RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33540 AT2G33540 |
| fragaria_vesca | FvH4_4g22870 FvH4_4g22870 FvH4_4g22870 |
| malus_domestica | MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1 |
| prunus_persica | Prupe.1G217600_v2.0.a1 |
| pyrus_communis | pycom13g11190 pycom13g11200 pycom16g10920 |
| rosa_chinensis | RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121 |
| rosa_laevigata | RLG00000007096 |
| rosa_multiflora | Rmu_sc0000846.1_g000014 |
| rosa_roxburghii | Rroxscaffold_5G00370740 |
| rosa_rugosa | Rorug04G0233100 |
| rosa_samantha | Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000 |
| rosa_wichuraiana | Rw4G025040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 924 |
| Acc36I | ACCTGC | 1 cut(s) | 872 |
| AccB1I | GGYRCC | 1 cut(s) | 1981 |
| AccBSI | CCGCTC | 1 cut(s) | 732 |
| AccI | GTMKAC | 3 cut(s) | 668, 2278, 3257 |
| AccII | CGCG | 2 cut(s) | 243, 743 |
| AclI | AACGTT | 1 cut(s) | 2589 |
| AcoI | YGGCCR | 3 cut(s) | 1957, 2670, 3218 |
| AcsI | RAATTY | 6 cut(s) | 93, 106, 1738, 2868, 2972, 3235 |
| AcuI | CTGAAG | 5 cut(s) | 927, 1059, 1344, 1566, 3666 |
| AcvI | CACGTG | 1 cut(s) | 2676 |
| AcyI | GRCGYC | 1 cut(s) | 2204 |
| AfaI | GTAC | 5 cut(s) | 708, 886, 1936, 2346, 2640 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 277, 1052, 1108, 1456, 1457, 2002, 2803, 2955, 3125 |
| AflII | CTTAAG | 2 cut(s) | 1283, 2066 |
| AgeI | ACCGGT | 1 cut(s) | 612 |
| AjnI | CCWGG | 6 cut(s) | 270, 1498, 1930, 2149, 2959, 3664 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1990, 2022, 2125, 2157, 2200, 2232 |
| Alw21I | GWGCWC | 2 cut(s) | 380, 3566 |
| Alw26I | GTCTC | 5 cut(s) | 570, 1214, 1590, 2527, 3325 |
| Alw44I | GTGCAC | 1 cut(s) | 3562 |
| Ama87I | CYCGRG | 1 cut(s) | 1227 |
| AoxI | GGCC | 8 cut(s) | 285, 582, 1233, 1957, 1992, 2670, 2957, 3218 |
| ApaLI | GTGCAC | 1 cut(s) | 3562 |
| ApoI | RAATTY | 6 cut(s) | 93, 106, 1738, 2868, 2972, 3235 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1300, 1332 |
| AsiGI | ACCGGT | 1 cut(s) | 612 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2626, 3138 |
| AspA2I | CCTAGG | 1 cut(s) | 1601 |
| AspLEI | GCGC | 2 cut(s) | 743, 3074 |
| AspS9I | GGNCC | 8 cut(s) | 745, 1012, 1234, 1748, 1850, 1993, 2946, 3299 |
| AsuC2I | CCSGG | 1 cut(s) | 988 |
| AsuII | TTCGAA | 2 cut(s) | 104, 1736 |
| AsuNHI | GCTAGC | 1 cut(s) | 2465 |
| AvaI | CYCGRG | 1 cut(s) | 1227 |
| AvaII | GGWCC | 6 cut(s) | 745, 1012, 1748, 1850, 2946, 3299 |
