Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004855

Physical Location & Seq

Genomic Coordinates Forward (+)

14330596 .. 14333072

Gene Structure 2477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGGGTTGGACAGTGAAATTGGAAATGGATCGAACAAAGAGCTAGCTTATGAATCTATGAAGAAACAAGAAAGAGAAGGCGGATTTAAGGCCAACTATTTCATCTTTGCTATGATGTTTCTGGATAACATAGGGTTTGTGGCTAACATGGCAAGCCTTGTTCTATACTTTATGCTTGTGATACACTTTGACATCTCTGGCTCTGCTACCACCACAACAAACTACTTGGGTTCTGCATTCTTGCTTACATTAGTTGGAGGATTCATCTCTGATGCCTACATGAATCGCCTCAACACCACTCTACTCTTCGGTGTGGCAGAACTGTTGGGATATTTGTTGTTGATTATTCAATCCCATTATACAAAACTGCAACCTTTACCATGTGGTGAATCAACCTGCGTTCATGGCACAAAAGCCTTGCTGTTTTATACTTCAATATCCTTAGTTGCACTGGGAGGAGGTGGAATCAGAGGAGCGATTCCTGCTTTAGGTGCTGACCAGTTCAACTACAAGAAACCCGAAGAGCGCAAGCATATAGCTAGCTTTTTCAACTGGCTTTTGCTTAACATAGGATTTATCATCTCCTTGTCTTGTGCTGCTGCTGGTCTTGTCATTGTTGCTTTGGGAAAGCCATATTATCGTGTTCGAATTCCAGGAGAAAGTCCTTTACTAAGGGTTTTACAGGTTTTGGTGGCAAGTGTAAAGAACTGGAGGGTTCAGGTGCCTCAGAGTCCTGATGAACTACATGAATCCACTAAAAAGAGAGAGAGAATCCCCCACACCGACCAATTCAGATTACTAGACAAGGCTGCCATTCTCCCTAACGGTGTCGATGATGCAACTGCATCAAAATGGAAAGTTTGTACAGTAACACAGGTGGAGGAAGTGAAGATCCTCACAAGGATGATGCCTATTCTTCTAAGCACAATCCTCATGAACACATGCTTGGCACAACTGCAAACTCTTTCCGTCCAACAAGGAACCCTCATGGACACACGCATTGGTAGTTTTAATGTTCCAGCAGCCACAATTCCAGTCATTCCTCTACTATTCATGTCTGTTCTTATCCCCACCTACGAGTTCACTTTCGTTCCCCTTTTGCGCAAGTTCACTGGTCACCCCAATGGCATAACCCACCTCCAGAGAGTTGGTGTTGGGCTTGTCCTCTCAGCTATCTCCATGACTATAGCGGGGTTCGTGGAAGTGAAGAGAAAGCATGAGTTCATTCACCACAATCACAAGATCAGCCTCTTTTGGCTCTCATTTCACTATGCCATTTTCGGCATTGCAGACATGTTCACACTTGTGGGGTTGATGGAGTTCTTTTATAGAGAAGCTCCTGCTGGCATGAGGTCTCTGTCTACTTCATTTTCTTGGCTTTCTCTGTCCATTGGGTACTATCTGAGCTCAGCTTTTGTAGAGCTCATTAACTCTATCACTGGCAAGTATACACACAGCAAGTTAGGGTGGCTAGAGGGTCTTGACATGAACAAGAACCACATAGAACTTTTCTACTGGTTTTTGGCGATTCTGAGCGTGCTTAACTTCGCAAATTATCTTTTCTGGGCCAACTGGTACACGTATAAGAACGATGTTACAGTCGATGAGGAAATGCCAATCAAAGCAGGCCAAGTTGGAGCTGATGAATCTAACTCACTAAGTGTAAGCACTGTGTCCAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

562

Amino Acids

62.56

Weight (kDa)

