RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33540 AT2G33540 |
| fragaria_vesca | FvH4_4g22870 FvH4_4g22870 FvH4_4g22870 |
| malus_domestica | MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1 |
| prunus_persica | Prupe.1G217600_v2.0.a1 |
| pyrus_communis | pycom13g11190 pycom13g11200 pycom16g10920 |
| rosa_chinensis | RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121 |
| rosa_laevigata | RLG00000007096 |
| rosa_multiflora | Rmu_sc0000846.1_g000014 |
| rosa_roxburghii | Rroxscaffold_5G00370740 |
| rosa_rugosa | Rorug04G0233100 |
| rosa_samantha | Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000 |
| rosa_wichuraiana | Rw4G025040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2062, 2272 |
| Acc36I | ACCTGC | 5 cut(s) | 962, 1241, 2062, 2272, 2759 |
| AccB1I | GGYRCC | 1 cut(s) | 2074 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1972 |
| AccI | GTMKAC | 2 cut(s) | 746, 3374 |
| AccII | CGCG | 1 cut(s) | 276 |
| AcoI | YGGCCR | 2 cut(s) | 2787, 3335 |
| AcsI | RAATTY | 6 cut(s) | 123, 1414, 2985, 3088, 3352, 3721 |
| AcuI | CTGAAG | 4 cut(s) | 123, 1065, 1437, 1659 |
| AcvI | CACGTG | 1 cut(s) | 2793 |
| AfaI | GTAC | 5 cut(s) | 786, 976, 2029, 2451, 2658 |
| AflII | CTTAAG | 2 cut(s) | 1376, 2159 |
| AjnI | CCWGG | 5 cut(s) | 300, 2023, 2254, 3076, 3781 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2305, 2337 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1519, 1551 |
| Alw21I | GWGCWC | 4 cut(s) | 345, 2243, 2263, 3683 |
| Alw26I | GTCTC | 5 cut(s) | 648, 692, 1307, 1683, 3442 |
| Alw44I | GTGCAC | 1 cut(s) | 3679 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 560, 1640, 2549, 2561 |
| Ama87I | CYCGRG | 2 cut(s) | 265, 1320 |
| AoxI | GGCC | 7 cut(s) | 315, 660, 1326, 2787, 3074, 3335, 3555 |
| ApaLI | GTGCAC | 1 cut(s) | 3679 |
| ApoI | RAATTY | 6 cut(s) | 123, 1414, 2985, 3088, 3352, 3721 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1393, 1425 |
| AseI | ATTAAT | 4 cut(s) | 1002, 2007, 2081, 2490 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2685 |
| AspA2I | CCTAGG | 2 cut(s) | 61, 1694 |
| AspLEI | GCGC | 1 cut(s) | 1513 |
| AspS9I | GGNCC | 9 cut(s) | 285, 1327, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| AsuC2I | CCSGG | 3 cut(s) | 266, 267, 2372 |
| AsuNHI | GCTAGC | 2 cut(s) | 1595, 2570 |
| AvaI | CYCGRG | 2 cut(s) | 265, 1320 |
| AvaII | GGWCC | 8 cut(s) | 285, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| AvrII | CCTAGG | 2 cut(s) | 61, 1694 |
| AxyI | CCTNAGG | 1 cut(s) | 1821 |
| BaeGI | GKGCMC | 4 cut(s) | 2053, 2214, 3683, 3754 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1020, 1053 |
| BalI | TGGCCA | 1 cut(s) | 3337 |
| BamHI | GGATCC | 3 cut(s) | 14, 2374, 3232 |
| BanI | GGYRCC | 1 cut(s) | 2074 |
| BanII | GRGCYC | 5 cut(s) | 313, 345, 821, 2243, 3193 |