| AvrII | CCTAGG | 1 cut(s) | 1601 |
| AxyI | CCTNAGG | 1 cut(s) | 1728 |
| BaeGI | GKGCMC | 1 cut(s) | 3566 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 987, 987, 1020, 1020 |
| BalI | TGGCCA | 1 cut(s) | 1959 |
| BamHI | GGATCC | 2 cut(s) | 2269, 3115 |
| BanI | GGYRCC | 1 cut(s) | 1981 |
| BanII | GRGCYC | 5 cut(s) | 283, 380, 2446, 2455, 3637 |
| BauI | CACGAG | 1 cut(s) | 1143 |
| BbrPI | CACGTG | 1 cut(s) | 2676 |
| BbsI | GAAGAC | 1 cut(s) | 1839 |
| Bbv12I | GWGCWC | 2 cut(s) | 380, 3566 |
| BbvCI | CCTCAGC | 1 cut(s) | 2604 |
| BceAI | ACGGC | 5 cut(s) | 272, 1852, 1969, 3170, 3296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1828, 1862 |
| BciT130I | CCWGG | 6 cut(s) | 272, 1500, 1932, 2151, 2961, 3666 |
| BciVI | GTATCC | 2 cut(s) | 774, 894 |
| BclI | TGATCA | 1 cut(s) | 3580 |
| BcnI | CCSGG | 1 cut(s) | 988 |
| BcoDI | GTCTC | 5 cut(s) | 570, 1214, 1590, 2527, 3325 |
| BfmI | CTRYAG | 4 cut(s) | 819, 1938, 2646, 3039 |
| BfoI | RGCGCY | 1 cut(s) | 3075 |
| BfrI | CTTAAG | 2 cut(s) | 1283, 2066 |
| BfuAI | ACCTGC | 1 cut(s) | 872 |
| BfuI | GTATCC | 2 cut(s) | 774, 894 |
| BglII | AGATCT | 1 cut(s) | 3387 |
| BlnI | CCTAGG | 1 cut(s) | 1601 |
| BlpI | GCTNAGC | 1 cut(s) | 2082 |
| Bme1390I | CCNGG | 7 cut(s) | 272, 988, 1500, 1932, 2151, 2961, 3666 |
| Bme18I | GGWCC | 6 cut(s) | 745, 1012, 1748, 1850, 2946, 3299 |
| BmeT110I | CYCGRG | 1 cut(s) | 1227 |
| BmgT120I | GGNCC | 8 cut(s) | 745, 1012, 1234, 1748, 1850, 1993, 2946, 3299 |
| BmiI | GGNNCC | 5 cut(s) | 1983, 1995, 2271, 2452, 3117 |
| BmrFI | CCNGG | 7 cut(s) | 272, 988, 1500, 1932, 2151, 2961, 3666 |
| BmtI | GCTAGC | 1 cut(s) | 2469 |
| BpiI | GAAGAC | 1 cut(s) | 1839 |
| BpmI | CTGGAG | 1 cut(s) | 2211 |
| Bpu10I | CCTNAGC | 3 cut(s) | 282, 548, 2604 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2082 |
| Bpu14I | TTCGAA | 2 cut(s) | 104, 1736 |
| BpuEI | CTTGAG | 3 cut(s) | 1693, 2122, 3332 |
| BpuMI | CCSGG | 1 cut(s) | 988 |
| BsaAI | YACGTR | 1 cut(s) | 2676 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1054, 2573, 2811, 3114 |
| BsaHI | GRCGYC | 1 cut(s) | 2204 |
| BsaI | GGTCTC | 1 cut(s) | 1590 |
| BsaJI | CCNNGG | 7 cut(s) | 153, 1498, 1601, 1878, 2149, 2960, 3610 |
| BsaWI | WCCGGW | 2 cut(s) | 612, 2922 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 431, 461, 2113, 2143 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 277, 1052, 1108, 1456, 1457, 2002, 2803, 2955, 3125 |
