RchiOBHm_Chr4g0428051

Protein NRT1 PTR FAMILY 4.5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004855
Physical Location & Seq
Reverse (-)
53147647 .. 53150580
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39696

Sequence Viewer

Length: 1809 bp
ATGGATATTAGTGTTATTGGATTGATCTCTCTCAAGGCCGGTTGCGTCGGCTTTTGCTGGGGTTTGGACAGTGAAATTGGAAATGGATCGAACAAAGAGCTAGCTTATGAATCTATGAAGAAACAAGAAAGAGAAGGCGGATTTAAGGCCAACTATTTCATCTTTGCAATGATGTTTCTGGATAACATAGGGTTTGTGGCTAACATGGCAAGCCTGGTTCTATACTTTATGCTTGTGATACACTTTGACATCTCTGGCTCTGCTACCACCACAACAAACTACTTGGGTTCTGCATTCTTGCTTACATTAGTTGGAGGATTCATCTCTGATGCCTACATGAATCGCCTCAACACCACTCTACTCTTTGGTGTGGCAGAACTGTTGGGATATTTGTTGTTGATTATTCAATCCCATTATACAAAACTGCAACCTTTACCATGTGGAGAATCAACCTGCGTTCATGGCACAAAAGCCTTGCTGTTTTATGCTTCAATATCCTTAGTTGCACTGGGAGGAGGTGGAATCAGAGGAGCGATTCCTGCTTTAGGTGCTGACCAGTTCAACTACAAGAAACCCGAAGAGCGCAAGCATATAGCTAGCTTTTTCAACTGGCTTTTGCTTAGTATAACCGTTGGGGCTGTGGTTGGAGTCACATTTGTGGTATACGTCAGCACAACGGTTGGATGGGACATAGCATTTATGATCTCCTTGTCTTGTGCTGGTGCTGGTCTTGTCATTGTTGCTTTGGGAAAGCCATATTATCGTGTTCGAGTTGCAGGAGAAAGTCCTTTACTAAGGGTTTTACAGGTTTTGGTGGCAAGTGTAAAGAACTGGAGGGTTCAGGTGCCTCAGAGTCCTGATGAACTACATGAATCCACTAAAAAGAGAGAGAGAATCACCCACACTGACCAATTCAGATTACTAGACAAGGCTGCTATTCTCCCTAACGGTGTCGATGCTGCAATTGCATCAAAATGGAAAGTTTGTACAGTAACACAGGTGGAGGAAGTGAAGATCCTCACAAGGATGATGCCTATTCTTCTAAGCACAACCCTCATGAACACTTGCTTGGCACAACTGCAAACTCTTTCCGTCCAACAAGGAACCCTCATGGACACACGCATTGGTAGTTTTAATGTTCCAGCAGCCACAATTCCAGTCATTCCTCTACTATTCATGTCTGTTCTTATCCCCACCTACGAGTTCACTTTCGTTCCCCTTTTGCGCAAGTTCACTGGTCACCCCAATGGTATAACCCACCTCCAGAGAGTTGGTGTTGGGCTTGTTCTGTCAGCCATCTCCATGACTATAGCGGGGTTCGTGGAAGTGAAGAGAAAGCATGAGTTCATTCAAAACAATCACAAGATCAGCCTCTTTTGGCTCTCATTTCACTATGCAATTTTCGGCATTGCAGACATGTTCACACTTGTGGGGTTGATGGAGTTCTTTTATAGAGAAGCTCCTGCTGGCATGAGGTCTCTGTCTACTTCATTTTCTTGGCTTTCTCTGTCAATTGGGTACTACCTGAGCTCAGCTTTTGTAGAGCTCATTAACTCTATCACTGGTAAGTATACAGACAGCAAGTTAGGGTGGCTAGAGGGGCTTGACATGAACAAGAACCACATAGAACTTTTCTACTGGTTTTTGGCGATTCTGAGCGTGCTTAACTTTGCAAATTATCTTTTCTGGGCCAACTGGTACACGTATAAGAACGATGTTACAGTCGATGAGGAAATGCTAATCAAAGCAGGCCAAGTTGGAGCTGATGAATCTAACTCACGAAGTGTAAGCACTGTGTCCAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

602

Amino Acids

66.66

Weight (kDa)