| BauI | CACGAG | 1 cut(s) | 1236 |
| BbrPI | CACGTG | 1 cut(s) | 2793 |
| BbsI | GAAGAC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 4 cut(s) | 345, 2243, 2263, 3683 |
| BbvCI | CCTCAGC | 1 cut(s) | 2721 |
| BceAI | ACGGC | 3 cut(s) | 302, 767, 3413 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 31, 65, 82, 116, 2744, 2778 |
| BciT130I | CCWGG | 5 cut(s) | 302, 2025, 2256, 3078, 3783 |
| BciVI | GTATCC | 1 cut(s) | 852 |
| BclI | TGATCA | 3 cut(s) | 2710, 3436, 3697 |
| BcnI | CCSGG | 3 cut(s) | 266, 267, 2372 |
| BcoDI | GTCTC | 5 cut(s) | 648, 692, 1307, 1683, 3442 |
| BfmI | CTRYAG | 3 cut(s) | 2550, 2763, 3156 |
| BfrI | CTTAAG | 2 cut(s) | 1376, 2159 |
| BfuAI | ACCTGC | 5 cut(s) | 962, 1241, 2062, 2272, 2759 |
| BfuI | GTATCC | 1 cut(s) | 852 |
| BglII | AGATCT | 1 cut(s) | 3504 |
| BlnI | CCTAGG | 2 cut(s) | 61, 1694 |
| BlpI | GCTNAGC | 3 cut(s) | 900, 2095, 2193 |
| Bme1390I | CCNGG | 8 cut(s) | 266, 267, 302, 2025, 2256, 2372, 3078, 3783 |
| Bme18I | GGWCC | 8 cut(s) | 285, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| BmeT110I | CYCGRG | 2 cut(s) | 265, 1320 |
| BmgT120I | GGNCC | 9 cut(s) | 285, 1327, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| BmiI | GGNNCC | 8 cut(s) | 16, 286, 1964, 2076, 2376, 2682, 3234, 3258 |
| BmrFI | CCNGG | 8 cut(s) | 266, 267, 302, 2025, 2256, 2372, 3078, 3783 |
| BmsI | GCATC | 8 cut(s) | 214, 234, 2636, 2818, 3111, 3133, 3479, 3787 |
| BmtI | GCTAGC | 2 cut(s) | 1599, 2574 |
| BpiI | GAAGAC | 1 cut(s) | 396 |
| BpmI | CTGGAG | 2 cut(s) | 2277, 2316 |
| Bpu10I | CCTNAGC | 3 cut(s) | 312, 626, 2721 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 900, 2095, 2193 |
| BpuEI | CTTGAG | 2 cut(s) | 1786, 2227 |
| BpuMI | CCSGG | 3 cut(s) | 266, 267, 2372 |
| BsaAI | YACGTR | 1 cut(s) | 2793 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2928, 3231 |
| BsaI | GGTCTC | 1 cut(s) | 1683 |
| BsaJI | CCNNGG | 6 cut(s) | 61, 265, 266, 1694, 2392, 3077 |
| BsaWI | WCCGGW | 4 cut(s) | 287, 690, 825, 3039 |
| Bse118I | RCCGGY | 2 cut(s) | 412, 2785 |
| Bse1I | ACTGG | 4 cut(s) | 1047, 2046, 2972, 3614 |
| Bse21I | CCTNAGG | 1 cut(s) | 1821 |
| Bse3DI | GCAATG | 2 cut(s) | 433, 2565 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2928, 3231 |
| BseBI | CCWGG | 5 cut(s) | 302, 2025, 2256, 3078, 3783 |
| BseDI | CCNNGG | 6 cut(s) | 61, 265, 266, 1694, 2392, 3077 |
| BseJI | GATNNNNATC | 2 cut(s) | 2928, 3231 |
| BseMI | GCAATG | 2 cut(s) | 433, 2565 |
| BseNI | ACTGG | 4 cut(s) | 1047, 2046, 2972, 3614 |
| BseSI | GKGCMC | 4 cut(s) | 2053, 2214, 3683, 3754 |
| BseYI | CCCAGC | 1 cut(s) | 3786 |
| BsgI | GTGCAG | 3 cut(s) | 341, 1653, 2733 |
| Bsh1236I | CGCG | 1 cut(s) | 276 |
| Bsh1285I | CGRYCG | 1 cut(s) | 398 |
| BshFI | GGCC | 7 cut(s) | 317, 662, 1328, 2789, 3076, 3337, 3557 |
| BshNI | GGYRCC | 1 cut(s) | 2074 |
