pycom04g16360

Protein NRT1 PTR FAMILY 4.5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19033533 .. 19036253
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16360.2

Sequence Viewer

Length: 1476 bp
ATGATGACAATTCAAGCTTACTCAAAGCATTTGCACCCAAAAGAAACTTGCTTGACAAAGTGTGTCGAAGGCCGTATCGCTGTCATGCTCTATGCATCCCTGTGCTTGTTAGCTCTGGGAACAGGTGGCGTGAGGGGAGCACTGCCCGCACTTGGTGCTGATCAGTTTAACCGGAAAGAGGAAGCAAAATCACTCGCAACATTTTTCAACTGGCTTTTGCTTAGTACCACAGTTGGATCAATTATTGGCGTCACCGCCATTGTGACCATTAGCACTGAAGTAGCTTGGTACTGGGGTTTCTTTATATGCACGGCTGGAGCATTTTTCGGGTTCGCTGTTCTTGCGATGGGCAAACCTTTCTATCGCCTGCAAATCCCCGGCGACAGCCCCATCATTAGAATCATTCAGGTTATTGTAGTCGCTATAAAAAATAGAAGTTTACTGCAGCCGGGGAGCTCTCATGAATTGTATGAGATCAGTGAAAATGACCCAAAGTATACTAAAGAGAAAATTGCACATACTGATCAATTCAGTTGTCTAGACAAAGCTGCCATACTTGGCAAAGACTCCAAGCCCCAACCCTGGAAAGTTTGCACCGTTACACAAGTGGAAGAAGTGAAGGTCCTAACAAGAATGCTGCCAATTTTCTTCAGCACCATCATCATGAACACTTGTTTAGCACAGCTCCAAACATTTTCAGTCCAACAAGGAAGCATCATGGACCGCCACTTAGGCCGCATTGAGGTTCCGGCACCATCAATCCCCGTCATCCCTCTCCTCTTCATGTCCATCCTCATCCCGCTCTACGAGTTCTTCTTCATCCCCTTTGCGCGAAAAATCACAAAGCACCCGTCAGGCATCACGCAGCTTCAGCGCGTCGGCGTTGGACTAGTCCTCTGCGCAATCTCAATGGCAGTAGCTGGCATAGTAGAAATAAAGAGAAAGAACCAAGCCAACAAGGACTTCACAAAGCCGATATCTCTCTTCTGGCTTTCTTTCCAATACGCTATTTTCGGTATTGCTGACATGTTTACCCTGGTAGGGTTACTTGAATTCTTCTACAAGGAAGCTCCTGTGGGCATGAAATCGCTCTCCACCTCGTTCACTTTTCTGTCACTTTCTTTAGGGTACTTCTTGAGCTCGATTTTCGTTGACGTGATCAATGTTGTGACCAGTAGGATTACTCCGAGCAAACTAGGATGGCTGCATGGCAAGGACCTAAACAAAAACAATTTGCAGCTATTTTACTATTTCTTGGCAATCCTTAGCTGCATCAACTTTGTGAACTATGTCTACTGGGCTTCATGGTACAAGTACAAAGCAGACGAGGCAGATCCAAAGCTGCAGCTTAAAGCTTTGCACCAGACACCTGCCATTCACAATGATTCAAGTGTTGTTCAAGAAAGTGGAAGCAAGACTAATGAAGCTGCTGCCTCCACTGAGGAAAATACAGAAGAAAAGGTGGCAACTTTATGA

Protein Analysis

492

Amino Acids

54.69

Weight (kDa)

