FvH4_4g21812

Protein NRT1 PTR FAMILY 4.5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004855
Physical Location & Seq
Reverse (-)
24808102 .. 24809416
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21812.t1

Sequence Viewer

Length: 900 bp
ATGGGGCTGGACAGTGAAATTGGAAATGGATCGAACAAAGAGCTAGCGTATGAATCTATGAAGAAACAAGAAAGGCAAGGAGGATTTAAGGCCAACTATTTCATCTTTGCAATGATGTTTCTGGATAACATAGGGTTTGTGGCTAACATGGTAAACCTGGTTCTGTACTTCATGTTTGTGATACACTTTGACATCTCTGGCTCTGCTACCACCACAACAAATTACTTGGGTACCGCATTCTTGCTTACAATAGTTGGAGGATTCATCTCGGATGCCTACATGAATCGACTCAACACAACTCTACTCTTTGGTGTGACAGAACTGCTGGGATATATGTTGTTGATTATTCAGTCCCATTATAAAAAACTGCAACCTTTACCATGTGAAGAATCAATCTGTGTTCATGGCACAAAAGCCTTGCTGTTTTATGCTTCAATATCCTTAATTGGACTAGGAGGTGGTGGAATTAGAGGAGCGATTCCTGCTTTAGGTGCTGATCAGTTCAACTACAAGAAACCTGAGGAGCGCAAGCATATAGCCAGCTTCTTTAACTGGCTATTGCTTAGTATAACCGTTGGCGCTGTGGTTGGAGTCACATTTGTGGTGTATGTCAGCACTAGGGTTGGATGGGACATAGGATTTATAATTTCCTTATCTTGTGCTGCTGCTGGTCTTTTCATTGTTGCTTTAGGAAAACCATATTATCGTGTTCGAGTTGCAGGAGAAAGTCCTTTGCTAAGGGTTTTACAGGTTTTGGTGGCCAGTGTAAAGAACTGGAAGGTGGATATGCCTCAAAGTTCTGATGAACTACATGAATCCACTAAAAAGAGAGAGCGAATCCCCCACACCGACCAATTCAGGCAAGTTTCTCTTAATGTTCTGCTAAAATATTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

300

Amino Acids

33.16

Weight (kDa)

