Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Forward (+)

9420604 .. 9424169

Gene Structure 3566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1128700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGGTCGCTGGTGGATTTGGGTGGAACAATTTCGAGGAAACCCTAGAGGGTGGTGTGATGGGGAAAGATGATGAAAGTGCGAAAGTGGTGGAGGATGTAGAAGAAGGTGAAATTTCCGATTCGAATTCAGTGGAGGAGATCAGTGAGGAAGATTTTGTCAAGCAGGAGAAGCAGCAGGAAGTTAAGGTGGTGGTTCCGCCGCCGCCGCCCAAGGATCAATCTAAATCCAACGGCGGAGATGATGCCAGGGTTTGGACGATGCGCGACATGTACAACCACCCGGGACTTCGGGGGTACAGGTCCGGCTTGGTTAGCCTCGCTTGGGCTCAGGCCGTACAGAATAAGCCGCTCAATCAGAAGCCACTCAATCAGTTTCTGCAGATGAATGTTGATCCCGACGAGAAATTGAAGCGATCGTCATCGTCGCCGTCGGTGAATTCGCCTGAAAGGAGCAATGCGAAGGAAGTGGATGGAGTGGTGATTGTTGACAGTGGCGATGAAATGGATGCTGAGAAGGAGGAAGGGGAGTTGGAGGAGGGTGAGATTGATTTGGATTCGGAGGCTTCTGCTGACGAAAAGGCCGCCGCGGGTGTGGCTGACGAAGCTGGAGATGGTGTTTTGGATTGTGATAATATGAACCTTGATAATCCAGAGACAGGCTTGAAGAATGAGGAGCTGGAGAAGCGAGTGAGCTTGATTCGGAAAGCTTTGGCAAGTGTTACTAGAAATGAAGCAGAGAAATCATTTGTGGATGTTTGTCTCCAGTTACTCAACACTTTGGTGAGCTTGCGTGGGGTGCTTTCGGAAACTAATGTTTCCACAAAGGAAGCTCTTGTTCATCTGTCCTTCACTGCGGTACAAGCTATCAGCTCTGTGTTCTGCTCCATGAGACCAGTCCAAAAGGAACAGAACAAAGATATTATATCAAGGTTACTTTCTTCTGTGAAGAATGATCCTCCTCTTTTTACCCCTGAGCAGATCAAAGAGATAGGGGTCTTGACATCCTTTGTGGATTCCCCTGATGTTTTTCTTCAAACTAAAGCAGGCATTAAAGATGATGAGATACAGGTTATCGGGTTTAATAATAAGAATTCTGACGCTTCAGCTGTAAATGCGACTTCTTCAGCTAACTACAGCAATCCAATTATGTTGTCCGAAGTTCCAAGACCAGGAGTGTCTAGTTTGAAGGGTAGACGGGTTGTGCTTCCCCTGTTAGACACTCACAAGGATCATGATGCAGATAGCCTTCCTTCCCCAACACGAGAATCCCCATCATGTTTTCCTGTTCAGAACACATTGGTTTTTACTGATAGGATGGTAAAACCAGAGCCTGATACCTCTAGGGCGCCAAATGCAGAAGGTTCTGGATTGCATCCTTATGATACTGATGCCCTTAAAGCTGTATCTACTTATCAACATATTAACCGGAGCTCTTTTTTCATGAGTGAAAGACTTCCAAGTCCAACCCCTTCAGAAGATGGTGATAAAGGGGATGCTGATACTGTGGGAGAGGTTTCTAGTTCTTCTTCTGCTAGTAATTTGAGAACTTCAGGTCCTCCTATTTTGGGACAGCAAGTTGTTTCTCCCTTCCCTATCCCTGTGGGTAGCTCCAGCATGCAAGAACGATTTACAGGTAAAAGTGCTGCCCCTGCGAGTTCTGGGTCTAAAATCACCATAAAAGCTCCAACTAGGAATAGAGATCCTAGGCTTCGGTTTTCCAATTCTGATGTGGGTGTCTTGAATCATAACCCACAACCCTTGACGGTGCATAGTGCACCTAAAATAGATTCGGTTATAACATTAAGCTCGAGAAAGCAAAAACCCCTTGAGGATTCAAAATTAGATGGTCCTGCATTAAAGAGGCAAAGGAATACATTGGGAAACTCGGGTTTTGTTAAAGATCCAAAAACCGCTTCTGGAAGTTGTGGCTGGTTGGAGGACATTGGTGGCGTTGGACCTCATTTAATTAGCAATAATCAGACAGTGGAGAACACACAGTCTGATCCCAGAAAAGTGGTTAATGTTGTAAGTAGTCCTAGTACTGTTGATGGAAACTCAAATGGCCCAAACAGTTCAAATGAGCATGTGTCATTGACGGATTTAAGCACGGCTTCCTTGCCTGCATTATTAAAGGCTGTGAATCCAACCATGCTGTTAAACATACTTAAGCTGGGACAGCAGCAAAGGTTAGCTGCAGAAGCCCAGCCGAAGTCTGCTTATCCTGAAAAAAGTATGACACATCCTATAAGCTCAAATTCAATACCAGGGTCAGATGCATCAGTGAATGTTCCTTCAAAGACCACAGCAATGTTGCAGACACTTCCTGTTAGTTCACAAAAAGCTCTGATGGATGAGTCAGGGAAAGTCTGTATGAAACCCCGCGACCCTCGCCGTATTCTCCATGGTAATGCACTTCAAAAGAGTAGGAGTTTGGGACAAGAGCAGTTCAGAAATATTGTAACCCCACTGCCGAGCAGCCAGGGGAATAAGGATAATCTTACTGGCGAAAAGCAAGATGGTCAGTCAGATATGAAGCTAGTCACTTCTCAATCAGTAGAGGCCCCTGACATTGCTCGCCAATTCACAAAGAAGAATCTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

868

Amino Acids

93.42

Weight (kDa)

5.13

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_CPL3	PF25505	230 - 348	9.9e-43	CPL3 ARM repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1796
AasI	GACNNNNNNGTC	1 cut(s)	1458
AccB1I	GGYRCC	1 cut(s)	1345
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	1192
AccII	CGCG	3 cut(s)	264, 587, 2382
AclWI	GGATC	7 cut(s)	222, 386, 947, 1236, 1694, 1895, 1997
AcsI	RAATTY	5 cut(s)	111, 124, 436, 1090, 2254
AcuI	CTGAAG	4 cut(s)	1086, 1107, 1455, 1533
AcyI	GRCGYC	1 cut(s)	1346
AfaI	GTAC	5 cut(s)	272, 296, 336, 858, 2041
AfiI	CCNNNNNNNGG	5 cut(s)	252, 322, 656, 1169, 1565
AflII	CTTAAG	1 cut(s)	2165
AflIII	ACRYGT	1 cut(s)	267
AjnI	CCWGG	4 cut(s)	245, 1168, 2263, 2478
AjuI	GAANNNNNNNTTGG	2 cut(s)	1897, 1929
AleI	CACNNNNGTG	1 cut(s)	779
AloI	GAACNNNNNNTCC	2 cut(s)	1537, 1569
Alw21I	GWGCWC	2 cut(s)	1433, 1777
Alw26I	GTCTC	3 cut(s)	647, 764, 883
Alw44I	GTGCAC	1 cut(s)	1773
AlwI	GGATC	7 cut(s)	222, 386, 947, 1236, 1694, 1895, 1997
AlwNI	CAGNNNCTG	2 cut(s)	376, 1331
Ama87I	CYCGRG	3 cut(s)	280, 1807, 1885
AoxI	GGCC	4 cut(s)	330, 579, 2062, 2559
ApaLI	GTGCAC	1 cut(s)	1773
ApeKI	GCWGC	5 cut(s)	172, 1643, 2179, 2192, 2475
ApoI	RAATTY	5 cut(s)	111, 124, 436, 1090, 2254
Asp700I	GAANNNNTTC	2 cut(s)	29, 1452
AspA2I	CCTAGG	1 cut(s)	1703
AspLEI	GCGC	2 cut(s)	264, 1348
AspS9I	GGNCC	6 cut(s)	300, 1553, 1847, 1955, 2063, 2560
AsuC2I	CCSGG	2 cut(s)	281, 282
AsuHPI	GGTGA	7 cut(s)	119, 445, 490, 551, 793, 1493, 1663
AsuII	TTCGAA	1 cut(s)	122
AvaI	CYCGRG	3 cut(s)	280, 1807, 1885
AvaII	GGWCC	4 cut(s)	300, 1553, 1847, 1955