8.3

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 117 - 523 7.2e-80 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 844
AccI GTMKAC 3 cut(s) 663, 1484, 1571
AciI CCGC 2 cut(s) 138, 1313
AclWI GGATC 2 cut(s) 94, 1009
AdeI CACNNNGTG 1 cut(s) 1784
AfaI GTAC 3 cut(s) 988, 1520, 1700
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 2 cut(s) 1416, 1701
AgsI TTSAA 5 cut(s) 407, 492, 562, 607, 1352
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AleI CACNNNNGTG 2 cut(s) 656, 1427
AluBI AGCT 9 cut(s) 100, 104, 596, 600, 1460, 1530, 1535, 1546, 1763
AluI AGCT 9 cut(s) 100, 104, 596, 600, 1460, 1530, 1535, 1546, 1763
Alw21I GWGCWC 2 cut(s) 1532, 1548
Alw26I GTCTC 1 cut(s) 1482
AlwI GGATC 2 cut(s) 94, 1009
AoxI GGCC 4 cut(s) 36, 147, 1689, 1750
ApeKI GCWGC 3 cut(s) 932, 959, 1145
AspLEI GCGC 2 cut(s) 585, 1227
AspS9I GGNCC 1 cut(s) 1689
AsuHPI GGTGA 2 cut(s) 889, 1232
AsuNHI GCTAGC 2 cut(s) 100, 596
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 2 cut(s) 1532, 1548
Bbv12I GWGCWC 2 cut(s) 1532, 1548
BbvI GCAGC 3 cut(s) 919, 946, 1157
BccI CCATC 3 cut(s) 678, 1304, 1432
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 1482
BfaI CTAG 4 cut(s) 101, 597, 923, 1595
BfmI CTRYAG 1 cut(s) 1308
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 3 cut(s) 933, 960, 1146
BlpI GCTNAGC 1 cut(s) 1531
BlsI GCNGC 3 cut(s) 934, 961, 1147
Bme1390I CCNGG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 1689
BmiI GGNNCC 2 cut(s) 846, 1105
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 4 cut(s) 319, 946, 977, 1020
BmtI GCTAGC 2 cut(s) 104, 600
BmuI ACTGGG 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 853, 1247
Bpu10I CCTNAGC 1 cut(s) 1526
Bpu1102I GCTNAGC 1 cut(s) 1531
BpuEI CTTGAG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 1704
BsaI GGTCTC 1 cut(s) 1482
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 9 cut(s) 513, 556, 614, 836, 1157, 1240, 1567, 1643, 1700
Bse3DI GCAATG 2 cut(s) 174, 1407
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 689, 1032
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 2 cut(s) 174, 1407
BseMII CTCAG 4 cut(s) 863, 1517, 1545, 1646
BseNI ACTGG 9 cut(s) 513, 556, 614, 836, 1157, 1240, 1567, 1643, 1700
BseRI GAGGAG 2 cut(s) 528, 543
BseXI GCAGC 3 cut(s) 919, 946, 1157
BseYI CCCAGC 1 cut(s) 57
BshFI GGCC 4 cut(s) 38, 149, 1691, 1752
BshNI GGYRCC 1 cut(s) 844
BsiHKAI GWGCWC 2 cut(s) 1532, 1548
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 1482
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 4 cut(s) 38, 149, 1691, 1752
Bso31I GGTCTC 1 cut(s) 1482
Bsp1286I GDGCHC 2 cut(s) 1532, 1548
Bsp1407I TGTACA 1 cut(s) 986
Bsp143I GATC 5 cut(s) 24, 86, 702, 1014, 1365
Bsp1720I GCTNAGC 1 cut(s) 1531
BspACI CCGC 2 cut(s) 138, 1313
BspANI GGCC 4 cut(s) 38, 149, 1691, 1752
BspCNI CTCAG 4 cut(s) 862, 1518, 1544, 1647
BspHI TCATGA 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 846, 1105
BspMI ACCTGC 1 cut(s) 461
BspOI GCTAGC 2 cut(s) 104, 600
BspPI GGATC 2 cut(s) 94, 1009
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 844
BspTNI GGTCTC 1 cut(s) 1482
BsrDI GCAATG 2 cut(s) 174, 1407
BsrFI RCCGGY 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 986
BsrI ACTGG 9 cut(s) 513, 556, 614, 836, 1157, 1240, 1567, 1643, 1700
