Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Reverse (-)

51012727 .. 51017892

Gene Structure 5166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3894 bp

ATGGTCGTTGGTGGATCCAATTGTATTGGGTGGAACAATTGCATAGAAATCGAAGAAACCCTAGGGGGTGTGATGGGCAAGGATGAGAGTAGCAAAGAGGTCGGGGATGTTGAAGAAGGTGAAATTTCCGATTCGACTTCAGTGGAGGAGATCAGTGAGGAGGATTTTGTTAAGCAGGAATTGAAGGTTGAGCCCAAATCCAATGGCGGAGGAGGAGGAGATGCTGGTAGGGTTTGGACGATGCGGGACATCTACAACTACCCGGGGTTTCGCGGCTACGGGTCCGGTCTCGTTAACCTGGCTTGGGCTCAGGCCGTGCAGAATAAACCTCTCAATGAGCTCTTTGTGATGGATGTTGATTCCGAAGAGAAATCGAAGCAGCAGCAGCAGCAGCGATCGTCGTCTTCGCTGCCGGTGAGTTCCGGCAATGCGAAGGGGGAGGAGAGAGTGGTGATTATTGACAGTGGTGATGAGATGGATGTTGAGAAGGAGGACGGGGAGTTGGAGGAGGGGGAGATTGATTTGGATTCGGAGTCTGCCGATAACGAAAAGGCAGCTGCTGCTGCTGCTGGTGCTGATATGAATGTTGATAGTTCAGAGGGTGGTGTGAAGGAGAAGCGAGTGAACTTGCTAAGGGAAGCATTGGAGTCTCTGACTATTACTGAGGCCGAGAAATCATTTAGAGATGTATGTCTCCGGTTTCTTGGCAGTTTGGAAAGCTTGCGAGGAGTGCTTTCGGATATAAGTGTGTCTACTAAAGAAGCTCTTGTTCAGCAGTTGTTCACTGCCGTACAAGCTATTAGCTCGGTTTTCTGCTCGATGAGCCCTGACCGGAAGGAGCAGAATAAAGATGTTCTAGCAAGGATACTTTCTTCTTCAAAGAGTGATCATTCTCCTTTTTCCGCTGAGCAGCTAAAAGAGATAGAGGTGATGATATCCTCTATGGAATCCCCTGCTGTTTTCCCTCAAACTAAAGCAGGTACTCAGGGCAACGAGATACAGTCTATTAATGGGGTTAACAATATGGATTCAGATACTTCAGTTGCAAATGCCAGTCATGTGTTCACTTATTCAGCTAATAATGCTTCAGATTTTGCACCTGTATCTGTGGTTCATAGCAATCCTAATATATCATCCGAAGTTCCAAGATCAGGAACATCTAGTTTTAAGGGTAGAGGACTCATGCTACCCCTTTTAGACCTTCACATGGATCATGATGAAGATAGCCTTCCATCTCCTACACGAGAACCGCCAGCAGGTTTTCCTGTCCAGAAACTATCGGTTGTTGCTGATGGGATGGTAAGAAAATCAGGGTTGGAGACAACTCGGGTGGCCCTAGATGTAGAAGGTTCAAAAATGCATGGTTATGAAACTGAGGCTCTTAAGGCTGTTTCTAGCTATCAACAAAAGTTTAGTCGGAATTCTTTTTTGACGAGTGAACTTCCAAGCCCAACCCCTTCAGAAGAGGGTGATAGTGGGGATGATGATACGATTGGGGAGGTTTCTAGTTCTTCTGCGCCTAGTAATGTGAGAACTTCCCGTCCCCCCATTTTGGGTCGTCAAGTTGTTTCTTCTCCTCCTCCTCCTACCATCGTCATGGCTAGCTCTGACTTGCAAGGACCAATTACTGCAAAAAGTGCTGCCTCTGTGAGTTTGGTGTCTAATATGCCTGTTAAATCTACAGCTAAGAGTAGAGACCCTAGGCTTCGATTTGCCAATTCTGATGTTGGTGCTTTGACCCTTAACCAACAATCCTCAATTGCGGTGCATAATGCACCTAAAGTGGATTCTGTTATCACAGTAAGCTCAAGAAAGCATAAATCCCCTGAGGAGTCTAATTTTGATGGTCCTGAATCAAAAAGACAAAGGGGTGCAAACTCAGTGGTTGGTAGGGGTGCAAAAACTTCTTTCGGAAGTGGTGGCTGGTTGGAGGACATAAGTAGTGTTGGACCTCATTTAATTAACAGGAACCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAGTGAATAATTTTTTAAGTTCTCCTGGTACCCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAGTGATTAATTTTTCAAGTTCTCCTGGTACTGTCGAAGGCAACGCCAGTGCCCAAAATACTGCAAATGAGCAGGTGCCATTAATGGCTGCAAGCTCAGCTTCCCTGCCTGCATTATTGAAAGATATTGCTGTGAATCCGACCATGTTGATTAACATACTTAACTCAGCAGAGGCTGCTGTGCCGGCAGAAAGTATGACATATCCTCCGAGCTCAAGTTCAATACCTGGAGCACCTGCATTGGTGAATGATCCTTCAAAGATATCTGGAGCTTTGCTGACACCAACCATTAGTTCACAAAAAGCTCCAACGGATGAGGCAGGAAAAGTCCGCATGAAACTCCGGGATCCTCGCCGACTTCTCCACGGTAATGCACTTCAAAAGACTGGAAGCTTGGGACATGAACAGTTTAGAAATATTGTACCCCCAATGTCAGGCAGTCAGACAAACAAAGATGATATTAATGGGCAAAAGCAAGATAGTCAGGCAGATAACAATTTAGTGCCTCCACAGTCAGTGGCTGTAGCAGCCCCTGACATAGCTAGCCAATTCACCAAGAATCTTAAAAATATTGCTGATATTATGTCTGTTTCCCAAGCATCTTCCCAAGTATCAACAAGTCCAGCAGTACCTTCTCAGAATCTATCTACGGAACCTGTTCCAATCAACCCAGACAAAGTTGATCAGAAAGCTGAGGACCAGCATACTGTAAGTATATCTGCACCCGAACCAACTGCAGCAGGTCCATCTCGTTCGCCGGCCACGTGGGGAGATGTTGAGCATCTATTTGAAGGATATGATGACAAGCAAAAAGCAGCTATCCAAAGAGAGAGAGCAAGAAGGATGGAAGAACAGAAGAAAATGTTTGCAGCACGCAAGCTGTGCCTTGTGCTGGATCTAGATCACACACTTCTTAATTCCGCTAAGTTTGTAGAAGTAGATCCAGTGCATGATGAAATTTTGAGAAAGAAAGAGGAACAGGATCGTAAGGAGCCACAAAGACATCTCTTCCGGTTTCAACATATGGGAATGTGGACCAAATTGCGGCCTGGGGTGTGGAATTTTTTAGAGAAGGCTAGTCATCTTTTTGAGATGCATCTTTACACAATGGGTAACAAGCTATATGCTACAGAAATGGCAAAAGTGCTAGATCCAACAGGGGCTCTATTTGCTGGACGAGTTATTTCTAGAGGTGATGATGGGGATCCTTATGATGGTGATGAGAGGGTTCCTAAGAGTAAGGATCTGGAAGGAGTTTTGGGTATGGAATCAGCTGTTGTAATTATAGATGATTCTGTGAGGGTCTGGCCACATAACAAACTGAATTTGATAGTTGTAGAAAGGTATACCTACTTTCCTTGTAGCAGACGGCAATTTGGGCTTCTAGGTCCTTCCCTGCTAGAGATTGATCATGATGAGAGACATGAAGATGGAACTCTGGCATCCTCATTGGCGGTTATTGAAAAGATACATCAGATCTTCTTCTCCCATCCTTCCCTAGATGAAGCAGATGTTAGAAATATTCTGGCCTCTGAGCAGCAAAAGATTTTGGGTGGTTGTCGTATAGTATTTAGCAGGGTGTTTCCAGTTGGTGAGGTCAATCCTCACCTACATCCTTTGTGGCAGACAGCTGAACAGTTTGGTGCTGTGTGCACCAACCAGATAGATGATCAGGTTACCCATGTAGTTGCGAATTCTCTTGGGACTGACAAGGTGAATTGGGCACTTTCTTCTGGAAAATATGTTGTGCATCCTGGCTGGGTGGAAGCGTCAGCTTTGCTTTATCGGAGGGCAAATGAGCAAGATTTTGCCATTAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

1297

Amino Acids

140.45

Weight (kDa)

5.16

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_CPL3	PF25505	208 - 326	2.4e-41	CPL3 ARM repeat domain