| Bse118I | RCCGGY | 2 cut(s) | 612, 2668 |
| Bse1I | ACTGG | 5 cut(s) | 957, 1178, 2623, 2855, 3497 |
| Bse21I | CCTNAGG | 1 cut(s) | 1728 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1054, 2573, 2811, 3114 |
| BseBI | CCWGG | 6 cut(s) | 272, 1500, 1932, 2151, 2961, 3666 |
| BseDI | CCNNGG | 7 cut(s) | 153, 1498, 1601, 1878, 2149, 2960, 3610 |
| BseJI | GATNNNNATC | 4 cut(s) | 1054, 2573, 2811, 3114 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 277, 1052, 1108, 1456, 1457, 2002, 2803, 2955, 3125 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 9 cut(s) | 296, 570, 1266, 1719, 1794, 2096, 2561, 2595, 3435 |
| BseNI | ACTGG | 5 cut(s) | 957, 1178, 2623, 2855, 3497 |
| BseRI | GAGGAG | 7 cut(s) | 131, 143, 452, 455, 458, 467, 657 |
| BseSI | GKGCMC | 1 cut(s) | 3566 |
| BseYI | CCCAGC | 1 cut(s) | 3669 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| Bsh1236I | CGCG | 2 cut(s) | 243, 743 |
| BshFI | GGCC | 8 cut(s) | 287, 584, 1235, 1959, 1994, 2672, 2959, 3220 |
| BshNI | GGYRCC | 1 cut(s) | 1981 |
| BshTI | ACCGGT | 1 cut(s) | 612 |
| BsiHKAI | GWGCWC | 2 cut(s) | 380, 3566 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1227 |
| BsiSI | CCGG | 5 cut(s) | 381, 613, 987, 2669, 2923 |
| BslFI | GGGAC | 4 cut(s) | 1028, 1092, 2334, 3628 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 277, 1052, 1108, 1456, 1457, 2002, 2803, 2955, 3125 |
| BsmAI | GTCTC | 5 cut(s) | 570, 1214, 1590, 2527, 3325 |
| BsmFI | GGGAC | 4 cut(s) | 1028, 1092, 2334, 3628 |
| BsnI | GGCC | 8 cut(s) | 287, 584, 1235, 1959, 1994, 2672, 2959, 3220 |
| Bso31I | GGTCTC | 1 cut(s) | 1590 |
| BsoBI | CYCGRG | 1 cut(s) | 1227 |
| Bsp119I | TTCGAA | 2 cut(s) | 104, 1736 |
| Bsp1286I | GDGCHC | 6 cut(s) | 283, 380, 2446, 2455, 3566, 3637 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2082 |
| BspANI | GGCC | 8 cut(s) | 287, 584, 1235, 1959, 1994, 2672, 2959, 3220 |
| BspCNI | CTCAG | 9 cut(s) | 295, 571, 1267, 1720, 1793, 2095, 2560, 2596, 3436 |
| BspFNI | CGCG | 2 cut(s) | 243, 743 |
| BspHI | TCATGA | 3 cut(s) | 214, 1114, 3322 |
| BspLI | GGNNCC | 5 cut(s) | 1983, 1995, 2271, 2452, 3117 |
| BspMAI | CTGCAG | 2 cut(s) | 823, 2650 |
| BspMI | ACCTGC | 1 cut(s) | 872 |
| BspOI | GCTAGC | 1 cut(s) | 2469 |
| BspT104I | TTCGAA | 2 cut(s) | 104, 1736 |
| BspT107I | GGYRCC | 1 cut(s) | 1981 |
| BspTI | CTTAAG | 2 cut(s) | 1283, 2066 |
| BspTNI | GGTCTC | 1 cut(s) | 1590 |
| BsrBI | CCGCTC | 1 cut(s) | 732 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BsrFI | RCCGGY | 2 cut(s) | 612, 2668 |