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 5 cut(s) 24, 86, 702, 1014, 1365
BssNAI GTATAC 2 cut(s) 664, 1572
Bst1107I GTATAC 2 cut(s) 664, 1572
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 8 cut(s) 71, 381, 631, 679, 950, 991, 1723, 1795
Bst6I CTCTTC 2 cut(s) 573, 1325
BstAUI TGTACA 1 cut(s) 986
BstBAI YACGTR 1 cut(s) 1704
BstC8I GCNNGC 7 cut(s) 102, 211, 587, 598, 1468, 1661, 1750
BstDEI CTNAG 8 cut(s) 499, 620, 794, 849, 1043, 1526, 1531, 1655
BstEII GGTNACC 1 cut(s) 1238
BstENI CCTNNNNNAGG 1 cut(s) 543
BstF5I GGATG 2 cut(s) 689, 1032
BstHHI GCGC 2 cut(s) 585, 1227
BstKTI GATC 5 cut(s) 27, 89, 705, 1017, 1368
BstMAI GTCTC 1 cut(s) 1482
BstMBI GATC 5 cut(s) 24, 86, 702, 1014, 1365
BstMWI GCNNNNNNNGC 6 cut(s) 206, 462, 539, 548, 965, 1600
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 1420
BstPI GGTNACC 1 cut(s) 1238
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 1308
BstV1I GCAGC 3 cut(s) 919, 946, 1157
BstX2I RGATCY 1 cut(s) 1014
BstXI CCANNNNNNTGG 1 cut(s) 1271
BstYI RGATCY 1 cut(s) 1014
BstZ17I GTATAC 2 cut(s) 664, 1572
BsuRI GGCC 4 cut(s) 38, 149, 1691, 1752
BtsCI GGATG 2 cut(s) 689, 1032
BtsIMutI CAGTG 6 cut(s) 76, 506, 903, 1233, 1560, 1791
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 7 cut(s) 102, 211, 587, 598, 1468, 1661, 1750
CciI TCATGA 1 cut(s) 1056
CfoI GCGC 2 cut(s) 585, 1227
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 1689
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 987, 1519, 1699
CviQI GTAC 3 cut(s) 987, 1519, 1699
DdeI CTNAG 8 cut(s) 499, 620, 794, 849, 1043, 1526, 1531, 1655
DpnI GATC 5 cut(s) 26, 88, 704, 1016, 1367
DpnII GATC 5 cut(s) 24, 86, 702, 1014, 1365
DraIII CACNNNGTG 1 cut(s) 1784
Eam1104I CTCTTC 2 cut(s) 573, 1325
EarI CTCTTC 2 cut(s) 573, 1325
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 2 cut(s) 1530, 1546
Eco24I GRGCYC 2 cut(s) 1532, 1548
Eco31I GGTCTC 1 cut(s) 1482
Eco53kI GAGCTC 2 cut(s) 1530, 1546
Eco91I GGTNACC 1 cut(s) 1238
EcoICRI GAGCTC 2 cut(s) 1530, 1546
EcoNI CCTNNNNNAGG 1 cut(s) 543
EcoO65I GGTNACC 1 cut(s) 1238
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 1532, 1548
FaqI GGGAC 1 cut(s) 701
FauI CCCGC 1 cut(s) 1306
FblI GTMKAC 3 cut(s) 663, 1484, 1571
Fnu4HI GCNGC 3 cut(s) 933, 960, 1146
FokI GGATG 2 cut(s) 696, 1039
FriOI GRGCYC 2 cut(s) 1532, 1548
Fsp4HI GCNGC 3 cut(s) 933, 960, 1146
FspBI CTAG 4 cut(s) 101, 597, 923, 1595
FspI TGCGCA 1 cut(s) 1226
GlaI GCGC 2 cut(s) 584, 1226
GluI GCNGC 3 cut(s) 933, 960, 1146
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 2 cut(s) 853, 1247
HaeIII GGCC 4 cut(s) 38, 149, 1691, 1752
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 585, 1227
Hin6I GCGC 2 cut(s) 583, 1225
HinP1I GCGC 2 cut(s) 583, 1225
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 889, 1232
Hpy166II GTNNAC 7 cut(s) 664, 1206, 1233, 1422, 1485, 1572, 1701
Hpy188I TCNGA 5 cut(s) 328, 527, 852, 917, 1656
Hpy188III TCNNGA 6 cut(s) 179, 857, 1057, 1264, 1779, 1800
Hpy8I GTNNAC 7 cut(s) 664, 1206, 1233, 1422, 1485, 1572, 1701
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 8 cut(s) 71, 381, 631, 679, 950, 991, 1723, 1795
HpyCH4IV ACGT 2 cut(s) 666, 1703
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 462, 539, 548, 965, 1600
