214, 445, 541, 617, 674
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	2 cut(s)	8, 713
BseBI	CCWGG	1 cut(s)	472
BseJI	GATNNNNATC	2 cut(s)	8, 713
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	5 cut(s)	279, 491, 519, 643, 761
BseNI	ACTGG	6 cut(s)	131, 214, 445, 541, 617, 674
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	264, 506, 522
BsiHKCI	CYCGRG	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	665
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	3 cut(s)	264, 506, 522
Bsp143I	GATC	2 cut(s)	9, 339
Bsp1720I	GCTNAGC	2 cut(s)	43, 505
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	5 cut(s)	278, 492, 518, 642, 760
BspHI	TCATGA	2 cut(s)	30, 84
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	6 cut(s)	131, 214, 445, 541, 617, 674
BssMI	GATC	2 cut(s)	9, 339
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	357, 635
BstDEI	CTNAG	7 cut(s)	17, 43, 265, 500, 505, 629, 747
BstEII	GGTNACC	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	12, 342
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	2 cut(s)	9, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 767
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	2 cut(s)	42, 394
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	470
BstSFI	CTRYAG	3 cut(s)	117, 282, 424
BstV1I	GCAGC	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	665
BtsIMutI	CAGTG	2 cut(s)	207, 534
Cac8I	GCNNGC	2 cut(s)	357, 635
CciI	TCATGA	2 cut(s)	30, 84
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	493, 673
CviAII	CATG	9 cut(s)	31, 39, 85, 151, 277, 314, 391, 445, 583
CviQI	GTAC	2 cut(s)	493, 673
DdeI	CTNAG	7 cut(s)	17, 43, 265, 500, 505, 629, 747
DpnI	GATC	2 cut(s)	11, 341
DpnII	GATC	2 cut(s)	9, 339
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Ecl136II	GAGCTC	2 cut(s)	504, 520
Eco24I	GRGCYC	2 cut(s)	506, 522
Eco31I	GGTCTC	1 cut(s)	456
Eco53kI	GAGCTC	2 cut(s)	504, 520
Eco88I	CYCGRG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	212
EcoICRI	GAGCTC	2 cut(s)	504, 520
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	506, 522
FaeI	CATG	9 cut(s)	34, 42, 88, 154, 280, 317, 394, 448, 586
FalI	AAGNNNNNCTT	2 cut(s)	748, 780
FatI	CATG	9 cut(s)	30, 38, 84, 150, 276, 313, 390, 444, 582
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	120
FriOI	GRGCYC	2 cut(s)	506, 522
Fsp4HI	GCNGC	1 cut(s)	120
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	9 cut(s)	34, 42, 88, 154, 280, 317, 394, 448, 586
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	2 cut(s)	78, 625
HphI	GGTGA	2 cut(s)	313, 317
Hpy166II	GTNNAC	6 cut(s)	180, 207, 396, 459, 526, 675
Hpy188III	TCNNGA	3 cut(s)	31, 85, 238
Hpy8I	GTNNAC	6 cut(s)	180, 207, 396, 459, 526, 675
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4V	TGCA	8 cut(s)	55, 119, 371, 386, 647, 755, 761, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 767
HpyF3I	CTNAG	7 cut(s)	17, 43, 265, 500, 505, 629, 747
Hsp92II	CATG	9 cut(s)	34, 42, 88, 154, 280, 317, 394, 448, 586
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	9, 339
LmnI	GCTCC	2 cut(s)	439, 734
Lsp1109I	GCAGC	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	212, 539, 578, 691
MalI	GATC	2 cut(s)	11, 341
MboI	GATC	2 cut(s)	9, 339
MboII	GAAGA	2 cut(s)	316, 412
MhlI	GDGCHC	3 cut(s)	264, 506, 522
MluCI	AATT	3 cut(s)	126, 372, 649
MmeI	TCCRAC	2 cut(s)	94, 712
MnlI	CCTC	8 cut(s)	38, 92, 245, 292, 356, 441, 565, 697
MseI	TTAA	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	574, 767
NdeII	GATC	2 cut(s)	9, 339
NlaIII	CATG	9 cut(s)	34, 42, 88, 154, 280, 317, 394, 448, 586
NmuCI	GTSAC	1 cut(s)	578
NsbI	TGCGCA	1 cut(s)	200
NspI	RCATGY	2 cut(s)	42, 394
PaeR7I	CTCGAG	1 cut(s)	569
PagI	TCATGA	2 cut(s)	30, 84
PciI	ACATGT	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	78, 625
PkrI	GCNGC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	390
Psp124BI	GAGCTC	2 cut(s)	506, 522
Psp6I	CCWGG	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	663
PspXI	VCTCGAGB	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	494, 674
RsaNI	GTAC	2 cut(s)	493, 673
SacI	GAGCTC	2 cut(s)	506, 522
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	9, 339
Sau96I	GGNCC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	3 cut(s)	264, 506, 522
SfcI	CTRYAG	3 cut(s)	117, 282, 424
Sfr274I	CTCGAG	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	126, 372, 649
SstI	GAGCTC	2 cut(s)	506, 522
StyD4I	CCNGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	570, 699
TasI	AATT	3 cut(s)	126, 372, 649
TfiI	GAWTC	2 cut(s)	78, 625
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	214, 541
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	6 cut(s)	47, 101, 139, 310, 453, 599
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	214, 541
XceI	RCATGY	2 cut(s)	42, 394
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.