| BsrI | ACTGG | 5 cut(s) | 957, 1178, 2623, 2855, 3497 |
| BssAI | RCCGGY | 2 cut(s) | 612, 2668 |
| BssECI | CCNNGG | 7 cut(s) | 153, 1498, 1601, 1878, 2149, 2960, 3610 |
| BssNAI | GTATAC | 1 cut(s) | 3258 |
| BssNI | GRCGYC | 1 cut(s) | 2204 |
| BssSI | CACGAG | 1 cut(s) | 1143 |
| BssT1I | CCWWGG | 3 cut(s) | 153, 1601, 3610 |
| Bst1107I | GTATAC | 1 cut(s) | 3258 |
| Bst2BI | CACGAG | 1 cut(s) | 1143 |
| Bst2UI | CCWGG | 6 cut(s) | 272, 1500, 1932, 2151, 2961, 3666 |
| Bst6I | CTCTTC | 3 cut(s) | 43, 1359, 2924 |
| BstACI | GRCGYC | 1 cut(s) | 2204 |
| BstAFI | CTTAAG | 2 cut(s) | 1283, 2066 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1538, 2654 |
| BstBAI | YACGTR | 1 cut(s) | 2676 |
| BstBI | TTCGAA | 2 cut(s) | 104, 1736 |
| BstC8I | GCNNGC | 4 cut(s) | 638, 1514, 2016, 2467 |
| BstDSI | CCRYGG | 1 cut(s) | 1878 |
| BstEII | GGTNACC | 1 cut(s) | 3586 |
| BstFNI | CGCG | 2 cut(s) | 243, 743 |
| BstH2I | RGCGCY | 1 cut(s) | 3075 |
| BstHHI | GCGC | 2 cut(s) | 743, 3074 |
| BstMAI | GTCTC | 5 cut(s) | 570, 1214, 1590, 2527, 3325 |
| BstNI | CCWGG | 6 cut(s) | 272, 1500, 1932, 2151, 2961, 3666 |
| BstNSI | RCATGY | 3 cut(s) | 1161, 1265, 1516 |
| BstPI | GGTNACC | 1 cut(s) | 3586 |
| BstSCI | CCNGG | 7 cut(s) | 270, 986, 1498, 1930, 2149, 2959, 3664 |
| BstSFI | CTRYAG | 4 cut(s) | 819, 1938, 2646, 3039 |
| BstSLI | GKGCMC | 1 cut(s) | 3566 |
| BstUI | CGCG | 2 cut(s) | 243, 743 |
| BstV2I | GAAGAC | 1 cut(s) | 1839 |
| BstX2I | RGATCY | 6 cut(s) | 2269, 2806, 3061, 3115, 3154, 3387 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1909 |
| BstYI | RGATCY | 6 cut(s) | 2269, 2806, 3061, 3115, 3154, 3387 |
| BstZ17I | GTATAC | 1 cut(s) | 3258 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1728 |
| BsuI | GTATCC | 2 cut(s) | 774, 894 |
| BsuRI | GGCC | 8 cut(s) | 287, 584, 1235, 1959, 1994, 2672, 2959, 3220 |
| BtgI | CCRYGG | 1 cut(s) | 1878 |
| BtgZI | GCGATG | 1 cut(s) | 429 |
| BtsIMutI | CAGTG | 7 cut(s) | 117, 130, 415, 911, 1185, 1788, 2862 |
| BveI | ACCTGC | 1 cut(s) | 872 |
| Cac8I | GCNNGC | 4 cut(s) | 638, 1514, 2016, 2467 |
| CciI | TCATGA | 3 cut(s) | 214, 1114, 3322 |
| CfoI | GCGC | 2 cut(s) | 743, 3074 |
| Cfr10I | RCCGGY | 2 cut(s) | 612, 2668 |
| Cfr13I | GGNCC | 8 cut(s) | 745, 1012, 1234, 1748, 1850, 1993, 2946, 3299 |
| CseI | GACGC | 2 cut(s) | 1410, 2212 |
| Csp6I | GTAC | 5 cut(s) | 707, 885, 1935, 2345, 2639 |