| BsiEI | CGRYCG | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 4 cut(s) | 345, 2243, 2263, 3683 |
| BsiHKCI | CYCGRG | 2 cut(s) | 265, 1320 |
| BsiSI | CCGG | 9 cut(s) | 266, 288, 413, 423, 691, 826, 2371, 2786, 3040 |
| BslFI | GGGAC | 4 cut(s) | 263, 1521, 2439, 3745 |
| BsmAI | GTCTC | 5 cut(s) | 648, 692, 1307, 1683, 3442 |
| BsmFI | GGGAC | 4 cut(s) | 263, 1521, 2439, 3745 |
| BsnI | GGCC | 7 cut(s) | 317, 662, 1328, 2789, 3076, 3337, 3557 |
| Bso31I | GGTCTC | 1 cut(s) | 1683 |
| BsoBI | CYCGRG | 2 cut(s) | 265, 1320 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 900, 2095, 2193 |
| BspANI | GGCC | 7 cut(s) | 317, 662, 1328, 2789, 3076, 3337, 3557 |
| BspFNI | CGCG | 1 cut(s) | 276 |
| BspHI | TCATGA | 2 cut(s) | 1207, 3439 |
| BspLI | GGNNCC | 8 cut(s) | 16, 286, 1964, 2076, 2376, 2682, 3234, 3258 |
| BspMAI | CTGCAG | 1 cut(s) | 2767 |
| BspMI | ACCTGC | 5 cut(s) | 962, 1241, 2062, 2272, 2759 |
| BspOI | GCTAGC | 2 cut(s) | 1599, 2574 |
| BspT107I | GGYRCC | 1 cut(s) | 2074 |
| BspTI | CTTAAG | 2 cut(s) | 1376, 2159 |
| BspTNI | GGTCTC | 1 cut(s) | 1683 |
| BsrDI | GCAATG | 2 cut(s) | 433, 2565 |
| BsrFI | RCCGGY | 2 cut(s) | 412, 2785 |
| BsrI | ACTGG | 4 cut(s) | 1047, 2046, 2972, 3614 |
| BssAI | RCCGGY | 2 cut(s) | 412, 2785 |
| BssECI | CCNNGG | 6 cut(s) | 61, 265, 266, 1694, 2392, 3077 |
| BssNAI | GTATAC | 1 cut(s) | 3375 |
| BssSI | CACGAG | 1 cut(s) | 1236 |
| BssT1I | CCWWGG | 2 cut(s) | 61, 1694 |
| Bst1107I | GTATAC | 1 cut(s) | 3375 |
| Bst2BI | CACGAG | 1 cut(s) | 1236 |
| Bst2UI | CCWGG | 5 cut(s) | 302, 2025, 2256, 3078, 3783 |
| Bst6I | CTCTTC | 3 cut(s) | 363, 1452, 3041 |
| BstAFI | CTTAAG | 2 cut(s) | 1376, 2159 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 560, 1631, 2910 |
| BstBAI | YACGTR | 1 cut(s) | 2793 |
| BstDSI | CCRYGG | 1 cut(s) | 2392 |
| BstEII | GGTNACC | 1 cut(s) | 3703 |
| BstFNI | CGCG | 1 cut(s) | 276 |
| BstHHI | GCGC | 1 cut(s) | 1513 |
| BstMAI | GTCTC | 5 cut(s) | 648, 692, 1307, 1683, 3442 |
| BstMCI | CGRYCG | 1 cut(s) | 398 |
| BstNI | CCWGG | 5 cut(s) | 302, 2025, 2256, 3078, 3783 |
| BstPI | GGTNACC | 1 cut(s) | 3703 |
| BstSCI | CCNGG | 8 cut(s) | 264, 265, 300, 2023, 2254, 2370, 3076, 3781 |
| BstSFI | CTRYAG | 3 cut(s) | 2550, 2763, 3156 |
| BstSLI | GKGCMC | 4 cut(s) | 2053, 2214, 3683, 3754 |
| BstUI | CGCG | 1 cut(s) | 276 |
| BstV2I | GAAGAC | 1 cut(s) | 396 |
| BstX2I | RGATCY | 8 cut(s) | 14, 2374, 2923, 2968, 3178, 3232, 3271, 3504 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1591 |
| BstYI | RGATCY | 8 cut(s) | 14, 2374, 2923, 2968, 3178, 3232, 3271, 3504 |
| BstZ17I | GTATAC | 1 cut(s) | 3375 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1821 |
| BsuI | GTATCC | 1 cut(s) | 852 |
| BsuRI | GGCC | 7 cut(s) | 317, 662, 1328, 2789, 3076, 3337, 3557 |
| BtgI | CCRYGG | 1 cut(s) | 2392 |