NIF	PF03031	984 - 1140	8.9e-22	NLI interacting factor-like phosphatase
BRCT	PF00533	1232 - 1281	9.9e-07	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2134, 2314
Acc36I	ACCTGC	5 cut(s)	968, 1247, 2134, 2314, 2801
Acc65I	GGTACC	1 cut(s)	2033
AccB1I	GGYRCC	2 cut(s)	2033, 2146
AccB7I	CCANNNNNTGG	2 cut(s)	1978, 2044
AccI	GTMKAC	2 cut(s)	752, 3416
AccII	CGCG	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	2829, 3377
AcsI	RAATTY	6 cut(s)	123, 1420, 3027, 3130, 3394, 3763
AcuI	CTGAAG	4 cut(s)	123, 1023, 1071, 1443
AcvI	CACGTG	1 cut(s)	2835
AfaI	GTAC	6 cut(s)	792, 982, 2035, 2101, 2493, 2700
AflII	CTTAAG	1 cut(s)	1382
AjnI	CCWGG	6 cut(s)	297, 2029, 2095, 2296, 3118, 3823
AjuI	GAANNNNNNNTTGG	2 cut(s)	2347, 2379
AloI	GAACNNNNNNTCC	2 cut(s)	1525, 1557
Alw21I	GWGCWC	4 cut(s)	342, 2285, 2305, 3725
Alw26I	GTCTC	6 cut(s)	293, 654, 698, 1313, 1689, 3484
Alw44I	GTGCAC	1 cut(s)	3721
AlwNI	CAGNNNCTG	4 cut(s)	560, 2246, 2591, 2603
Ama87I	CYCGRG	2 cut(s)	262, 1326
AoxI	GGCC	7 cut(s)	312, 666, 1332, 2829, 3116, 3377, 3597
ApaLI	GTGCAC	1 cut(s)	3721
ApoI	RAATTY	6 cut(s)	123, 1420, 3027, 3130, 3394, 3763
ArsI	GACNNNNNNTTYG	2 cut(s)	1399, 1431
AseI	ATTAAT	4 cut(s)	1008, 2079, 2153, 2532
Asp700I	GAANNNNTTC	1 cut(s)	2727
Asp718I	GGTACC	1 cut(s)	2033
AspA2I	CCTAGG	2 cut(s)	61, 1700
AspLEI	GCGC	1 cut(s)	1519
AspS9I	GGNCC	9 cut(s)	282, 1333, 1619, 1847, 1949, 2767, 2813, 3105, 3458
AsuC2I	CCSGG	3 cut(s)	263, 264, 2414
AsuNHI	GCTAGC	2 cut(s)	1601, 2612
AvaI	CYCGRG	2 cut(s)	262, 1326
AvaII	GGWCC	8 cut(s)	282, 1619, 1847, 1949, 2767, 2813, 3105, 3458
AvrII	CCTAGG	2 cut(s)	61, 1700
AxyI	CCTNAGG	1 cut(s)	1827
BaeGI	GKGCMC	3 cut(s)	2125, 3725, 3796
BaeI	ACNNNNGTAYC	2 cut(s)	1026, 1059
BalI	TGGCCA	1 cut(s)	3379
BamHI	GGATCC	3 cut(s)	14, 2416, 3274
BanI	GGYRCC	2 cut(s)	2033, 2146
BanII	GRGCYC	6 cut(s)	195, 310, 342, 827, 2285, 3235
BauI	CACGAG	1 cut(s)	1242
BbrPI	CACGTG	1 cut(s)	2835
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	4 cut(s)	342, 2285, 2305, 3725
BbvCI	CCTCAGC	1 cut(s)	2763
BceAI	ACGGC	3 cut(s)	299, 773, 3455
BcgI	CGANNNNNNTGC	6 cut(s)	31, 65, 82, 116, 2786, 2820
BciT130I	CCWGG	6 cut(s)	299, 2031, 2097, 2298, 3120, 3825
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	4 cut(s)	886, 2752, 3478, 3739
BcnI	CCSGG	3 cut(s)	263, 264, 2414
BcoDI	GTCTC	6 cut(s)	293, 654, 698, 1313, 1689, 3484
BfmI	CTRYAG	4 cut(s)	1680, 2592, 2805, 3198
BfrI	CTTAAG	1 cut(s)	1382
BfuAI	ACCTGC	5 cut(s)	968, 1247, 2134, 2314, 2801
BfuI	GTATCC	1 cut(s)	858
BglII	AGATCT	1 cut(s)	3546
BlnI	CCTAGG	2 cut(s)	61, 1700
BlpI	GCTNAGC	2 cut(s)	906, 2167
Bme1390I	CCNGG	9 cut(s)	263, 264, 299, 2031, 2097, 2298, 2414, 3120, 3825
Bme18I	GGWCC	8 cut(s)	282, 1619, 1847, 1949, 2767, 2813, 3105, 3458
BmeT110I	CYCGRG	2 cut(s)	262, 1326
BmgT120I	GGNCC	9 cut(s)	282, 1333, 1619, 1847, 1949, 2767, 2813, 3105, 3458
BmrFI	CCNGG	9 cut(s)	263, 264, 299, 2031, 2097, 2298, 2414, 3120, 3825
BmsI	GCATC	8 cut(s)	211, 231, 2678, 2860, 3153, 3175, 3521, 3829
BmtI	GCTAGC	2 cut(s)	1605, 2616
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	2 cut(s)	2319, 2358
Bpu10I	CCTNAGC	3 cut(s)	309, 632, 2763
Bpu1102I	GCTNAGC	2 cut(s)	906, 2167
BpuEI	CTTGAG	2 cut(s)	1792, 2269
BpuMI	CCSGG	3 cut(s)	263, 264, 2414
BsaAI	YACGTR	1 cut(s)	2835
BsaBI	GATNNNNATC	2 cut(s)	2970, 3273
BsaI	GGTCTC	2 cut(s)	293, 1689
BsaJI	CCNNGG	6 cut(s)	61, 262, 263, 1700, 2434, 3119
BsaWI	WCCGGW	4 cut(s)	284, 696, 831, 3081
BsaXI	ACNNNNNCTCC	2 cut(s)	2260, 2290
Bse118I	RCCGGY	3 cut(s)	412, 2254, 2827
Bse1I	ACTGG	5 cut(s)	1053, 2118, 2461, 3014, 3656
Bse21I	CCTNAGG	1 cut(s)	1827
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	2 cut(s)	2970, 3273
BseBI	CCWGG	6 cut(s)	299, 2031, 2097, 2298, 3120, 3825
BseDI	CCNNGG	6 cut(s)	61, 262, 263, 1700, 2434, 3119
BseJI	GATNNNNATC	2 cut(s)	2970, 3273
BseMI	GCAATG	1 cut(s)	433
BseNI	ACTGG	5 cut(s)	1053, 2118, 2461, 3014, 3656
BseSI	GKGCMC	3 cut(s)	2125, 3725, 3796
BseYI	CCCAGC	1 cut(s)	3828
BsgI	GTGCAG	2 cut(s)	338, 2775
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	7 cut(s)	314, 668, 1334, 2831, 3118, 3379, 3599
BshNI	GGYRCC	2 cut(s)	2033, 2146
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	4 cut(s)	342, 2285, 2305, 3725
BsiHKCI	CYCGRG	2 cut(s)	262, 1326
BslFI	GGGAC	4 cut(s)	260, 1527, 2481, 3787