8.86

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1378
Acc16I TGCGCA 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 1378
AccB1I GGYRCC 1 cut(s) 751
AccBSI CCGCTC 1 cut(s) 802
AccI GTMKAC 2 cut(s) 497, 1293
AccII CGCG 2 cut(s) 832, 876
AciI CCGC 5 cut(s) 147, 255, 724, 736, 800
AclWI GGATC 2 cut(s) 244, 1328
AcsI RAATTY 1 cut(s) 1052
AcuI CTGAAG 3 cut(s) 297, 634, 854
AcyI GRCGYC 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 5 cut(s) 226, 290, 1130, 1310, 1316
AfiI CCNNNNNNNGG 5 cut(s) 152, 178, 582, 742, 1041
AflIII ACRYGT 1 cut(s) 1026
AgsI TTSAA 5 cut(s) 14, 208, 1052, 1389, 1400
AhlI ACTAGT 1 cut(s) 889
AjiI CACGTC 1 cut(s) 1156
AjnI CCWGG 2 cut(s) 581, 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
Alw21I GWGCWC 3 cut(s) 142, 458, 1142
AlwI GGATC 2 cut(s) 244, 1328
AlwNI CAGNNNCTG 1 cut(s) 920
AoxI GGCC 2 cut(s) 70, 733
ApoI RAATTY 1 cut(s) 1052
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
AspLEI GCGC 3 cut(s) 832, 876, 902
AspS9I GGNCC 3 cut(s) 622, 721, 1216
AsuC2I CCSGG 2 cut(s) 378, 450
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 3 cut(s) 622, 721, 1216
BaeI ACNNNNGTAYC 2 cut(s) 280, 313
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 2 cut(s) 458, 1142
Bbv12I GWGCWC 3 cut(s) 142, 458, 1142
BccI CCATC 6 cut(s) 340, 398, 665, 763, 797, 1194
BceAI ACGGC 2 cut(s) 57, 327
BciT130I CCWGG 2 cut(s) 583, 1037
BclI TGATCA 3 cut(s) 160, 523, 1158
BcnI CCSGG 2 cut(s) 378, 450
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 3 cut(s) 539, 890, 1196
BfmI CTRYAG 2 cut(s) 443, 1343
BfuAI ACCTGC 1 cut(s) 1378
BglI GCCNNNNNGGC 1 cut(s) 732
Bme1390I CCNGG 4 cut(s) 378, 450, 583, 1037
Bme18I GGWCC 3 cut(s) 622, 721, 1216
BmgBI CACGTC 1 cut(s) 1156
BmgT120I GGNCC 3 cut(s) 622, 721, 1216
BmiI GGNNCC 2 cut(s) 747, 753
BmrFI CCNGG 4 cut(s) 378, 450, 583, 1037
BmrI ACTGGG 2 cut(s) 301, 1306
BmsI GCATC 4 cut(s) 104, 723, 867, 1281
BmuI ACTGGG 2 cut(s) 301, 1306
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 1265
BpuEI CTTGAG 1 cut(s) 1156
BpuMI CCSGG 2 cut(s) 378, 450
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 376, 449, 581, 1035
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 178, 582, 742, 1041
Bse1I ACTGG 4 cut(s) 215, 296, 1173, 1301
BseBI CCWGG 2 cut(s) 583, 1037
BseDI CCNNGG 4 cut(s) 376, 449, 581, 1035
BseGI GGATG 6 cut(s) 95, 768, 789, 795, 819, 1205
BseLI CCNNNNNNNGG 5 cut(s) 152, 178, 582, 742, 1041
BseMII CTCAG 1 cut(s) 1431
BseNI ACTGG 4 cut(s) 215, 296, 1173, 1301
BseRI GAGGAG 1 cut(s) 767
Bsh1236I CGCG 2 cut(s) 832, 876
BshFI GGCC 2 cut(s) 72, 735
BshNI GGYRCC 1 cut(s) 751
BsiHKAI GWGCWC 3 cut(s) 142, 458, 1142
BsiSI CCGG 4 cut(s) 172, 378, 449, 749