AvrII	CCTAGG	1 cut(s)	1703
BaeGI	GKGCMC	1 cut(s)	1777
BanI	GGYRCC	1 cut(s)	1345
BanII	GRGCYC	2 cut(s)	328, 1433
BauI	CACGAG	1 cut(s)	1260
Bbv12I	GWGCWC	2 cut(s)	1433, 1777
BbvI	GCAGC	5 cut(s)	184, 1630, 2179, 2191, 2487
BceAI	ACGGC	5 cut(s)	247, 317, 412, 2124, 2376
BciT130I	CCWGG	4 cut(s)	247, 1170, 2265, 2480
BcnI	CCSGG	2 cut(s)	281, 282
BcoDI	GTCTC	3 cut(s)	647, 764, 883
BfmI	CTRYAG	3 cut(s)	377, 1132, 2193
BfoI	RGCGCY	1 cut(s)	1349
BfrI	CTTAAG	1 cut(s)	2165
BlnI	CCTAGG	1 cut(s)	1703
BmcAI	AGTACT	1 cut(s)	2041
Bme1390I	CCNGG	6 cut(s)	247, 281, 282, 1170, 2265, 2480
Bme18I	GGWCC	4 cut(s)	300, 1553, 1847, 1955
BmeT110I	CYCGRG	3 cut(s)	280, 1807, 1885
BmgT120I	GGNCC	6 cut(s)	300, 1553, 1847, 1955, 2063, 2560
BmiI	GGNNCC	3 cut(s)	195, 1347, 2562
BmrFI	CCNGG	6 cut(s)	247, 281, 282, 1170, 2265, 2480
BmsI	GCATC	9 cut(s)	232, 249, 496, 1225, 1378, 1381, 1483, 2263, 2285
BpmI	CTGGAG	4 cut(s)	627, 698, 746, 1594
Bpu10I	CCTNAGC	2 cut(s)	327, 972
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	1847
BpuMI	CCSGG	2 cut(s)	281, 282
BsaBI	GATNNNNATC	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	1346
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	8 cut(s)	210, 246, 280, 585, 1703, 2264, 2401, 2479
BsaWI	WCCGGW	1 cut(s)	1425
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	252, 322, 656, 1169, 1565
Bse1I	ACTGG	3 cut(s)	763, 893, 2506
Bse3DI	GCAATG	3 cut(s)	460, 2313, 2568
Bse8I	GATNNNNATC	1 cut(s)	418
BseBI	CCWGG	4 cut(s)	247, 1170, 2265, 2480
BseDI	CCNNGG	8 cut(s)	210, 246, 280, 585, 1703, 2264, 2401, 2479
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	5 cut(s)	252, 322, 656, 1169, 1565
BseMI	GCAATG	3 cut(s)	460, 2313, 2568
BseMII	CTCAG	3 cut(s)	341, 501, 963
BseNI	ACTGG	3 cut(s)	763, 893, 2506
BseRI	GAGGAG	4 cut(s)	149, 548, 686, 948
BseSI	GKGCMC	1 cut(s)	1777
BseXI	GCAGC	5 cut(s)	184, 1630, 2179, 2191, 2487
BseYI	CCCAGC	2 cut(s)	2170, 2202
Bsh1236I	CGCG	3 cut(s)	264, 587, 2382
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	4 cut(s)	332, 581, 2064, 2561
BshNI	GGYRCC	1 cut(s)	1345
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	1433, 1777
BsiHKCI	CYCGRG	3 cut(s)	280, 1807, 1885
BsiSI	CCGG	3 cut(s)	281, 303, 1426
BslFI	GGGAC	4 cut(s)	297, 1581, 2187, 2448