BsmAI	GTCTC	6 cut(s)	293, 654, 698, 1313, 1689, 3484
BsmFI	GGGAC	4 cut(s)	260, 1527, 2481, 3787
BsnI	GGCC	7 cut(s)	314, 668, 1334, 2831, 3118, 3379, 3599
Bso31I	GGTCTC	2 cut(s)	293, 1689
BsoBI	CYCGRG	2 cut(s)	262, 1326
Bsp1720I	GCTNAGC	2 cut(s)	906, 2167
BspANI	GGCC	7 cut(s)	314, 668, 1334, 2831, 3118, 3379, 3599
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	2 cut(s)	1213, 3481
BspMAI	CTGCAG	1 cut(s)	2809
BspMI	ACCTGC	5 cut(s)	968, 1247, 2134, 2314, 2801
BspOI	GCTAGC	2 cut(s)	1605, 2616
BspT107I	GGYRCC	2 cut(s)	2033, 2146
BspTI	CTTAAG	1 cut(s)	1382
BspTNI	GGTCTC	2 cut(s)	293, 1689
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	3 cut(s)	412, 2254, 2827
BsrI	ACTGG	5 cut(s)	1053, 2118, 2461, 3014, 3656
BssAI	RCCGGY	3 cut(s)	412, 2254, 2827
BssECI	CCNNGG	6 cut(s)	61, 262, 263, 1700, 2434, 3119
BssNAI	GTATAC	1 cut(s)	3417
BssSI	CACGAG	1 cut(s)	1242
BssT1I	CCWWGG	2 cut(s)	61, 1700
Bst1107I	GTATAC	1 cut(s)	3417
Bst2BI	CACGAG	1 cut(s)	1242
Bst2UI	CCWGG	6 cut(s)	299, 2031, 2097, 2298, 3120, 3825
Bst6I	CTCTTC	3 cut(s)	360, 1458, 3083
BstAFI	CTTAAG	1 cut(s)	1382
BstAPI	GCANNNNNTGC	4 cut(s)	560, 1637, 2246, 2952
BstBAI	YACGTR	1 cut(s)	2835
BstDSI	CCRYGG	1 cut(s)	2434
BstEII	GGTNACC	1 cut(s)	3745
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	1519
BstMAI	GTCTC	6 cut(s)	293, 654, 698, 1313, 1689, 3484
BstMCI	CGRYCG	1 cut(s)	398
BstNI	CCWGG	6 cut(s)	299, 2031, 2097, 2298, 3120, 3825
BstPI	GGTNACC	1 cut(s)	3745
BstSCI	CCNGG	9 cut(s)	261, 262, 297, 2029, 2095, 2296, 2412, 3118, 3823
BstSFI	CTRYAG	4 cut(s)	1680, 2592, 2805, 3198
BstSLI	GKGCMC	3 cut(s)	2125, 3725, 3796
BstUI	CGCG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	8 cut(s)	14, 2416, 2965, 3010, 3220, 3274, 3313, 3546
BstXI	CCANNNNNNTGG	1 cut(s)	1597
BstYI	RGATCY	8 cut(s)	14, 2416, 2965, 3010, 3220, 3274, 3313, 3546
BstZ17I	GTATAC	1 cut(s)	3417
Bsu36I	CCTNAGG	1 cut(s)	1827
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	7 cut(s)	314, 668, 1334, 2831, 3118, 3379, 3599
BtgI	CCRYGG	1 cut(s)	2434
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	8 cut(s)	147, 160, 469, 783, 1887, 2125, 2592, 3021