8.39

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	98 - 197	5.2e-12	POT family
PTR2	PF00854	190 - 485	4.5e-56	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21811 FvH4_4g21812 FvH4_6g08650 FvH4_6g08650
malus_domestica	MD04G1184500.v1.1 MD12G1197600.v1.1 MD12G1197700.v1.1 MD13G1136700.v1.1 MD16G1132000.v1.1
prunus_persica	Prupe.1G208700_v2.0.a1 Prupe.6G303000_v2.0.a1
pyrus_communis	pycom04g16360
rosa_chinensis	RchiOBHm_Chr3g0458781 RchiOBHm_Chr4g0428051
rosa_laevigata	RLG00000007186 RLG00000025135
rosa_multiflora	Rmu_co8474865.1_g000001 Rmu_sc0001634.1_g000029
rosa_roxburghii	Rroxscaffold_5G00369770 Rroxscaffold_6G00420790
rosa_rugosa	Rorug03G0031800
rosa_samantha	Rh3AG089500 Rh3BG092400 Rh3CG092700 Rh3DG093400 Rh4AG279100 Rh4BG284500 Rh4CG300200 Rh4DG281600
rosa_wichuraiana	Rw3G007660 Rw4G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1103
Acc36I	ACCTGC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	721
AccI	GTMKAC	2 cut(s)	1361, 1448
AciI	CCGC	2 cut(s)	81, 1190
AclWI	GGATC	2 cut(s)	37, 886
AcsI	RAATTY	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	1661
AfaI	GTAC	3 cut(s)	865, 1397, 1577
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	2 cut(s)	1293, 1578
AgsI	TTSAA	4 cut(s)	350, 435, 505, 550
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	929, 961
AleI	CACNNNNGTG	1 cut(s)	1304
Alw21I	GWGCWC	2 cut(s)	1409, 1425
Alw26I	GTCTC	1 cut(s)	1359
AlwI	GGATC	2 cut(s)	37, 886
AoxI	GGCC	3 cut(s)	90, 1566, 1627
ApeKI	GCWGC	4 cut(s)	596, 599, 809, 1022
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	528, 1104
AspS9I	GGNCC	1 cut(s)	1566
AsuHPI	GGTGA	3 cut(s)	398, 1109, 1220
AsuII	TTCGAA	1 cut(s)	646
AsuNHI	GCTAGC	2 cut(s)	43, 539
BanI	GGYRCC	1 cut(s)	721
BanII	GRGCYC	2 cut(s)	1409, 1425
Bbv12I	GWGCWC	2 cut(s)	1409, 1425
BbvI	GCAGC	4 cut(s)	583, 586, 796, 1034
BccI	CCATC	1 cut(s)	1309
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	1359
BfaI	CTAG	5 cut(s)	44, 540, 800, 1472, 1684
BfmI	CTRYAG	1 cut(s)	1185
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	4 cut(s)	597, 600, 810, 1023
BlpI	GCTNAGC	1 cut(s)	1408
BlsI	GCNGC	4 cut(s)	598, 601, 811, 1024
Bme1390I	CCNGG	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	1566
BmiI	GGNNCC	2 cut(s)	723, 982
BmrFI	CCNGG	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	4 cut(s)	262, 826, 854, 897
BmtI	GCTAGC	2 cut(s)	47, 543
BmuI	ACTGGG	1 cut(s)	461
BpmI	CTGGAG	2 cut(s)	730, 1124
Bpu1102I	GCTNAGC	1 cut(s)	1408
Bpu14I	TTCGAA	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	1581
BsaI	GGTCTC	1 cut(s)	1359
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	9 cut(s)	456, 499, 557, 713, 1034, 1117, 1444, 1520, 1577
Bse3DI	GCAATG	1 cut(s)	1284
BseBI	CCWGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	909
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	5 cut(s)	740, 1182, 1394, 1422, 1523
BseNI	ACTGG	9 cut(s)	456, 499, 557, 713, 1034, 1117, 1444, 1520, 1577
BseRI	GAGGAG	2 cut(s)	471, 486
BseXI	GCAGC	4 cut(s)	583, 586, 796, 1034
BshFI	GGCC	3 cut(s)	92, 1568, 1629
BshNI	GGYRCC	1 cut(s)	721
BsiHKAI	GWGCWC	2 cut(s)	1409, 1425
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	1359
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	92, 1568, 1629
Bso31I	GGTCTC	1 cut(s)	1359
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	1409, 1425
Bsp1407I	TGTACA	1 cut(s)	863
