Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474865.1

Orthogroup ID

OG0004855

Physical Location & Seq

Genomic Coordinates Reverse (-)

326 .. 2001

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggcatcttcgccagtgaagccaaagaagcatctacattttatattgcttatgccgtttgtcaccgcccagaatctcacacccaaaaacaaacgcaaagcaagactgctcacttttaggagagcctttggggacttctctccaactatccctcccttgttactgcctttcatgttacttggggggttggacagtgaaattggaaatggatcgaacaaagagctagcttatgaatctatgaagaaacaagaaagagaaggcggatttaaggccaactatttcatctttgcaatgatgtttctggataacatagggtttgtggctaacatggcaagcctggttctatactttatgcttgtgatacactttgacatctctggctctgctaccaccacaacaaactacttgggttctgcattcttgcttacattagttggaggattcatctctgatgcctacatgaatcgcctcaacaccactctactcttcggtgtggcagaactgttgggatattcattgttgattattcaatcccattatacaaaactgcaacctttaccatgtggagaatcaacctgcgttcatggcacaaaagccttgctgttttatgcttcaatatccttagttgcactgggaggaggtggaatcagaggagcgattcctgctttaggtgctgaccagttcaactacaagaaacccgaagagcgcaagcatatagctagctttttcaactggcttttgcttagtataaccgttggggctgtggttggagtcacatttgtggtatatgtcagcacaacggttggatgggacatagcatttatcatctccttgtcttgtgctggtgctggtcttgtcattgttgctttgggaaagccatattatcgtgttcgagttgcaggagaaagtcctttactaagggttttacaggtctttgatctctccctcctctctctgacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

320

Amino Acids

34.9

Weight (kDa)