| BtsI | GCAGTG | 1 cut(s) | 777 |
| BtsIMutI | CAGTG | 8 cut(s) | 147, 160, 469, 777, 1881, 2053, 2550, 2979 |
| BveI | ACCTGC | 5 cut(s) | 962, 1241, 2062, 2272, 2759 |
| CaiI | CAGNNNCTG | 4 cut(s) | 560, 1640, 2549, 2561 |
| CciI | TCATGA | 2 cut(s) | 1207, 3439 |
| CfoI | GCGC | 1 cut(s) | 1513 |
| Cfr10I | RCCGGY | 2 cut(s) | 412, 2785 |
| Cfr13I | GGNCC | 9 cut(s) | 285, 1327, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| Cfr9I | CCCGGG | 1 cut(s) | 265 |
| CseI | GACGC | 1 cut(s) | 3786 |
| Csp6I | GTAC | 5 cut(s) | 785, 975, 2028, 2450, 2657 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1305, 1340, 1857, 1892 |
| CviQI | GTAC | 5 cut(s) | 785, 975, 2028, 2450, 2657 |
| EaeI | YGGCCR | 2 cut(s) | 2787, 3335 |
| Eam1104I | CTCTTC | 3 cut(s) | 363, 1452, 3041 |
| EarI | CTCTTC | 3 cut(s) | 363, 1452, 3041 |
| EciI | GGCGGA | 1 cut(s) | 222 |
| Ecl136II | GAGCTC | 2 cut(s) | 343, 2241 |
| Eco130I | CCWWGG | 2 cut(s) | 61, 1694 |
| Eco24I | GRGCYC | 5 cut(s) | 313, 345, 821, 2243, 3193 |
| Eco31I | GGTCTC | 1 cut(s) | 1683 |
| Eco32I | GATATC | 2 cut(s) | 930, 2292 |
| Eco47I | GGWCC | 8 cut(s) | 285, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| Eco53kI | GAGCTC | 2 cut(s) | 343, 2241 |
| Eco57I | CTGAAG | 4 cut(s) | 123, 1065, 1437, 1659 |
| Eco72I | CACGTG | 1 cut(s) | 2793 |
| Eco81I | CCTNAGG | 1 cut(s) | 1821 |
| Eco88I | CYCGRG | 2 cut(s) | 265, 1320 |
| Eco91I | GGTNACC | 1 cut(s) | 3703 |
| EcoICRI | GAGCTC | 2 cut(s) | 343, 2241 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3416 |
| EcoO65I | GGTNACC | 1 cut(s) | 3703 |
| EcoRI | GAATTC | 2 cut(s) | 1414, 3721 |
| EcoRII | CCWGG | 5 cut(s) | 300, 2023, 2254, 3076, 3781 |
| EcoRV | GATATC | 2 cut(s) | 930, 2292 |
| EcoT14I | CCWWGG | 2 cut(s) | 61, 1694 |
| EcoT22I | ATGCAT | 2 cut(s) | 1356, 3126 |
| EcoT38I | GRGCYC | 5 cut(s) | 313, 345, 821, 2243, 3193 |
| ErhI | CCWWGG | 2 cut(s) | 61, 1694 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 744, 776, 1206, 1238, 2083, 2115 |
| FaqI | GGGAC | 4 cut(s) | 263, 1521, 2439, 3745 |
| FauI | CCCGC | 2 cut(s) | 240, 2221 |
| FauNDI | CATATG | 1 cut(s) | 3051 |
| FbaI | TGATCA | 3 cut(s) | 2710, 3436, 3697 |
| FblI | GTMKAC | 2 cut(s) | 746, 3374 |
| FriOI | GRGCYC | 5 cut(s) | 313, 345, 821, 2243, 3193 |
| GlaI | GCGC | 1 cut(s) | 1512 |
| GsaI | CCCAGC | 1 cut(s) | 3790 |
| GsuI | CTGGAG | 2 cut(s) | 2277, 2316 |
| HaeIII | GGCC | 7 cut(s) | 317, 662, 1328, 2789, 3076, 3337, 3557 |
| HapII | CCGG | 9 cut(s) | 266, 288, 413, 423, 691, 826, 2371, 2786, 3040 |
| HgaI | GACGC | 1 cut(s) | 3786 |
| HhaI | GCGC | 1 cut(s) | 1513 |
| Hin6I | GCGC | 1 cut(s) | 1511 |
| HinP1I | GCGC | 1 cut(s) | 1511 |
| HincII | GTYRAC | 2 cut(s) | 298, 1012 |
| HindII | GTYRAC | 2 cut(s) | 298, 1012 |
| HindIII | AAGCTT | 2 cut(s) | 712, 2419 |