Bsp143I	GATC	3 cut(s)	29, 891, 1242
Bsp1720I	GCTNAGC	1 cut(s)	1408
BspACI	CCGC	2 cut(s)	81, 1190
BspANI	GGCC	3 cut(s)	92, 1568, 1629
BspCNI	CTCAG	5 cut(s)	739, 1181, 1395, 1421, 1524
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	2 cut(s)	723, 982
BspMI	ACCTGC	1 cut(s)	404
BspOI	GCTAGC	2 cut(s)	47, 543
BspPI	GGATC	2 cut(s)	37, 886
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	1359
BsrDI	GCAATG	1 cut(s)	1284
BsrGI	TGTACA	1 cut(s)	863
BsrI	ACTGG	9 cut(s)	456, 499, 557, 713, 1034, 1117, 1444, 1520, 1577
BssMI	GATC	3 cut(s)	29, 891, 1242
BssNAI	GTATAC	1 cut(s)	1449
Bst1107I	GTATAC	1 cut(s)	1449
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	6 cut(s)	14, 324, 827, 868, 1600, 1672
Bst6I	CTCTTC	3 cut(s)	311, 516, 1202
BstAUI	TGTACA	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	1581
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	7 cut(s)	45, 154, 530, 541, 1345, 1538, 1627
BstDEI	CTNAG	9 cut(s)	442, 671, 726, 920, 1168, 1403, 1408, 1532, 1658
BstEII	GGTNACC	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	909
BstHHI	GCGC	2 cut(s)	528, 1104
BstKTI	GATC	3 cut(s)	32, 894, 1245
BstMAI	GTCTC	1 cut(s)	1359
BstMBI	GATC	3 cut(s)	29, 891, 1242
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 405, 482, 491
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	2 cut(s)	945, 1297
BstPI	GGTNACC	1 cut(s)	1115
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	1185
BstV1I	GCAGC	4 cut(s)	583, 586, 796, 1034
BstX2I	RGATCY	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	1148
BstYI	RGATCY	1 cut(s)	891
BstZ17I	GTATAC	1 cut(s)	1449
BsuRI	GGCC	3 cut(s)	92, 1568, 1629
BtsCI	GGATG	1 cut(s)	909
BtsIMutI	CAGTG	5 cut(s)	19, 449, 1110, 1437, 1668
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	7 cut(s)	45, 154, 530, 541, 1345, 1538, 1627
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	2 cut(s)	528, 1104
Cfr13I	GGNCC	1 cut(s)	1566
Csp6I	GTAC	3 cut(s)	864, 1396, 1576
CviQI	GTAC	3 cut(s)	864, 1396, 1576
DdeI	CTNAG	9 cut(s)	442, 671, 726, 920, 1168, 1403, 1408, 1532, 1658
DpnI	GATC	3 cut(s)	31, 893, 1244
DpnII	GATC	3 cut(s)	29, 891, 1242
DraIII	CACNNNGTG	1 cut(s)	1661
Eam1104I	CTCTTC	3 cut(s)	311, 516, 1202
EarI	CTCTTC	3 cut(s)	311, 516, 1202
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	1407, 1423
Eco24I	GRGCYC	2 cut(s)	1409, 1425
Eco31I	GGTCTC	1 cut(s)	1359
Eco53kI	GAGCTC	2 cut(s)	1407, 1423
Eco91I	GGTNACC	1 cut(s)	1115
EcoICRI	GAGCTC	2 cut(s)	1407, 1423
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	1115
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	1409, 1425
FauI	CCCGC	1 cut(s)	1183
FblI	GTMKAC	2 cut(s)	1361, 1448
Fnu4HI	GCNGC	4 cut(s)	597, 600, 810, 1023
FokI	GGATG	1 cut(s)	916
FriOI	GRGCYC	2 cut(s)	1409, 1425
Fsp4HI	GCNGC	4 cut(s)	597, 600, 810, 1023
FspBI	CTAG	5 cut(s)	44, 540, 800, 1472, 1684
FspI	TGCGCA	1 cut(s)	1103
GlaI	GCGC	2 cut(s)	527, 1103
GluI	GCNGC	4 cut(s)	597, 600, 810, 1023
GsuI	CTGGAG	2 cut(s)	730, 1124
HaeIII	GGCC	3 cut(s)	92, 1568, 1629
HhaI	GCGC	2 cut(s)	528, 1104
Hin6I	GCGC	2 cut(s)	526, 1102
HinP1I	GCGC	2 cut(s)	526, 1102
HphI	GGTGA	3 cut(s)	398, 1109, 1220
Hpy166II	GTNNAC	6 cut(s)	1083, 1110, 1299, 1362, 1449, 1578
Hpy188I	TCNGA	6 cut(s)	271, 470, 729, 794, 1404, 1533
Hpy188III	TCNNGA	6 cut(s)	122, 734, 934, 1141, 1481, 1677
Hpy8I	GTNNAC	6 cut(s)	1083, 1110, 1299, 1362, 1449, 1578