BslI	CCNNNNNNNGG	5 cut(s)	252, 322, 656, 1169, 1565
BsmAI	GTCTC	3 cut(s)	647, 764, 883
BsmFI	GGGAC	4 cut(s)	297, 1581, 2187, 2448
BsnI	GGCC	4 cut(s)	332, 581, 2064, 2561
Bso31I	GGTCTC	1 cut(s)	883
BsoBI	CYCGRG	3 cut(s)	280, 1807, 1885
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	3 cut(s)	328, 1433, 1777
Bsp1407I	TGTACA	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	2401
BspANI	GGCC	4 cut(s)	332, 581, 2064, 2561
BspCNI	CTCAG	3 cut(s)	340, 502, 964
BspFNI	CGCG	3 cut(s)	264, 587, 2382
BspHI	TCATGA	2 cut(s)	1231, 1440
BspLI	GGNNCC	3 cut(s)	195, 1347, 2562
BspMAI	CTGCAG	2 cut(s)	381, 2197
BspPI	GGATC	7 cut(s)	222, 386, 947, 1236, 1694, 1895, 1997
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	1345
BspTI	CTTAAG	1 cut(s)	2165
BspTNI	GGTCTC	1 cut(s)	883
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	3 cut(s)	460, 2313, 2568
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	763, 893, 2506
BssECI	CCNNGG	8 cut(s)	210, 246, 280, 585, 1703, 2264, 2401, 2479
BssNI	GRCGYC	1 cut(s)	1346
BssSI	CACGAG	1 cut(s)	1260
BssT1I	CCWWGG	3 cut(s)	210, 1703, 2401
Bst2BI	CACGAG	1 cut(s)	1260
Bst2UI	CCWGG	4 cut(s)	247, 1170, 2265, 2480
Bst4CI	ACNGT	7 cut(s)	491, 1504, 1765, 1984, 1998, 2044, 2072
BstACI	GRCGYC	1 cut(s)	1346
BstAFI	CTTAAG	1 cut(s)	2165
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	788, 1045, 1616, 2121, 2575
BstDEI	CTNAG	3 cut(s)	327, 510, 972
BstDSI	CCRYGG	2 cut(s)	585, 2401
BstFNI	CGCG	3 cut(s)	264, 587, 2382
BstH2I	RGCGCY	1 cut(s)	1349
BstHHI	GCGC	2 cut(s)	264, 1348
BstMAI	GTCTC	3 cut(s)	647, 764, 883
BstMCI	CGRYCG	1 cut(s)	416
BstNI	CCWGG	4 cut(s)	247, 1170, 2265, 2480
BstNSI	RCATGY	3 cut(s)	271, 1618, 2087
BstSCI	CCNGG	6 cut(s)	245, 279, 280, 1168, 2263, 2478
BstSFI	CTRYAG	3 cut(s)	377, 1132, 2193
BstSLI	GKGCMC	1 cut(s)	1777
BstUI	CGCG	3 cut(s)	264, 587, 2382
BstV1I	GCAGC	5 cut(s)	184, 1630, 2179, 2191, 2487
BstX2I	RGATCY	2 cut(s)	1699, 1900
BstXI	CCANNNNNNTGG	1 cut(s)	2014
BstYI	RGATCY	2 cut(s)	1699, 1900
BsuRI	GGCC	4 cut(s)	332, 581, 2064, 2561
BtgI	CCRYGG	2 cut(s)	585, 2401
BtgZI	GCGATG	1 cut(s)	510
BtsI	GCAGTG	2 cut(s)	849, 2465
BtsIMutI	CAGTG	7 cut(s)	135, 148, 496, 849, 1989, 2286, 2465
Cac8I	GCNNGC	5 cut(s)	788, 1045, 1616, 2121, 2575