BveI	ACCTGC	5 cut(s)	968, 1247, 2134, 2314, 2801
CaiI	CAGNNNCTG	4 cut(s)	560, 2246, 2591, 2603
CciI	TCATGA	2 cut(s)	1213, 3481
CfoI	GCGC	1 cut(s)	1519
Cfr10I	RCCGGY	3 cut(s)	412, 2254, 2827
Cfr13I	GGNCC	9 cut(s)	282, 1333, 1619, 1847, 1949, 2767, 2813, 3105, 3458
Cfr9I	CCCGGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	3828
Csp6I	GTAC	6 cut(s)	791, 981, 2034, 2100, 2492, 2699
CspCI	CAANNNNNGTGG	4 cut(s)	1311, 1346, 1863, 1898
CviQI	GTAC	6 cut(s)	791, 981, 2034, 2100, 2492, 2699
EaeI	YGGCCR	2 cut(s)	2829, 3377
Eam1104I	CTCTTC	3 cut(s)	360, 1458, 3083
EarI	CTCTTC	3 cut(s)	360, 1458, 3083
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	2 cut(s)	340, 2283
Eco130I	CCWWGG	2 cut(s)	61, 1700
Eco24I	GRGCYC	6 cut(s)	195, 310, 342, 827, 2285, 3235
Eco31I	GGTCTC	2 cut(s)	293, 1689
Eco32I	GATATC	2 cut(s)	936, 2334
Eco47I	GGWCC	8 cut(s)	282, 1619, 1847, 1949, 2767, 2813, 3105, 3458
Eco53kI	GAGCTC	2 cut(s)	340, 2283
Eco57I	CTGAAG	4 cut(s)	123, 1023, 1071, 1443
Eco72I	CACGTG	1 cut(s)	2835
Eco81I	CCTNAGG	1 cut(s)	1827
Eco88I	CYCGRG	2 cut(s)	262, 1326
Eco91I	GGTNACC	1 cut(s)	3745
EcoICRI	GAGCTC	2 cut(s)	340, 2283
EcoO109I	RGGNCCY	1 cut(s)	3458
EcoO65I	GGTNACC	1 cut(s)	3745
EcoRI	GAATTC	2 cut(s)	1420, 3763
EcoRII	CCWGG	6 cut(s)	297, 2029, 2095, 2296, 3118, 3823
EcoRV	GATATC	2 cut(s)	936, 2334
EcoT14I	CCWWGG	2 cut(s)	61, 1700
EcoT22I	ATGCAT	2 cut(s)	1362, 3168
EcoT38I	GRGCYC	6 cut(s)	195, 310, 342, 827, 2285, 3235
ErhI	CCWWGG	2 cut(s)	61, 1700
FalI	AAGNNNNNCTT	6 cut(s)	750, 782, 1212, 1244, 2155, 2187
FaqI	GGGAC	4 cut(s)	260, 1527, 2481, 3787
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	3093
FbaI	TGATCA	4 cut(s)	886, 2752, 3478, 3739
FblI	GTMKAC	2 cut(s)	752, 3416
FriOI	GRGCYC	6 cut(s)	195, 310, 342, 827, 2285, 3235
GlaI	GCGC	1 cut(s)	1518
GsaI	CCCAGC	1 cut(s)	3832
GsuI	CTGGAG	2 cut(s)	2319, 2358
HaeIII	GGCC	7 cut(s)	314, 668, 1334, 2831, 3118, 3379, 3599
HgaI	GACGC	1 cut(s)	3828
HhaI	GCGC	1 cut(s)	1519
Hin6I	GCGC	1 cut(s)	1517
HinP1I	GCGC	1 cut(s)	1517
HincII	GTYRAC	2 cut(s)	295, 1018
HindII	GTYRAC	2 cut(s)	295, 1018
HindIII	AAGCTT	2 cut(s)	718, 2461
HpaI	GTTAAC	2 cut(s)	295, 1018