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	6 cut(s)	14, 324, 827, 868, 1600, 1672
HpyCH4IV	ACGT	1 cut(s)	1580
HpyCH4V	TGCA	7 cut(s)	236, 370, 449, 839, 845, 958, 1289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 405, 482, 491
HpyF3I	CTNAG	9 cut(s)	442, 671, 726, 920, 1168, 1403, 1408, 1532, 1658
HpySE526I	ACGT	1 cut(s)	1580
HspAI	GCGC	2 cut(s)	526, 1102
Kzo9I	GATC	3 cut(s)	29, 891, 1242
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	3 cut(s)	473, 1342, 1637
Lsp1109I	GCAGC	4 cut(s)	583, 586, 796, 1034
LweI	GCATC	4 cut(s)	262, 826, 854, 897
MaeI	CTAG	5 cut(s)	44, 540, 800, 1472, 1684
MaeII	ACGT	1 cut(s)	1580
MaeIII	GTNAC	3 cut(s)	868, 1115, 1594
MalI	GATC	3 cut(s)	31, 893, 1244
MboI	GATC	3 cut(s)	29, 891, 1242
MboII	GAAGA	6 cut(s)	73, 298, 533, 901, 908, 1219
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	2 cut(s)	1409, 1425
MluCI	AATT	5 cut(s)	18, 648, 788, 1029, 1552
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	3 cut(s)	235, 997, 1615
MseI	TTAA	5 cut(s)	87, 564, 1011, 1428, 1542
MslI	CAYNNNNRTG	4 cut(s)	850, 902, 1122, 1304
MspR9I	CCNGG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	149, 405, 482, 491
NdeII	GATC	3 cut(s)	29, 891, 1242
NheI	GCTAGC	2 cut(s)	43, 539
NlaIV	GGNNCC	2 cut(s)	723, 982
NmuCI	GTSAC	1 cut(s)	1115
NsbI	TGCGCA	1 cut(s)	1103
NspI	RCATGY	2 cut(s)	945, 1297
NspV	TTCGAA	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	1304
PagI	TCATGA	1 cut(s)	933
PciI	ACATGT	1 cut(s)	1293
PciSI	GCTCTTC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	598, 601, 811, 1024
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
Ppu21I	YACGTR	1 cut(s)	1581
PscI	ACATGT	1 cut(s)	1293
Psp124BI	GAGCTC	2 cut(s)	1409, 1425
Psp6I	CCWGG	1 cut(s)	652
PspEI	GGTNACC	1 cut(s)	1115
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	723, 982
PspPI	GGNCC	1 cut(s)	1566
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	3 cut(s)	865, 1397, 1577
RsaNI	GTAC	3 cut(s)	864, 1396, 1576
RseI	CAYNNNNRTG	4 cut(s)	850, 902, 1122, 1304
SacI	GAGCTC	2 cut(s)	1409, 1425
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	5 cut(s)	87, 564, 1011, 1428, 1542
SatI	GCNGC	4 cut(s)	597, 600, 810, 1023
Sau3AI	GATC	3 cut(s)	29, 891, 1242
Sau96I	GGNCC	1 cut(s)	1566
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	2 cut(s)	1409, 1425
SfaNI	GCATC	4 cut(s)	262, 826, 854, 897
SfcI	CTRYAG	1 cut(s)	1185
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	4 cut(s)	850, 902, 1122, 1304
Sse9I	AATT	5 cut(s)	18, 648, 788, 1029, 1552
SsiI	CCGC	2 cut(s)	81, 1190
SspMI	CTAG	5 cut(s)	44, 540, 800, 1472, 1684
SstI	GAGCTC	2 cut(s)	1409, 1425
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	6 cut(s)	14, 324, 827, 868, 1600, 1672
TaiI	ACGT	1 cut(s)	1583
TaqI	TCGA	4 cut(s)	32, 646, 831, 1602
TasI	AATT	5 cut(s)	18, 648, 788, 1029, 1552
TatI	WGTACW	1 cut(s)	863
Tru1I	TTAA	5 cut(s)	87, 564, 1011, 1428, 1542
Tru9I	TTAA	5 cut(s)	87, 564, 1011, 1428, 1542
TscAI	CASTG	5 cut(s)	19, 456, 1117, 1444, 1675
TseFI	GTSAC	1 cut(s)	1115
TseI	GCWGC	4 cut(s)	596, 599, 809, 1022
Tsp45I	GTSAC	1 cut(s)	1115
TspGWI	ACGGA	1 cut(s)	958
TspRI	CASTG	5 cut(s)	19, 456, 1117, 1444, 1675
XagI	CCTNNNNNAGG	1 cut(s)	486
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	2 cut(s)	945, 1297
XmiI	GTMKAC	2 cut(s)	1361, 1448
XspI	CTAG	5 cut(s)	44, 540, 800, 1472, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.