9.42

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21811 FvH4_4g21812 FvH4_6g08650 FvH4_6g08650
malus_domestica	MD04G1184500.v1.1 MD12G1197600.v1.1 MD12G1197700.v1.1 MD13G1136700.v1.1 MD16G1132000.v1.1
prunus_persica	Prupe.1G208700_v2.0.a1 Prupe.6G303000_v2.0.a1
pyrus_communis	pycom04g16360
rosa_chinensis	RchiOBHm_Chr3g0458781 RchiOBHm_Chr4g0428051
rosa_laevigata	RLG00000007186 RLG00000025135
rosa_multiflora	Rmu_co8474865.1_g000001 Rmu_sc0001634.1_g000029
rosa_roxburghii	Rroxscaffold_5G00369770 Rroxscaffold_6G00420790
rosa_rugosa	Rorug03G0031800
rosa_samantha	Rh3AG089500 Rh3BG092400 Rh3CG092700 Rh3DG093400 Rh4AG279100 Rh4BG284500 Rh4CG300200 Rh4DG281600
rosa_wichuraiana	Rw3G007660 Rw4G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AciI	CCGC	2 cut(s)	66, 261
AclWI	GGATC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	530, 615, 685, 730
AjnI	CCWGG	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	779
AluBI	AGCT	4 cut(s)	223, 227, 719, 723
AluI	AGCT	4 cut(s)	223, 227, 719, 723
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	708
AsuHPI	GGTGA	1 cut(s)	55
AsuNHI	GCTAGC	2 cut(s)	223, 719
BccI	CCATC	1 cut(s)	801
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	338
BfaI	CTAG	3 cut(s)	224, 720, 961
BfuAI	ACCTGC	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	3 cut(s)	14, 40, 442
BmtI	GCTAGC	2 cut(s)	227, 723
BmuI	ACTGGG	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse1I	ACTGG	4 cut(s)	14, 636, 679, 737
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	812
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	4 cut(s)	14, 636, 679, 737
BseRI	GAGGAG	3 cut(s)	651, 666, 938
BshFI	GGCC	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	146, 824
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmFI	GGGAC	2 cut(s)	146, 824
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	209, 937
BspACI	CCGC	2 cut(s)	66, 261
BspANI	GGCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	584
BspOI	GCTAGC	2 cut(s)	227, 723
BspPI	GGATC	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	4 cut(s)	14, 636, 679, 737
BssMI	GATC	2 cut(s)	209, 937
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	4 cut(s)	194, 504, 754, 802
Bst6I	CTCTTC	2 cut(s)	491, 696
BstC8I	GCNNGC	4 cut(s)	225, 334, 710, 721
BstDEI	CTNAG	3 cut(s)	622, 743, 917
BstENI	CCTNNNNNAGG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	812
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	2 cut(s)	212, 940
BstMBI	GATC	2 cut(s)	209, 937
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 28, 329, 585, 662, 671
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	812
BtsIMutI	CAGTG	3 cut(s)	21, 199, 629
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	4 cut(s)	225, 334, 710, 721
CfoI	GCGC	1 cut(s)	708
CviAII	CATG	5 cut(s)	172, 328, 460, 561, 584
DdeI	CTNAG	3 cut(s)	622, 743, 917
DpnI	GATC	2 cut(s)	211, 939
DpnII	GATC	2 cut(s)	209, 937
Eam1104I	CTCTTC	2 cut(s)	491, 696
EarI	CTCTTC	2 cut(s)	491, 696
EciI	GGCGGA	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	5 cut(s)	175, 331, 463, 564, 587
FaqI	GGGAC	2 cut(s)	146, 824
FatI	CATG	5 cut(s)	171, 327, 459, 560, 583
FokI	GGATG	1 cut(s)	819
FspBI	CTAG	3 cut(s)	224, 720, 961
GlaI	GCGC	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	708
Hin1II	CATG	5 cut(s)	175, 331, 463, 564, 587
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	8 cut(s)	73, 233, 441, 463, 569, 645, 658, 771
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	451, 650, 957
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	194, 504, 754, 802
HpyCH4V	TGCA	5 cut(s)	290, 416, 550, 629, 899
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 28, 329, 585, 662, 671
HpyF3I	CTNAG	3 cut(s)	622, 743, 917
Hsp92II	CATG	5 cut(s)	175, 331, 463, 564, 587
HspAI	GCGC	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	209, 937
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	1 cut(s)	653
LweI	GCATC	3 cut(s)	14, 40, 442
MaeI	CTAG	3 cut(s)	224, 720, 961
MaeIII	GTNAC	4 cut(s)	61, 159, 174, 772
MalI	GATC	2 cut(s)	211, 939
MboI	GATC	2 cut(s)	209, 937
MboII	GAAGA	3 cut(s)	253, 478, 713
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	5 cut(s)	167, 168, 415, 748, 784
MnlI	CCTC	8 cut(s)	162, 431, 479, 629, 632, 644, 956, 959
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	6 cut(s)	19, 28, 329, 585, 662, 671
NdeII	GATC	2 cut(s)	209, 937
NheI	GCTAGC	2 cut(s)	223, 719
NlaIII	CATG	5 cut(s)	175, 331, 463, 564, 587
NmuCI	GTSAC	2 cut(s)	61, 772
OliI	CACNNNNGTG	1 cut(s)	779
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	7 cut(s)	73, 233, 441, 463, 569, 645, 658
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	779
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	209, 937
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	3 cut(s)	14, 40, 442
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	66, 261
SspMI	CTAG	3 cut(s)	224, 720, 961
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	194, 504, 754, 802
TaqI	TCGA	2 cut(s)	212, 892
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	7 cut(s)	73, 233, 441, 463, 569, 645, 658
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	3 cut(s)	21, 199, 636
TseFI	GTSAC	2 cut(s)	61, 772
Tsp45I	GTSAC	2 cut(s)	61, 772
TspDTI	ATGAA	8 cut(s)	160, 246, 254, 271, 433, 476, 504, 572
TspRI	CASTG	3 cut(s)	21, 199, 636
XagI	CCTNNNNNAGG	1 cut(s)	666
XspI	CTAG	3 cut(s)	224, 720, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.