CaiI	CAGNNNCTG	2 cut(s)	376, 1331
CciI	TCATGA	2 cut(s)	1231, 1440
CfoI	GCGC	2 cut(s)	264, 1348
Cfr13I	GGNCC	6 cut(s)	300, 1553, 1847, 1955, 2063, 2560
Cfr42I	CCGCGG	1 cut(s)	588
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	1106
Csp6I	GTAC	5 cut(s)	271, 295, 335, 857, 2040
CspCI	CAANNNNNGTGG	2 cut(s)	1740, 1775
CviAII	CATG	9 cut(s)	268, 886, 1232, 1275, 1441, 1615, 2084, 2149, 2402
CviQI	GTAC	5 cut(s)	271, 295, 335, 857, 2040
DdeI	CTNAG	3 cut(s)	327, 510, 972
DinI	GGCGCC	1 cut(s)	1347
DrdI	GACNNNNNNGTC	1 cut(s)	1458
DseDI	GACNNNNNNGTC	1 cut(s)	1458
EciI	GGCGGA	2 cut(s)	186, 249
Ecl136II	GAGCTC	1 cut(s)	1431
Eco130I	CCWWGG	3 cut(s)	210, 1703, 2401
Eco24I	GRGCYC	2 cut(s)	328, 1433
Eco31I	GGTCTC	1 cut(s)	883
Eco47I	GGWCC	4 cut(s)	300, 1553, 1847, 1955
Eco53kI	GAGCTC	1 cut(s)	1431
Eco57I	CTGAAG	4 cut(s)	1086, 1107, 1455, 1533
Eco88I	CYCGRG	3 cut(s)	280, 1807, 1885
EcoICRI	GAGCTC	1 cut(s)	1431
EcoO109I	RGGNCCY	2 cut(s)	1553, 2560
EcoRI	GAATTC	3 cut(s)	124, 436, 1090
EcoRII	CCWGG	4 cut(s)	245, 1168, 2263, 2478
EcoT14I	CCWWGG	3 cut(s)	210, 1703, 2401
EcoT22I	ATGCAT	1 cut(s)	2278
EcoT38I	GRGCYC	2 cut(s)	328, 1433
EgeI	GGCGCC	1 cut(s)	1347
EheI	GGCGCC	1 cut(s)	1347
ErhI	CCWWGG	3 cut(s)	210, 1703, 2401
FaeI	CATG	9 cut(s)	271, 889, 1235, 1278, 1444, 1618, 2087, 2152, 2405
FalI	AAGNNNNNCTT	2 cut(s)	2095, 2127
FaqI	GGGAC	4 cut(s)	297, 1581, 2187, 2448
FatI	CATG	9 cut(s)	267, 885, 1231, 1274, 1440, 1614, 2083, 2148, 2401
FauI	CCCGC	2 cut(s)	580, 2387
FblI	GTMKAC	1 cut(s)	1192
FriOI	GRGCYC	2 cut(s)	328, 1433
GlaI	GCGC	2 cut(s)	263, 1347
GsaI	CCCAGC	2 cut(s)	2174, 2206
GsuI	CTGGAG	4 cut(s)	627, 698, 746, 1594
HaeII	RGCGCY	1 cut(s)	1349
HaeIII	GGCC	4 cut(s)	332, 581, 2064, 2561
HapII	CCGG	3 cut(s)	281, 303, 1426
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	2 cut(s)	264, 1348
Hin1I	GRCGYC	1 cut(s)	1346
Hin1II	CATG	9 cut(s)	271, 889, 1235, 1278, 1444, 1618, 2087, 2152, 2405
Hin6I	GCGC	2 cut(s)	262, 1346
HinP1I	GCGC	2 cut(s)	262, 1346
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	705
HpaII	CCGG	3 cut(s)	281, 303, 1426
HphI	GGTGA	7 cut(s)	119, 445, 490, 551, 793, 1493, 1663
Hpy166II	GTNNAC	4 cut(s)	487, 1193, 1775, 2333
Hpy8I	GTNNAC	4 cut(s)	487, 1193, 1775, 2333