8.98

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 98 - 289 1.3e-29 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 360, 644
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 759
AfaI GTAC 2 cut(s) 167, 232
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 2 cut(s) 435, 505
AjnI CCWGG 1 cut(s) 156
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 2 cut(s) 43, 543
AluI AGCT 2 cut(s) 43, 543
AlwI GGATC 1 cut(s) 37
AoxI GGCC 2 cut(s) 90, 759
ApeKI GCWGC 2 cut(s) 662, 665
Asp718I GGTACC 1 cut(s) 230
AspLEI GCGC 2 cut(s) 528, 581
AsuNHI GCTAGC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 519
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 649, 652
BccI CCATC 1 cut(s) 621
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 496
BfaI CTAG 3 cut(s) 44, 452, 618
BfoI RGCGCY 1 cut(s) 582
BisI GCNGC 2 cut(s) 663, 666
BlsI GCNGC 2 cut(s) 664, 667
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 262
BmtI GCTAGC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 737
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 3 cut(s) 557, 762, 779
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 277, 632
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 3 cut(s) 557, 762, 779
BseRI GAGGAG 2 cut(s) 486, 536
BseXI GCAGC 2 cut(s) 649, 652
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 92, 761
BshNI GGYRCC 1 cut(s) 230
BslFI GGGAC 2 cut(s) 337, 644
BslI CCNNNNNNNGG 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 337, 644
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 2 cut(s) 92, 761
Bsp143I GATC 2 cut(s) 29, 496
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 92, 761
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 3 cut(s) 557, 762, 779
BssMI GATC 2 cut(s) 29, 496
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 14, 574
BstC8I GCNNGC 3 cut(s) 45, 530, 541
BstDEI CTNAG 3 cut(s) 519, 563, 737
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 277, 632
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 528, 581
BstKTI GATC 2 cut(s) 32, 499
BstMBI GATC 2 cut(s) 29, 496
BstMWI GCNNNNNNNGC 2 cut(s) 482, 491
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 649, 652
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 2 cut(s) 92, 761
BtsCI GGATG 2 cut(s) 277, 632
BtsIMutI CAGTG 2 cut(s) 19, 769
Cac8I GCNNGC 3 cut(s) 45, 530, 541
CfoI GCGC 2 cut(s) 528, 581
CsiI ACCWGGT 1 cut(s) 156
Csp6I GTAC 2 cut(s) 166, 231
CviAII CATG 6 cut(s) 148, 172, 280, 381, 404, 812
CviQI GTAC 2 cut(s) 166, 231
DdeI CTNAG 3 cut(s) 519, 563, 737
DpnI GATC 2 cut(s) 31, 498
DpnII GATC 2 cut(s) 29, 496
EaeI YGGCCR 1 cut(s) 759
Eco81I CCTNAGG 1 cut(s) 519
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 6 cut(s) 151, 175, 283, 384, 407, 815
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 2 cut(s) 337, 644
FatI CATG 6 cut(s) 147, 171, 279, 380, 403, 811
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 2 cut(s) 663, 666
FokI GGATG 2 cut(s) 284, 639
Fsp4HI GCNGC 2 cut(s) 663, 666
FspBI CTAG 3 cut(s) 44, 452, 618
GlaI GCGC 2 cut(s) 527, 580
GluI GCNGC 2 cut(s) 663, 666
GsaI CCCAGC 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 2 cut(s) 92, 761
HhaI GCGC 2 cut(s) 528, 581
Hin1II CATG 6 cut(s) 151, 175, 283, 384, 407, 815
Hin6I GCGC 2 cut(s) 526, 579
HinP1I GCGC 2 cut(s) 526, 579
HinfI GANTC 9 cut(s) 53, 261, 283, 288, 389, 478, 591, 815, 837
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 271, 802
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 772
HpyCH4III ACNGT 2 cut(s) 14, 574
HpyCH4V TGCA 4 cut(s) 110, 370, 719, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 491
HpyF3I CTNAG 3 cut(s) 519, 563, 737
Hsp92II CATG 6 cut(s) 151, 175, 283, 384, 407, 815
HspAI GCGC 2 cut(s) 526, 579
KpnI GGTACC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 29, 496
LmnI GCTCC 2 cut(s) 473, 523
Lsp1109I GCAGC 2 cut(s) 649, 652
LweI GCATC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 156
MaeI CTAG 3 cut(s) 44, 452, 618
MaeIII GTNAC 2 cut(s) 313, 592
MalI GATC 2 cut(s) 31, 498
MboI GATC 2 cut(s) 29, 496
MboII GAAGA 2 cut(s) 73, 398
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 6 cut(s) 18, 220, 444, 465, 645, 854
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 2 cut(s) 282, 600
MmeI TCCRAC 3 cut(s) 235, 568, 604
MnlI CCTC 6 cut(s) 74, 251, 449, 464, 514, 801
Mox20I TGGCCA 1 cut(s) 761
MscI TGGCCA 1 cut(s) 761
MseI TTAA 4 cut(s) 87, 443, 549, 873
MslI CAYNNNNRTG 2 cut(s) 176, 599
Msp20I TGGCCA 1 cut(s) 761
MspR9I CCNGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 482, 491
NdeII GATC 2 cut(s) 29, 496
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 151, 175, 283, 384, 407, 815
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 313, 592
OliI CACNNNNGTG 1 cut(s) 599
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 7 cut(s) 53, 261, 283, 389, 478, 815, 837
PkrI GCNGC 2 cut(s) 664, 667
PleI GAGTC 2 cut(s) 282, 599
PpsI GAGTC 2 cut(s) 282, 599
PsiI TTATAA 2 cut(s) 360, 644
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
RsaI GTAC 2 cut(s) 167, 232
RsaNI GTAC 2 cut(s) 166, 231
RseI CAYNNNNRTG 2 cut(s) 176, 599
SaqAI TTAA 4 cut(s) 87, 443, 549, 873
SatI GCNGC 2 cut(s) 663, 666
Sau3AI GATC 2 cut(s) 29, 496
SchI GAGTC 2 cut(s) 282, 600
ScrFI CCNGG 1 cut(s) 158
SetI ASST 9 cut(s) 45, 159, 376, 460, 493, 520, 545, 753, 783
SexAI ACCWGGT 1 cut(s) 156
SfaNI GCATC 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 176, 599
Sse9I AATT 6 cut(s) 18, 220, 444, 465, 645, 854
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 890
SspMI CTAG 3 cut(s) 44, 452, 618
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 14, 574
TaqI TCGA 3 cut(s) 32, 286, 712
TasI AATT 6 cut(s) 18, 220, 444, 465, 645, 854
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 7 cut(s) 53, 261, 283, 389, 478, 815, 837
Tru1I TTAA 4 cut(s) 87, 443, 549, 873
Tru9I TTAA 4 cut(s) 87, 443, 549, 873
TscAI CASTG 2 cut(s) 19, 769
TseFI GTSAC 2 cut(s) 313, 592
TseI GCWGC 2 cut(s) 662, 665
Tsp45I GTSAC 2 cut(s) 313, 592
TspRI CASTG 2 cut(s) 19, 769
XagI CCTNNNNNAGG 1 cut(s) 486
XspI CTAG 3 cut(s) 44, 452, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.