Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004855

Physical Location & Seq

Genomic Coordinates Forward (+)

27873665 .. 27875777

Gene Structure 2113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1197600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGATCAACTTACCTCCTCGCCCTAGTTGGAAGCTTCATTTCGGACATATACTTGGGCAGATTCACAACATGCCTGATTTTTGGCAAAATTGATATACTGCATGAATATGTAGCTTGGTACTGGGGTTTCTTGATAGCAACTGTTGCATCCTTTATCGGGTTCACTGTTCTCGCGATGGGTAATCCGTTCTATCGTCTCCAAGTCCCCGGCGACAGCCCCATTATAAGGATCGTTCAGTTGTCTAGACAAAGCTGCCAACTCGGCAAAGACTCCAAGCCCCAACCATGGAAAGTTTGCACAGTAACACAAGTAGAAGAAGTGAAGGTCCTAACAAGAATGTTGCCAATTCTCTTCAGCACCATCATAATGAACAGTTGTTTGGCACAACTCCAAACATTCTCAGTCCAACAAGGAAGCATCATGGACCTCCACTTAGGCTCCTTCGAGGTTCCGGCTCCATTTATTCCCGTCATCCCTCTCCTCTTCATGTCCATCCTCATCCTGCTGTACGAGTTCTTCTTCGTGCCTTTTGCGCGAAATATCACAAAGCACCCATCGGGCATAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

191

Amino Acids

21.36

Weight (kDa)