| CspAI | ACCGGT | 1 cut(s) | 612 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1764, 1799 |
| CviQI | GTAC | 5 cut(s) | 707, 885, 1935, 2345, 2639 |
| DraI | TTTAAA | 1 cut(s) | 2026 |
| EaeI | YGGCCR | 3 cut(s) | 1957, 2670, 3218 |
| Eam1104I | CTCTTC | 3 cut(s) | 43, 1359, 2924 |
| EarI | CTCTTC | 3 cut(s) | 43, 1359, 2924 |
| Ecl136II | GAGCTC | 1 cut(s) | 378 |
| Eco130I | CCWWGG | 3 cut(s) | 153, 1601, 3610 |
| Eco24I | GRGCYC | 5 cut(s) | 283, 380, 2446, 2455, 3637 |
| Eco31I | GGTCTC | 1 cut(s) | 1590 |
| Eco47I | GGWCC | 6 cut(s) | 745, 1012, 1748, 1850, 2946, 3299 |
| Eco53kI | GAGCTC | 1 cut(s) | 378 |
| Eco57I | CTGAAG | 5 cut(s) | 927, 1059, 1344, 1566, 3666 |
| Eco72I | CACGTG | 1 cut(s) | 2676 |
| Eco81I | CCTNAGG | 1 cut(s) | 1728 |
| Eco88I | CYCGRG | 1 cut(s) | 1227 |
| Eco91I | GGTNACC | 1 cut(s) | 3586 |
| EcoICRI | GAGCTC | 1 cut(s) | 378 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3299 |
| EcoO65I | GGTNACC | 1 cut(s) | 3586 |
| EcoRI | GAATTC | 1 cut(s) | 106 |
| EcoRII | CCWGG | 6 cut(s) | 270, 1498, 1930, 2149, 2959, 3664 |
| EcoT14I | CCWWGG | 3 cut(s) | 153, 1601, 3610 |
| EcoT22I | ATGCAT | 3 cut(s) | 1263, 1518, 3009 |
| EcoT38I | GRGCYC | 5 cut(s) | 283, 380, 2446, 2455, 3637 |
| ErhI | CCWWGG | 3 cut(s) | 153, 1601, 3610 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 666, 698, 1113, 1145 |
| FaqI | GGGAC | 4 cut(s) | 1028, 1092, 2334, 3628 |
| FauNDI | CATATG | 1 cut(s) | 2934 |
| FbaI | TGATCA | 1 cut(s) | 3580 |
| FblI | GTMKAC | 3 cut(s) | 668, 2278, 3257 |
| FriOI | GRGCYC | 5 cut(s) | 283, 380, 2446, 2455, 3637 |
| GlaI | GCGC | 2 cut(s) | 742, 3073 |
| GsaI | CCCAGC | 1 cut(s) | 3673 |
| GsuI | CTGGAG | 1 cut(s) | 2211 |
| HaeII | RGCGCY | 1 cut(s) | 3075 |
| HaeIII | GGCC | 8 cut(s) | 287, 584, 1235, 1959, 1994, 2672, 2959, 3220 |
| HapII | CCGG | 5 cut(s) | 381, 613, 987, 2669, 2923 |
| HgaI | GACGC | 2 cut(s) | 1410, 2212 |
| HhaI | GCGC | 2 cut(s) | 743, 3074 |
| Hin1I | GRCGYC | 1 cut(s) | 2204 |
| Hin6I | GCGC | 2 cut(s) | 741, 3072 |
| HinP1I | GCGC | 2 cut(s) | 741, 3072 |
| HincII | GTYRAC | 4 cut(s) | 76, 669, 2059, 2279 |
| HindII | GTYRAC | 4 cut(s) | 76, 669, 2059, 2279 |
| HindIII | AAGCTT | 3 cut(s) | 634, 1999, 3678 |
| HpaI | GTTAAC | 1 cut(s) | 2059 |
| HpaII | CCGG | 5 cut(s) | 381, 613, 987, 2669, 2923 |
| Hpy99I | CGWCG | 3 cut(s) | 338, 373, 2280 |
| HpyCH4IV | ACGT | 4 cut(s) | 78, 209, 2589, 2675 |
| HpySE526I | ACGT | 4 cut(s) | 78, 209, 2589, 2675 |