Hpy99I	CGWCG	3 cut(s)	401, 427, 433
HpyCH4III	ACNGT	7 cut(s)	491, 1504, 1765, 1984, 1998, 2044, 2072
HpyF3I	CTNAG	3 cut(s)	327, 510, 972
Hsp92I	GRCGYC	1 cut(s)	1346
Hsp92II	CATG	9 cut(s)	271, 889, 1235, 1278, 1444, 1618, 2087, 2152, 2405
HspAI	GCGC	2 cut(s)	262, 1346
KasI	GGCGCC	1 cut(s)	1345
KspI	CCGCGG	1 cut(s)	588
LmnI	GCTCC	6 cut(s)	450, 673, 887, 1428, 1613, 1687
Lsp1109I	GCAGC	5 cut(s)	184, 1630, 2179, 2191, 2487
LweI	GCATC	9 cut(s)	232, 249, 496, 1225, 1378, 1381, 1483, 2263, 2285
MaeIII	GTNAC	5 cut(s)	718, 765, 930, 2458, 2539
MbiI	CCGCTC	1 cut(s)	349
MflI	RGATCY	2 cut(s)	1699, 1900
MhlI	GDGCHC	3 cut(s)	328, 1433, 1777
Mly113I	GGCGCC	1 cut(s)	1346
MlyI	GAGTC	1 cut(s)	2363
MmeI	TCCRAC	7 cut(s)	252, 510, 1487, 1709, 1914, 1933, 2168
Mph1103I	ATGCAT	1 cut(s)	2278
MroXI	GAANNNNTTC	2 cut(s)	29, 1452
MslI	CAYNNNNRTG	4 cut(s)	779, 1377, 2306, 2406
MspA1I	CMGCKG	2 cut(s)	587, 1106
MspCI	CTTAAG	1 cut(s)	2165
MspI	CCGG	3 cut(s)	281, 303, 1426
MspR9I	CCNGG	6 cut(s)	247, 281, 282, 1170, 2265, 2480
MvaI	CCWGG	4 cut(s)	247, 1170, 2265, 2480
MvnI	CGCG	3 cut(s)	264, 587, 2382
NarI	GGCGCC	1 cut(s)	1346
NciI	CCSGG	2 cut(s)	281, 282
NcoI	CCATGG	1 cut(s)	2401
NlaIII	CATG	9 cut(s)	271, 889, 1235, 1278, 1444, 1618, 2087, 2152, 2405
NlaIV	GGNNCC	3 cut(s)	195, 1347, 2562
NmeAIII	GCCGAG	1 cut(s)	2496
NmuCI	GTSAC	1 cut(s)	2539
NsiI	ATGCAT	1 cut(s)	2278
NspI	RCATGY	3 cut(s)	271, 1618, 2087
NspV	TTCGAA	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	779
PaeI	GCATGC	1 cut(s)	1618
PaeR7I	CTCGAG	1 cut(s)	1807
PagI	TCATGA	2 cut(s)	1231, 1440
PciI	ACATGT	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	29, 1452
PflMI	CCANNNNNTGG	1 cut(s)	252
Ple19I	CGATCG	1 cut(s)	416
PleI	GAGTC	1 cut(s)	2362
PluTI	GGCGCC	1 cut(s)	1349
PpsI	GAGTC	1 cut(s)	2362
PpuMI	RGGWCCY	1 cut(s)	1553
PscI	ACATGT	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	1796
Psp124BI	GAGCTC	1 cut(s)	1433
Psp5II	RGGWCCY	1 cut(s)	1553
Psp6I	CCWGG	4 cut(s)	245, 1168, 2263, 2478
PspFI	CCCAGC	2 cut(s)	2170, 2202
PspGI	CCWGG	4 cut(s)	245, 1168, 2263, 2478
PspN4I	GGNNCC	3 cut(s)	195, 1347, 2562
PspPI	GGNCC	6 cut(s)	300, 1553, 1847, 1955, 2063, 2560
PspPPI	RGGWCCY	1 cut(s)	1553
PstI	CTGCAG	2 cut(s)	381, 2197
PstNI	CAGNNNCTG	2 cut(s)	376, 1331