8.38

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	10 - 82	3.5e-06	POT family
PTR2	PF00854	96 - 187	4.4e-15	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21811 FvH4_4g21812 FvH4_6g08650 FvH4_6g08650
malus_domestica	MD04G1184500.v1.1 MD12G1197600.v1.1 MD12G1197700.v1.1 MD13G1136700.v1.1 MD16G1132000.v1.1
prunus_persica	Prupe.1G208700_v2.0.a1 Prupe.6G303000_v2.0.a1
pyrus_communis	pycom04g16360
rosa_chinensis	RchiOBHm_Chr3g0458781 RchiOBHm_Chr4g0428051
rosa_laevigata	RLG00000007186 RLG00000025135
rosa_multiflora	Rmu_co8474865.1_g000001 Rmu_sc0001634.1_g000029
rosa_roxburghii	Rroxscaffold_5G00369770 Rroxscaffold_6G00420790
rosa_rugosa	Rorug03G0031800
rosa_samantha	Rh3AG089500 Rh3BG092400 Rh3CG092700 Rh3DG093400 Rh4AG279100 Rh4BG284500 Rh4CG300200 Rh4DG281600
rosa_wichuraiana	Rw3G007660 Rw4G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccII	CGCG	2 cut(s)	176, 538
AclWI	GGATC	2 cut(s)	13, 239
AcuI	CTGAAG	1 cut(s)	340
AfaI	GTAC	2 cut(s)	122, 512
AfiI	CCNNNNNNNGG	3 cut(s)	159, 228, 288
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	36, 116, 255
AluI	AGCT	3 cut(s)	36, 116, 255
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	13, 239
ApeKI	GCWGC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	328, 427
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	328, 427
BaeI	ACNNNNGTAYC	2 cut(s)	112, 145
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	4 cut(s)	172, 371, 503, 565
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	26, 246
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	328, 427
BmgT120I	GGNCC	2 cut(s)	328, 427
BmiI	GGNNCC	3 cut(s)	442, 453, 459
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	158, 429
BmuI	ACTGGG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	208, 287
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 228, 288
Bse1I	ACTGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	208, 287
BseGI	GGATG	4 cut(s)	149, 474, 495, 501
BseLI	CCNNNNNNNGG	3 cut(s)	159, 228, 288
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	8, 473
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	176, 538
BsiSI	CCGG	2 cut(s)	210, 455
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	159, 228, 288
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	5, 231
Bsp19I	CCATGG	1 cut(s)	287
Bsp68I	TCGCGA	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	2 cut(s)	176, 538
BspLI	GGNNCC	3 cut(s)	442, 453, 459
BspPI	GGATC	2 cut(s)	13, 239
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	208, 287
BssMI	GATC	2 cut(s)	5, 231
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	145, 169, 304, 377
Bst6I	CTCTTC	2 cut(s)	359, 491
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	403, 436
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	149, 474, 495, 501
BstFNI	CGCG	2 cut(s)	176, 538
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	2 cut(s)	8, 234
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	5, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 264, 535
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	2 cut(s)	176, 538
BstV1I	GCAGC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	149, 474, 495, 501
BtsIMutI	CAGTG	1 cut(s)	165
BtuMI	TCGCGA	1 cut(s)	176
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	328, 427
Csp6I	GTAC	2 cut(s)	121, 511
CviAII	CATG	5 cut(s)	72, 104, 288, 424, 490
CviJI	RGCY	7 cut(s)	36, 116, 219, 255, 280, 441, 458
CviKI_1	RGCY	7 cut(s)	36, 116, 219, 255, 280, 441, 458
CviQI	GTAC	2 cut(s)	121, 511
DdeI	CTNAG	2 cut(s)	403, 436
DpnI	GATC	2 cut(s)	7, 233
DpnII	GATC	2 cut(s)	5, 231
Eam1104I	CTCTTC	2 cut(s)	359, 491
EarI	CTCTTC	2 cut(s)	359, 491
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	328, 427
Eco57I	CTGAAG	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	5 cut(s)	75, 107, 291, 427, 493
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	5 cut(s)	71, 103, 287, 423, 489
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	4 cut(s)	136, 461, 482, 488
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	2 cut(s)	26, 246
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	256
HapII	CCGG	2 cut(s)	210, 455
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	5 cut(s)	75, 107, 291, 427, 493
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	63, 272
HpaII	CCGG	2 cut(s)	210, 455
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	133, 175, 246
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	319, 454
HpyCH4III	ACNGT	4 cut(s)	145, 169, 304, 377
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	103, 149, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 264, 535
HpyF3I	CTNAG	2 cut(s)	403, 436
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	5 cut(s)	75, 107, 291, 427, 493
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	5, 231
LmnI	GCTCC	2 cut(s)	446, 463
LpnPI	CCDG	5 cut(s)	89, 109, 223, 468, 518
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	158, 429
MaeI	CTAG	2 cut(s)	26, 246
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	7, 233
MboI	GATC	2 cut(s)	5, 231
MboII	GAAGA	5 cut(s)	329, 346, 478, 511, 514
MluCI	AATT	2 cut(s)	90, 348
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	10, 433
MnlI	CCTC	7 cut(s)	26, 29, 440, 442, 489, 494, 509
MslI	CAYNNNNRTG	2 cut(s)	108, 368
MspI	CCGG	2 cut(s)	210, 455
MspR9I	CCNGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	176, 538
MwoI	GCNNNNNNNGC	3 cut(s)	146, 264, 535
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	5, 231
NlaIII	CATG	5 cut(s)	75, 107, 291, 427, 493
NlaIV	GGNNCC	3 cut(s)	442, 453, 459
NmeAIII	GCCGAG	1 cut(s)	243
NruI	TCGCGA	1 cut(s)	176
NspI	RCATGY	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	442, 453, 459
PspPI	GGNCC	2 cut(s)	328, 427
PspPPI	RGGWCCY	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	2 cut(s)	122, 512
RsaNI	GTAC	2 cut(s)	121, 511
RseI	CAYNNNNRTG	2 cut(s)	108, 368
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	5, 231
Sau96I	GGNCC	2 cut(s)	328, 427
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	8 cut(s)	18, 38, 118, 257, 330, 432, 453, 572
SfaNI	GCATC	2 cut(s)	158, 429
SinI	GGWCC	2 cut(s)	328, 427
SmiMI	CAYNNNNRTG	2 cut(s)	108, 368
Sse9I	AATT	2 cut(s)	90, 348
SspMI	CTAG	2 cut(s)	26, 246
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	4 cut(s)	145, 169, 304, 377
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	1 cut(s)	447
TasI	AATT	2 cut(s)	90, 348
TfiI	GAWTC	1 cut(s)	63
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	28, 120, 386, 478
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	328, 427
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	26, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.