| Hsp92I | GRCGYC | 1 cut(s) | 2204 |
| HspAI | GCGC | 2 cut(s) | 741, 3072 |
| Ksp22I | TGATCA | 1 cut(s) | 3580 |
| KspAI | GTTAAC | 1 cut(s) | 2059 |
| LmnI | GCTCC | 7 cut(s) | 194, 383, 737, 754, 2104, 2192, 2450 |
| MaeII | ACGT | 4 cut(s) | 78, 209, 2589, 2675 |
| MaeIII | GTNAC | 3 cut(s) | 608, 2425, 3586 |
| MbiI | CCGCTC | 1 cut(s) | 732 |
| MflI | RGATCY | 6 cut(s) | 2269, 2806, 3061, 3115, 3154, 3387 |
| MhlI | GDGCHC | 6 cut(s) | 283, 380, 2446, 2455, 3566, 3637 |
| MlsI | TGGCCA | 1 cut(s) | 1959 |
| MluNI | TGGCCA | 1 cut(s) | 1959 |
| MlyI | GAGTC | 2 cut(s) | 572, 1348 |
| MmeI | TCCRAC | 8 cut(s) | 306, 357, 429, 1809, 1828, 2069, 2255, 3089 |
| Mox20I | TGGCCA | 1 cut(s) | 1959 |
| Mph1103I | ATGCAT | 3 cut(s) | 1263, 1518, 3009 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2626, 3138 |
| MscI | TGGCCA | 1 cut(s) | 1959 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1156, 1266, 2292, 3339 |
| Msp20I | TGGCCA | 1 cut(s) | 1959 |
| MspA1I | CMGCKG | 2 cut(s) | 2651, 3542 |
| MspCI | CTTAAG | 2 cut(s) | 1283, 2066 |
| MspI | CCGG | 5 cut(s) | 381, 613, 987, 2669, 2923 |
| MspR9I | CCNGG | 7 cut(s) | 272, 988, 1500, 1932, 2151, 2961, 3666 |
| MvaI | CCWGG | 6 cut(s) | 272, 1500, 1932, 2151, 2961, 3666 |
| MvnI | CGCG | 2 cut(s) | 243, 743 |
| NciI | CCSGG | 1 cut(s) | 988 |
| NdeI | CATATG | 1 cut(s) | 2934 |
| NheI | GCTAGC | 1 cut(s) | 2465 |
| NlaIV | GGNNCC | 5 cut(s) | 1983, 1995, 2271, 2452, 3117 |
| NmeAIII | GCCGAG | 1 cut(s) | 610 |
| NmuCI | GTSAC | 1 cut(s) | 608 |
| NsiI | ATGCAT | 3 cut(s) | 1263, 1518, 3009 |
| NspI | RCATGY | 3 cut(s) | 1161, 1265, 1516 |
| NspV | TTCGAA | 2 cut(s) | 104, 1736 |
| PacI | TTAATTAA | 1 cut(s) | 1863 |
| PaeI | GCATGC | 1 cut(s) | 1516 |
| PagI | TCATGA | 3 cut(s) | 214, 1114, 3322 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2272 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2626, 3138 |
| PinAI | ACCGGT | 1 cut(s) | 612 |
| PleI | GAGTC | 2 cut(s) | 571, 1348 |
| PmaCI | CACGTG | 1 cut(s) | 2676 |
| PmlI | CACGTG | 1 cut(s) | 2676 |
| PpsI | GAGTC | 2 cut(s) | 571, 1348 |
| Ppu21I | YACGTR | 1 cut(s) | 2676 |
| PpuMI | RGGWCCY | 1 cut(s) | 3299 |
| PsiI | TTATAA | 1 cut(s) | 924 |
| Psp124BI | GAGCTC | 1 cut(s) | 380 |
| Psp1406I | AACGTT | 1 cut(s) | 2589 |
| Psp5II | RGGWCCY | 1 cut(s) | 3299 |
| Psp6I | CCWGG | 6 cut(s) | 270, 1498, 1930, 2149, 2959, 3664 |
| PspCI | CACGTG | 1 cut(s) | 2676 |
| PspEI | GGTNACC | 1 cut(s) | 3586 |