BslI CCNNNNNNNGG 5 cut(s) 152, 178, 582, 742, 1041
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 2 cut(s) 72, 735
Bsp1286I GDGCHC 3 cut(s) 142, 458, 1142
Bsp143I GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
BspACI CCGC 5 cut(s) 147, 255, 724, 736, 800
BspANI GGCC 2 cut(s) 72, 735
BspCNI CTCAG 1 cut(s) 1432
BspFNI CGCG 2 cut(s) 832, 876
BspHI TCATGA 2 cut(s) 460, 663
BspLI GGNNCC 2 cut(s) 747, 753
BspMAI CTGCAG 2 cut(s) 447, 1347
BspMI ACCTGC 1 cut(s) 1378
BspPI GGATC 2 cut(s) 244, 1328
BspT107I GGYRCC 1 cut(s) 751
BsrBI CCGCTC 1 cut(s) 802
BsrI ACTGG 4 cut(s) 215, 296, 1173, 1301
BssECI CCNNGG 4 cut(s) 376, 449, 581, 1035
BssMI GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
BssNAI GTATAC 1 cut(s) 498
BssNI GRCGYC 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 583, 1037
Bst4CI ACNGT 2 cut(s) 232, 598
Bst6I CTCTTC 2 cut(s) 785, 989
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 147, 368, 922
BstDEI CTNAG 4 cut(s) 221, 730, 1265, 1440
BstF5I GGATG 6 cut(s) 95, 768, 789, 795, 819, 1205
BstFNI CGCG 2 cut(s) 832, 876
BstHHI GCGC 3 cut(s) 832, 876, 902
BstKTI GATC 6 cut(s) 163, 239, 477, 526, 1161, 1336
BstMBI GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
BstMWI GCNNNNNNNGC 6 cut(s) 146, 155, 341, 732, 871, 1328
BstNI CCWGG 2 cut(s) 583, 1037
BstNSI RCATGY 1 cut(s) 1030
BstSCI CCNGG 4 cut(s) 376, 448, 581, 1035
BstSFI CTRYAG 2 cut(s) 443, 1343
BstUI CGCG 2 cut(s) 832, 876
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
BstZ17I GTATAC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 72, 735
BtgZI GCGATG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 1156
BtsCI GGATG 6 cut(s) 95, 768, 789, 795, 819, 1205
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 4 cut(s) 140, 273, 484, 1437
BveI ACCTGC 1 cut(s) 1378
Cac8I GCNNGC 3 cut(s) 147, 368, 922
CaiI CAGNNNCTG 1 cut(s) 920
CciI TCATGA 2 cut(s) 460, 663
CfoI GCGC 3 cut(s) 832, 876, 902
Cfr13I GGNCC 3 cut(s) 622, 721, 1216
CseI GACGC 2 cut(s) 238, 865
Csp6I GTAC 5 cut(s) 225, 289, 1129, 1309, 1315
CviAII CATG 9 cut(s) 85, 461, 664, 718, 784, 1027, 1081, 1208, 1305
CviQI GTAC 5 cut(s) 225, 289, 1129, 1309, 1315
DdeI CTNAG 4 cut(s) 221, 730, 1265, 1440
DpnI GATC 6 cut(s) 162, 238, 476, 525, 1160, 1335
DpnII GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
DraIII CACNNNGTG 1 cut(s) 155
Eam1104I CTCTTC 2 cut(s) 785, 989
EarI CTCTTC 2 cut(s) 785, 989
Ecl136II GAGCTC 2 cut(s) 456, 1140
Eco24I GRGCYC 2 cut(s) 458, 1142
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 3 cut(s) 622, 721, 1216
Eco53kI GAGCTC 2 cut(s) 456, 1140
Eco57I CTGAAG 3 cut(s) 297, 634, 854
EcoICRI GAGCTC 2 cut(s) 456, 1140