Hpy99I	CGWCG	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	2834
HpySE526I	ACGT	1 cut(s)	2834
HspAI	GCGC	1 cut(s)	1517
KpnI	GGTACC	1 cut(s)	2037
KroI	GCCGGC	2 cut(s)	2254, 2827
KroNI	GCCGGC	2 cut(s)	2256, 2829
Ksp22I	TGATCA	4 cut(s)	886, 2752, 3478, 3739
KspAI	GTTAAC	2 cut(s)	295, 1018
LmnI	GCTCC	5 cut(s)	838, 2300, 2339, 2380, 3061
LweI	GCATC	8 cut(s)	211, 231, 2678, 2860, 3153, 3175, 3521, 3829
MaeII	ACGT	1 cut(s)	2834
MaeIII	GTNAC	2 cut(s)	3182, 3745
MfeI	CAATTG	3 cut(s)	19, 37, 1758
MflI	RGATCY	8 cut(s)	14, 2416, 2965, 3010, 3220, 3274, 3313, 3546
MlsI	TGGCCA	1 cut(s)	3379
MluNI	TGGCCA	1 cut(s)	3379
MlyI	GAGTC	4 cut(s)	542, 656, 1173, 1841
MmeI	TCCRAC	8 cut(s)	483, 1296, 1397, 1908, 1927, 2234, 2402, 3248
Mox20I	TGGCCA	1 cut(s)	3379
Mph1103I	ATGCAT	2 cut(s)	1362, 3168
MroNI	GCCGGC	2 cut(s)	2254, 2827
MroXI	GAANNNNTTC	1 cut(s)	2727
MscI	TGGCCA	1 cut(s)	3379
MslI	CAYNNNNRTG	4 cut(s)	1365, 1595, 2439, 3498
Msp20I	TGGCCA	1 cut(s)	3379
MspA1I	CMGCKG	4 cut(s)	557, 905, 3344, 3701
MspCI	CTTAAG	1 cut(s)	1382
MspR9I	CCNGG	9 cut(s)	263, 264, 299, 2031, 2097, 2298, 2414, 3120, 3825
MunI	CAATTG	3 cut(s)	19, 37, 1758
MvaI	CCWGG	6 cut(s)	299, 2031, 2097, 2298, 3120, 3825
MvnI	CGCG	1 cut(s)	273
NaeI	GCCGGC	2 cut(s)	2256, 2829
NciI	CCSGG	3 cut(s)	263, 264, 2414
NdeI	CATATG	1 cut(s)	3093
NgoMIV	GCCGGC	2 cut(s)	2254, 2827
NheI	GCTAGC	2 cut(s)	1601, 2612
NmeAIII	GCCGAG	1 cut(s)	694
NsiI	ATGCAT	2 cut(s)	1362, 3168
PacI	TTAATTAA	1 cut(s)	1962
PagI	TCATGA	2 cut(s)	1213, 3481
PaqCI	CACCTGC	2 cut(s)	2134, 2314
PcsI	WCGNNNNNNNCGW	1 cut(s)	2831
PdiI	GCCGGC	2 cut(s)	2256, 2829
PdmI	GAANNNNTTC	1 cut(s)	2727
PflMI	CCANNNNNTGG	2 cut(s)	1978, 2044
PfoI	TCCNGGA	1 cut(s)	2412
Ple19I	CGATCG	1 cut(s)	398
PleI	GAGTC	4 cut(s)	541, 655, 1173, 1840
PmaCI	CACGTG	1 cut(s)	2835
PmlI	CACGTG	1 cut(s)	2835
PpsI	GAGTC	4 cut(s)	541, 655, 1173, 1840
Ppu21I	YACGTR	1 cut(s)	2835
PpuMI	RGGWCCY	1 cut(s)	3458
PshBI	ATTAAT	4 cut(s)	1008, 2079, 2153, 2532
Psp124BI	GAGCTC	2 cut(s)	342, 2285
Psp5II	RGGWCCY	1 cut(s)	3458
Psp6I	CCWGG	6 cut(s)	297, 2029, 2095, 2296, 3118, 3823
PspCI	CACGTG	1 cut(s)	2835
PspEI	GGTNACC	1 cut(s)	3745
PspFI	CCCAGC	1 cut(s)	3828