PsuI	RGATCY	2 cut(s)	1699, 1900
PvuI	CGATCG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	1106
RsaI	GTAC	5 cut(s)	272, 296, 336, 858, 2041
RsaNI	GTAC	5 cut(s)	271, 295, 335, 857, 2040
RseI	CAYNNNNRTG	4 cut(s)	779, 1377, 2306, 2406
SacI	GAGCTC	1 cut(s)	1433
SacII	CCGCGG	1 cut(s)	588
Sau96I	GGNCC	6 cut(s)	300, 1553, 1847, 1955, 2063, 2560
ScaI	AGTACT	1 cut(s)	2041
SchI	GAGTC	1 cut(s)	2363
ScrFI	CCNGG	6 cut(s)	247, 281, 282, 1170, 2265, 2480
SduI	GDGCHC	3 cut(s)	328, 1433, 1777
SfaNI	GCATC	9 cut(s)	232, 249, 496, 1225, 1378, 1381, 1483, 2263, 2285
SfcI	CTRYAG	3 cut(s)	377, 1132, 2193
SfoI	GGCGCC	1 cut(s)	1347
Sfr274I	CTCGAG	1 cut(s)	1807
Sfr303I	CCGCGG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	122
SgrBI	CCGCGG	1 cut(s)	588
SinI	GGWCC	4 cut(s)	300, 1553, 1847, 1955
SlaI	CTCGAG	1 cut(s)	1807
SmaI	CCCGGG	1 cut(s)	282
SmiMI	CAYNNNNRTG	4 cut(s)	779, 1377, 2306, 2406
SmlI	CTYRAG	3 cut(s)	1807, 1826, 2165
SmoI	CTYRAG	3 cut(s)	1807, 1826, 2165
SphI	GCATGC	1 cut(s)	1618
SspDI	GGCGCC	1 cut(s)	1345
SspI	AATATT	1 cut(s)	2455
SstI	GAGCTC	1 cut(s)	1433
StyD4I	CCNGG	6 cut(s)	245, 279, 280, 1168, 2263, 2478
StyI	CCWWGG	3 cut(s)	210, 1703, 2401
TaaI	ACNGT	7 cut(s)	491, 1504, 1765, 1984, 1998, 2044, 2072
TaqI	TCGA	3 cut(s)	33, 122, 1808
TatI	WGTACW	2 cut(s)	270, 2039
TauI	GCSGC	6 cut(s)	202, 205, 208, 349, 584, 587
TscAI	CASTG	7 cut(s)	135, 148, 496, 856, 1989, 2286, 2472
TseFI	GTSAC	1 cut(s)	2539
TseI	GCWGC	5 cut(s)	172, 1643, 2179, 2192, 2475
Tsp45I	GTSAC	1 cut(s)	2539
TspDTI	ATGAA	9 cut(s)	87, 398, 513, 650, 744, 827, 1429, 2387, 2546
TspGWI	ACGGA	1 cut(s)	2111
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	7 cut(s)	135, 148, 496, 856, 1989, 2286, 2472
Van91I	CCANNNNNTGG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	2165
VneI	GTGCAC	1 cut(s)	1773
VpaK11BI	GGWCC	4 cut(s)	300, 1553, 1847, 1955
XapI	RAATTY	5 cut(s)	111, 124, 436, 1090, 2254
XceI	RCATGY	3 cut(s)	271, 1618, 2087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1726
XhoI	CTCGAG	1 cut(s)	1807
XmaI	CCCGGG	1 cut(s)	280
XmaJI	CCTAGG	1 cut(s)	1703
XmiI	GTMKAC	1 cut(s)	1192
XmnI	GAANNNNTTC	2 cut(s)	29, 1452
ZrmI	AGTACT	1 cut(s)	2041
Zsp2I	ATGCAT	1 cut(s)	2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.