| PspFI | CCCAGC | 1 cut(s) | 3669 |
| PspGI | CCWGG | 6 cut(s) | 270, 1498, 1930, 2149, 2959, 3664 |
| PspN4I | GGNNCC | 5 cut(s) | 1983, 1995, 2271, 2452, 3117 |
| PspPI | GGNCC | 8 cut(s) | 745, 1012, 1234, 1748, 1850, 1993, 2946, 3299 |
| PspPPI | RGGWCCY | 1 cut(s) | 3299 |
| PstI | CTGCAG | 2 cut(s) | 823, 2650 |
| PsuI | RGATCY | 6 cut(s) | 2269, 2806, 3061, 3115, 3154, 3387 |
| PvuII | CAGCTG | 2 cut(s) | 2651, 3542 |
| RsaI | GTAC | 5 cut(s) | 708, 886, 1936, 2346, 2640 |
| RsaNI | GTAC | 5 cut(s) | 707, 885, 1935, 2345, 2639 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1156, 1266, 2292, 3339 |
| SacI | GAGCTC | 1 cut(s) | 380 |
| SalI | GTCGAC | 2 cut(s) | 667, 2277 |
| Sau96I | GGNCC | 8 cut(s) | 745, 1012, 1234, 1748, 1850, 1993, 2946, 3299 |
| SchI | GAGTC | 2 cut(s) | 572, 1348 |
| ScrFI | CCNGG | 7 cut(s) | 272, 988, 1500, 1932, 2151, 2961, 3666 |
| SduI | GDGCHC | 6 cut(s) | 283, 380, 2446, 2455, 3566, 3637 |
| SfcI | CTRYAG | 4 cut(s) | 819, 1938, 2646, 3039 |
| SfuI | TTCGAA | 2 cut(s) | 104, 1736 |
| SinI | GGWCC | 6 cut(s) | 745, 1012, 1748, 1850, 2946, 3299 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1156, 1266, 2292, 3339 |
| SmlI | CTYRAG | 5 cut(s) | 1283, 1708, 2066, 2137, 3311 |
| SmoI | CTYRAG | 5 cut(s) | 1283, 1708, 2066, 2137, 3311 |
| SphI | GCATGC | 1 cut(s) | 1516 |
| SspI | AATATT | 4 cut(s) | 2022, 2341, 2494, 3433 |
| SstI | GAGCTC | 1 cut(s) | 380 |
| StyD4I | CCNGG | 7 cut(s) | 270, 986, 1498, 1930, 2149, 2959, 3664 |
| StyI | CCWWGG | 3 cut(s) | 153, 1601, 3610 |
| TaiI | ACGT | 4 cut(s) | 81, 212, 2592, 2678 |
| TaqI | TCGA | 8 cut(s) | 17, 104, 344, 668, 1609, 1736, 2278, 2850 |
| TauI | GCSGC | 8 cut(s) | 246, 255, 258, 486, 503, 1235, 2959, 3223 |
| TscAI | CASTG | 7 cut(s) | 117, 130, 415, 911, 1185, 1788, 2862 |
| TseFI | GTSAC | 1 cut(s) | 608 |
| Tsp45I | GTSAC | 1 cut(s) | 608 |
| TspGWI | ACGGA | 3 cut(s) | 944, 2249, 2576 |
| TspRI | CASTG | 7 cut(s) | 117, 130, 415, 911, 1185, 1788, 2862 |
| Vha464I | CTTAAG | 2 cut(s) | 1283, 2066 |
| VneI | GTGCAC | 1 cut(s) | 3562 |
| VpaK11BI | GGWCC | 6 cut(s) | 745, 1012, 1748, 1850, 2946, 3299 |
| XapI | RAATTY | 6 cut(s) | 93, 106, 1738, 2868, 2972, 3235 |
| XbaI | TCTAGA | 2 cut(s) | 2809, 3098 |
| XceI | RCATGY | 3 cut(s) | 1161, 1265, 1516 |
| XmaJI | CCTAGG | 1 cut(s) | 1601 |
| XmiI | GTMKAC | 3 cut(s) | 668, 2278, 3257 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2626, 3138 |
| Zsp2I | ATGCAT | 3 cut(s) | 1263, 1518, 3009 |