EcoO109I RGGNCCY 2 cut(s) 622, 1216
EcoRI GAATTC 1 cut(s) 1052
EcoRII CCWGG 2 cut(s) 581, 1035
EcoRV GATATC 1 cut(s) 978
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 2 cut(s) 458, 1142
FaeI CATG 9 cut(s) 88, 464, 667, 721, 787, 1030, 1084, 1211, 1308
FatI CATG 9 cut(s) 84, 460, 663, 717, 783, 1026, 1080, 1207, 1304
FauI CCCGC 2 cut(s) 154, 807
FbaI TGATCA 3 cut(s) 160, 523, 1158
FblI GTMKAC 2 cut(s) 497, 1293
FokI GGATG 6 cut(s) 82, 755, 776, 782, 806, 1212
FriOI GRGCYC 2 cut(s) 458, 1142
FspBI CTAG 3 cut(s) 539, 890, 1196
FspI TGCGCA 1 cut(s) 901
GlaI GCGC 3 cut(s) 831, 875, 901
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 72, 735
HapII CCGG 4 cut(s) 172, 378, 449, 749
HgaI GACGC 2 cut(s) 238, 865
HhaI GCGC 3 cut(s) 832, 876, 902
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 9 cut(s) 88, 464, 667, 721, 787, 1030, 1084, 1211, 1308
Hin6I GCGC 3 cut(s) 830, 874, 900
HinP1I GCGC 3 cut(s) 830, 874, 900
HincII GTYRAC 1 cut(s) 1153
HindII GTYRAC 1 cut(s) 1153
HindIII AAGCTT 2 cut(s) 15, 1353
HinfI GANTC 3 cut(s) 399, 566, 1385
HpaII CCGG 4 cut(s) 172, 378, 449, 749
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 7 cut(s) 440, 498, 1032, 1104, 1153, 1285, 1294
Hpy188I TCNGA 1 cut(s) 1188
Hpy188III TCNNGA 5 cut(s) 461, 539, 664, 1135, 1400
Hpy8I GTNNAC 7 cut(s) 440, 498, 1032, 1104, 1153, 1285, 1294
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 2 cut(s) 62, 613
HpyCH4III ACNGT 2 cut(s) 232, 598
HpyCH4IV ACGT 1 cut(s) 1155
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 155, 341, 732, 871, 1328
HpyF3I CTNAG 4 cut(s) 221, 730, 1265, 1440
HpySE526I ACGT 1 cut(s) 1155
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 9 cut(s) 88, 464, 667, 721, 787, 1030, 1084, 1211, 1308
HspAI GCGC 3 cut(s) 830, 874, 900
Ksp22I TGATCA 3 cut(s) 160, 523, 1158
Kzo9I GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
LmnI GCTCC 5 cut(s) 137, 317, 453, 690, 1075
LweI GCATC 4 cut(s) 104, 723, 867, 1281
MaeI CTAG 3 cut(s) 539, 890, 1196
MaeII ACGT 1 cut(s) 1155
MaeIII GTNAC 6 cut(s) 250, 262, 598, 1044, 1113, 1168
MalI GATC 6 cut(s) 162, 238, 476, 525, 1160, 1335
MbiI CCGCTC 1 cut(s) 802
MboI GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
MboII GAAGA 8 cut(s) 623, 640, 772, 805, 808, 976, 1048, 1466
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 3 cut(s) 142, 458, 1142
MluCI AATT 8 cut(s) 9, 240, 464, 510, 527, 642, 1052, 1231
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 3 cut(s) 214, 727, 865
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 2 cut(s) 168, 1350
MslI CAYNNNNRTG 2 cut(s) 100, 662
MspI CCGG 4 cut(s) 172, 378, 449, 749
MspR9I CCNGG 4 cut(s) 378, 450, 583, 1037