HpyF3I CTNAG 8 cut(s) 499, 620, 794, 849, 1043, 1526, 1531, 1655
HpySE526I ACGT 2 cut(s) 666, 1703
HspAI GCGC 2 cut(s) 583, 1225
Kzo9I GATC 5 cut(s) 24, 86, 702, 1014, 1365
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 3 cut(s) 530, 1465, 1760
Lsp1109I GCAGC 3 cut(s) 919, 946, 1157
LweI GCATC 4 cut(s) 319, 946, 977, 1020
MaeI CTAG 4 cut(s) 101, 597, 923, 1595
MaeII ACGT 2 cut(s) 666, 1703
MaeIII GTNAC 4 cut(s) 649, 991, 1238, 1717
MalI GATC 5 cut(s) 26, 88, 704, 1016, 1367
MboI GATC 5 cut(s) 24, 86, 702, 1014, 1365
MboII GAAGA 5 cut(s) 130, 590, 1024, 1031, 1342
MfeI CAATTG 2 cut(s) 963, 1512
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 2 cut(s) 1532, 1548
MluCI AATT 7 cut(s) 75, 911, 963, 1152, 1398, 1512, 1675
MlyI GAGTC 2 cut(s) 657, 862
MmeI TCCRAC 5 cut(s) 292, 625, 661, 1120, 1738
MseI TTAA 4 cut(s) 144, 1134, 1551, 1665
MslI CAYNNNNRTG 6 cut(s) 656, 973, 1025, 1245, 1301, 1427
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 2 cut(s) 963, 1512
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 6 cut(s) 206, 462, 539, 548, 965, 1600
NdeII GATC 5 cut(s) 24, 86, 702, 1014, 1365
NheI GCTAGC 2 cut(s) 100, 596
NlaIV GGNNCC 2 cut(s) 846, 1105
NmuCI GTSAC 2 cut(s) 649, 1238
NsbI TGCGCA 1 cut(s) 1226
NspI RCATGY 1 cut(s) 1420
OliI CACNNNNGTG 2 cut(s) 656, 1427
PagI TCATGA 1 cut(s) 1056
PciI ACATGT 1 cut(s) 1416
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 934, 961, 1147
PleI GAGTC 2 cut(s) 656, 861
PpsI GAGTC 2 cut(s) 656, 861
Ppu21I YACGTR 1 cut(s) 1704
PscI ACATGT 1 cut(s) 1416
Psp124BI GAGCTC 2 cut(s) 1532, 1548
Psp6I CCWGG 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 1238
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 846, 1105
PspPI GGNCC 1 cut(s) 1689
PsuI RGATCY 1 cut(s) 1014
RsaI GTAC 3 cut(s) 988, 1520, 1700
RsaNI GTAC 3 cut(s) 987, 1519, 1699
RseI CAYNNNNRTG 6 cut(s) 656, 973, 1025, 1245, 1301, 1427
SacI GAGCTC 2 cut(s) 1532, 1548
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 4 cut(s) 144, 1134, 1551, 1665
SatI GCNGC 3 cut(s) 933, 960, 1146
Sau3AI GATC 5 cut(s) 24, 86, 702, 1014, 1365
Sau96I GGNCC 1 cut(s) 1689
SchI GAGTC 2 cut(s) 657, 862
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 1532, 1548
SfaNI GCATC 4 cut(s) 319, 946, 977, 1020
SfcI CTRYAG 1 cut(s) 1308
SmiMI CAYNNNNRTG 6 cut(s) 656, 973, 1025, 1245, 1301, 1427
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 7 cut(s) 75, 911, 963, 1152, 1398, 1512, 1675
SsiI CCGC 2 cut(s) 138, 1313
SspMI CTAG 4 cut(s) 101, 597, 923, 1595
SstI GAGCTC 2 cut(s) 1532, 1548
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 8 cut(s) 71, 381, 631, 679, 950, 991, 1723, 1795
TaiI ACGT 2 cut(s) 669, 1706
TaqI TCGA 4 cut(s) 89, 769, 954, 1725
TasI AATT 7 cut(s) 75, 911, 963, 1152, 1398, 1512, 1675
TatI WGTACW 1 cut(s) 986
Tru1I TTAA 4 cut(s) 144, 1134, 1551, 1665
Tru9I TTAA 4 cut(s) 144, 1134, 1551, 1665
TscAI CASTG 6 cut(s) 76, 513, 910, 1240, 1567, 1798
TseFI GTSAC 2 cut(s) 649, 1238
TseI GCWGC 3 cut(s) 932, 959, 1145
Tsp45I GTSAC 2 cut(s) 649, 1238
TspGWI ACGGA 1 cut(s) 1081
TspRI CASTG 6 cut(s) 76, 513, 910, 1240, 1567, 1798
XagI CCTNNNNNAGG 1 cut(s) 543
XceI RCATGY 1 cut(s) 1420
XmiI GTMKAC 3 cut(s) 663, 1484, 1571
XspI CTAG 4 cut(s) 101, 597, 923, 1595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.