PspGI	CCWGG	6 cut(s)	297, 2029, 2095, 2296, 3118, 3823
PspPI	GGNCC	9 cut(s)	282, 1333, 1619, 1847, 1949, 2767, 2813, 3105, 3458
PspPPI	RGGWCCY	1 cut(s)	3458
PsrI	GAACNNNNNNTAC	2 cut(s)	1095, 1127
PstI	CTGCAG	1 cut(s)	2809
PstNI	CAGNNNCTG	4 cut(s)	560, 2246, 2591, 2603
PsuI	RGATCY	8 cut(s)	14, 2416, 2965, 3010, 3220, 3274, 3313, 3546
PvuI	CGATCG	1 cut(s)	398
PvuII	CAGCTG	3 cut(s)	557, 3344, 3701
RsaI	GTAC	6 cut(s)	792, 982, 2035, 2101, 2493, 2700
RsaNI	GTAC	6 cut(s)	791, 981, 2034, 2100, 2492, 2699
RseI	CAYNNNNRTG	4 cut(s)	1365, 1595, 2439, 3498
SacI	GAGCTC	2 cut(s)	342, 2285
Sau96I	GGNCC	9 cut(s)	282, 1333, 1619, 1847, 1949, 2767, 2813, 3105, 3458
SchI	GAGTC	4 cut(s)	542, 656, 1173, 1841
ScrFI	CCNGG	9 cut(s)	263, 264, 299, 2031, 2097, 2298, 2414, 3120, 3825
SfaNI	GCATC	8 cut(s)	211, 231, 2678, 2860, 3153, 3175, 3521, 3829
SfcI	CTRYAG	4 cut(s)	1680, 2592, 2805, 3198
SinI	GGWCC	8 cut(s)	282, 1619, 1847, 1949, 2767, 2813, 3105, 3458
SmaI	CCCGGG	1 cut(s)	264
SmiMI	CAYNNNNRTG	4 cut(s)	1365, 1595, 2439, 3498
SmlI	CTYRAG	3 cut(s)	1382, 1807, 2284
SmoI	CTYRAG	3 cut(s)	1382, 1807, 2284
SspI	AATATT	3 cut(s)	2488, 2641, 3592
SstI	GAGCTC	2 cut(s)	342, 2285
StyD4I	CCNGG	9 cut(s)	261, 262, 297, 2029, 2095, 2296, 2412, 3118, 3823
StyI	CCWWGG	2 cut(s)	61, 1700
TaiI	ACGT	1 cut(s)	2837
TaqI	TCGA	6 cut(s)	51, 134, 374, 818, 1708, 2106
TauI	GCSGC	2 cut(s)	276, 3118
TscAI	CASTG	8 cut(s)	147, 160, 469, 790, 1887, 2125, 2592, 3021
TspDTI	ATGAA	9 cut(s)	596, 1103, 1233, 1383, 2420, 2487, 3039, 3510, 3588
TspGWI	ACGGA	2 cut(s)	2396, 2735
TspMI	CCCGGG	1 cut(s)	262
TspRI	CASTG	8 cut(s)	147, 160, 469, 790, 1887, 2125, 2592, 3021
Van91I	CCANNNNNTGG	2 cut(s)	1978, 2044
Vha464I	CTTAAG	1 cut(s)	1382
VneI	GTGCAC	1 cut(s)	3721
VpaK11BI	GGWCC	8 cut(s)	282, 1619, 1847, 1949, 2767, 2813, 3105, 3458
VspI	ATTAAT	4 cut(s)	1008, 2079, 2153, 2532
XapI	RAATTY	6 cut(s)	123, 1420, 3027, 3130, 3394, 3763
XbaI	TCTAGA	2 cut(s)	2968, 3257
XmaI	CCCGGG	1 cut(s)	262
XmaJI	CCTAGG	2 cut(s)	61, 1700
XmiI	GTMKAC	2 cut(s)	752, 3416
XmnI	GAANNNNTTC	1 cut(s)	2727
Zsp2I	ATGCAT	2 cut(s)	1362, 3168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.