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 2 cut(s) 583, 1037
MvnI CGCG 2 cut(s) 832, 876
MwoI GCNNNNNNNGC 6 cut(s) 146, 155, 341, 732, 871, 1328
NciI CCSGG 2 cut(s) 378, 450
NdeII GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
NlaIII CATG 9 cut(s) 88, 464, 667, 721, 787, 1030, 1084, 1211, 1308
NlaIV GGNNCC 2 cut(s) 747, 753
NmuCI GTSAC 4 cut(s) 250, 262, 1113, 1168
NsbI TGCGCA 1 cut(s) 901
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 1030
PagI TCATGA 2 cut(s) 460, 663
PaqCI CACCTGC 1 cut(s) 1378
PciI ACATGT 1 cut(s) 1026
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 2 cut(s) 399, 1385
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PpuMI RGGWCCY 2 cut(s) 622, 1216
PscI ACATGT 1 cut(s) 1026
Psp124BI GAGCTC 2 cut(s) 458, 1142
Psp5II RGGWCCY 2 cut(s) 622, 1216
Psp6I CCWGG 2 cut(s) 581, 1035
PspGI CCWGG 2 cut(s) 581, 1035
PspN4I GGNNCC 2 cut(s) 747, 753
PspPI GGNCC 3 cut(s) 622, 721, 1216
PspPPI RGGWCCY 2 cut(s) 622, 1216
PsrI GAACNNNNNNTAC 2 cut(s) 1277, 1309
PstI CTGCAG 2 cut(s) 447, 1347
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 1333
RsaI GTAC 5 cut(s) 226, 290, 1130, 1310, 1316
RsaNI GTAC 5 cut(s) 225, 289, 1129, 1309, 1315
RseI CAYNNNNRTG 2 cut(s) 100, 662
SacI GAGCTC 2 cut(s) 458, 1142
SaqAI TTAA 2 cut(s) 168, 1350
Sau3AI GATC 6 cut(s) 160, 236, 474, 523, 1158, 1333
Sau96I GGNCC 3 cut(s) 622, 721, 1216
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 4 cut(s) 378, 450, 583, 1037
SduI GDGCHC 3 cut(s) 142, 458, 1142
SfaNI GCATC 4 cut(s) 104, 723, 867, 1281
SfcI CTRYAG 2 cut(s) 443, 1343
SinI GGWCC 3 cut(s) 622, 721, 1216
SmiMI CAYNNNNRTG 2 cut(s) 100, 662
SmlI CTYRAG 1 cut(s) 1135
SmoI CTYRAG 1 cut(s) 1135
SpeI ACTAGT 1 cut(s) 889
Sse9I AATT 8 cut(s) 9, 240, 464, 510, 527, 642, 1052, 1231
SsiI CCGC 5 cut(s) 147, 255, 724, 736, 800
SspMI CTAG 3 cut(s) 539, 890, 1196
SstI GAGCTC 2 cut(s) 458, 1142
StyD4I CCNGG 4 cut(s) 376, 448, 581, 1035
TaaI ACNGT 2 cut(s) 232, 598
TaiI ACGT 1 cut(s) 1158
TaqI TCGA 2 cut(s) 66, 1142
TasI AATT 8 cut(s) 9, 240, 464, 510, 527, 642, 1052, 1231
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 2 cut(s) 399, 1385
Tru1I TTAA 2 cut(s) 168, 1350
Tru9I TTAA 2 cut(s) 168, 1350
TscAI CASTG 4 cut(s) 147, 280, 484, 1444
TseFI GTSAC 4 cut(s) 250, 262, 1113, 1168
Tsp45I GTSAC 4 cut(s) 250, 262, 1113, 1168
TspDTI ATGAA 7 cut(s) 477, 680, 772, 808, 1097, 1293, 1437
TspRI CASTG 4 cut(s) 147, 280, 484, 1444
VpaK11BI GGWCC 3 cut(s) 622, 721, 1216
XapI RAATTY 1 cut(s) 1052
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 1030
XmiI GTMKAC 2 cut(s) 497, 1293
XspI CTAG 3 cut(s) 539, 890, 1196
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.