| HpaI | GTTAAC | 2 cut(s) | 298, 1012 |
| HpaII | CCGG | 9 cut(s) | 266, 288, 413, 423, 691, 826, 2371, 2786, 3040 |
| Hpy99I | CGWCG | 1 cut(s) | 403 |
| HpyCH4IV | ACGT | 1 cut(s) | 2792 |
| HpySE526I | ACGT | 1 cut(s) | 2792 |
| HspAI | GCGC | 1 cut(s) | 1511 |
| KroI | GCCGGC | 1 cut(s) | 2785 |
| KroNI | GCCGGC | 1 cut(s) | 2787 |
| Ksp22I | TGATCA | 3 cut(s) | 2710, 3436, 3697 |
| KspAI | GTTAAC | 2 cut(s) | 298, 1012 |
| LmnI | GCTCC | 4 cut(s) | 832, 2258, 2297, 2338 |
| LweI | GCATC | 8 cut(s) | 214, 234, 2636, 2818, 3111, 3133, 3479, 3787 |
| MaeII | ACGT | 1 cut(s) | 2792 |
| MaeIII | GTNAC | 2 cut(s) | 3140, 3703 |
| MfeI | CAATTG | 3 cut(s) | 19, 37, 1752 |
| MflI | RGATCY | 8 cut(s) | 14, 2374, 2923, 2968, 3178, 3232, 3271, 3504 |
| MlsI | TGGCCA | 1 cut(s) | 3337 |
| MluNI | TGGCCA | 1 cut(s) | 3337 |
| MlyI | GAGTC | 3 cut(s) | 542, 650, 1835 |
| MmeI | TCCRAC | 8 cut(s) | 483, 1290, 1391, 1902, 1921, 2162, 2360, 3206 |
| Mox20I | TGGCCA | 1 cut(s) | 3337 |
| Mph1103I | ATGCAT | 2 cut(s) | 1356, 3126 |
| MroNI | GCCGGC | 1 cut(s) | 2785 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2685 |
| MscI | TGGCCA | 1 cut(s) | 3337 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1359, 1589, 2397, 3456 |
| Msp20I | TGGCCA | 1 cut(s) | 3337 |
| MspA1I | CMGCKG | 4 cut(s) | 557, 899, 3302, 3659 |
| MspCI | CTTAAG | 2 cut(s) | 1376, 2159 |
| MspI | CCGG | 9 cut(s) | 266, 288, 413, 423, 691, 826, 2371, 2786, 3040 |
| MspR9I | CCNGG | 8 cut(s) | 266, 267, 302, 2025, 2256, 2372, 3078, 3783 |
| MunI | CAATTG | 3 cut(s) | 19, 37, 1752 |
| MvaI | CCWGG | 5 cut(s) | 302, 2025, 2256, 3078, 3783 |
| MvnI | CGCG | 1 cut(s) | 276 |
| NaeI | GCCGGC | 1 cut(s) | 2787 |
| NciI | CCSGG | 3 cut(s) | 266, 267, 2372 |
| NdeI | CATATG | 1 cut(s) | 3051 |
| NgoMIV | GCCGGC | 1 cut(s) | 2785 |
| NheI | GCTAGC | 2 cut(s) | 1595, 2570 |
| NlaIV | GGNNCC | 8 cut(s) | 16, 286, 1964, 2076, 2376, 2682, 3234, 3258 |
| NmeAIII | GCCGAG | 1 cut(s) | 688 |
| NsiI | ATGCAT | 2 cut(s) | 1356, 3126 |
| PacI | TTAATTAA | 1 cut(s) | 1956 |
| PagI | TCATGA | 2 cut(s) | 1207, 3439 |
| PaqCI | CACCTGC | 2 cut(s) | 2062, 2272 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2789 |
| PdiI | GCCGGC | 1 cut(s) | 2787 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2685 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1972 |
| PfoI | TCCNGGA | 1 cut(s) | 2370 |
| Ple19I | CGATCG | 1 cut(s) | 398 |
| PleI | GAGTC | 3 cut(s) | 541, 649, 1834 |
| PmaCI | CACGTG | 1 cut(s) | 2793 |
| PmlI | CACGTG | 1 cut(s) | 2793 |
| PpsI | GAGTC | 3 cut(s) | 541, 649, 1834 |
| Ppu21I | YACGTR | 1 cut(s) | 2793 |
| PpuMI | RGGWCCY | 1 cut(s) | 3416 |
| PshBI | ATTAAT | 4 cut(s) | 1002, 2007, 2081, 2490 |
| Psp124BI | GAGCTC | 2 cut(s) | 345, 2243 |
| Psp5II | RGGWCCY | 1 cut(s) | 3416 |
| Psp6I | CCWGG | 5 cut(s) | 300, 2023, 2254, 3076, 3781 |
| PspCI | CACGTG | 1 cut(s) | 2793 |
| PspEI | GGTNACC | 1 cut(s) | 3703 |
| PspFI | CCCAGC | 1 cut(s) | 3786 |
| PspGI | CCWGG | 5 cut(s) | 300, 2023, 2254, 3076, 3781 |
| PspN4I | GGNNCC | 8 cut(s) | 16, 286, 1964, 2076, 2376, 2682, 3234, 3258 |
| PspPI | GGNCC | 9 cut(s) | 285, 1327, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| PspPPI | RGGWCCY | 1 cut(s) | 3416 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1089, 1121 |
| PstI | CTGCAG | 1 cut(s) | 2767 |
| PstNI | CAGNNNCTG | 4 cut(s) | 560, 1640, 2549, 2561 |
| PsuI | RGATCY | 8 cut(s) | 14, 2374, 2923, 2968, 3178, 3232, 3271, 3504 |
| PvuI | CGATCG | 1 cut(s) | 398 |
| PvuII | CAGCTG | 3 cut(s) | 557, 3302, 3659 |
| RsaI | GTAC | 5 cut(s) | 786, 976, 2029, 2451, 2658 |
| RsaNI | GTAC | 5 cut(s) | 785, 975, 2028, 2450, 2657 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1359, 1589, 2397, 3456 |
| SacI | GAGCTC | 2 cut(s) | 345, 2243 |
| Sau96I | GGNCC | 9 cut(s) | 285, 1327, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| SchI | GAGTC | 3 cut(s) | 542, 650, 1835 |
| ScrFI | CCNGG | 8 cut(s) | 266, 267, 302, 2025, 2256, 2372, 3078, 3783 |
| SfaNI | GCATC | 8 cut(s) | 214, 234, 2636, 2818, 3111, 3133, 3479, 3787 |
| SfcI | CTRYAG | 3 cut(s) | 2550, 2763, 3156 |
| SinI | GGWCC | 8 cut(s) | 285, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| SmaI | CCCGGG | 1 cut(s) | 267 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1359, 1589, 2397, 3456 |
| SmlI | CTYRAG | 4 cut(s) | 1376, 1801, 2159, 2242 |
| SmoI | CTYRAG | 4 cut(s) | 1376, 1801, 2159, 2242 |
| SspI | AATATT | 3 cut(s) | 2446, 2599, 3550 |
| SstI | GAGCTC | 2 cut(s) | 345, 2243 |
| StyD4I | CCNGG | 8 cut(s) | 264, 265, 300, 2023, 2254, 2370, 3076, 3781 |
| StyI | CCWWGG | 2 cut(s) | 61, 1694 |
| TaiI | ACGT | 1 cut(s) | 2795 |
| TaqI | TCGA | 5 cut(s) | 51, 134, 377, 812, 2034 |
| TauI | GCSGC | 2 cut(s) | 279, 3076 |
| TscAI | CASTG | 8 cut(s) | 147, 160, 469, 784, 1881, 2053, 2550, 2979 |
| TspDTI | ATGAA | 9 cut(s) | 590, 1097, 1227, 1377, 2378, 2445, 2997, 3468, 3546 |
| TspGWI | ACGGA | 2 cut(s) | 2354, 2693 |
| TspMI | CCCGGG | 1 cut(s) | 265 |
| TspRI | CASTG | 8 cut(s) | 147, 160, 469, 784, 1881, 2053, 2550, 2979 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1972 |
| Vha464I | CTTAAG | 2 cut(s) | 1376, 2159 |
| VneI | GTGCAC | 1 cut(s) | 3679 |
| VpaK11BI | GGWCC | 8 cut(s) | 285, 1613, 1841, 1943, 2725, 2771, 3063, 3416 |
| VspI | ATTAAT | 4 cut(s) | 1002, 2007, 2081, 2490 |
| XapI | RAATTY | 6 cut(s) | 123, 1414, 2985, 3088, 3352, 3721 |
| XbaI | TCTAGA | 2 cut(s) | 2926, 3215 |
| XmaI | CCCGGG | 1 cut(s) | 265 |
| XmaJI | CCTAGG | 2 cut(s) | 61, 1694 |
| XmiI | GTMKAC | 2 cut(s) | 746, 3374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2685 |
| Zsp2I | ATGCAT | 2 cut(s) | 1356, 3126 |