RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33540 AT2G33540 |
| fragaria_vesca | FvH4_4g22870 FvH4_4g22870 FvH4_4g22870 |
| malus_domestica | MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1 |
| prunus_persica | Prupe.1G217600_v2.0.a1 |
| pyrus_communis | pycom13g11190 pycom13g11200 pycom16g10920 |
| rosa_chinensis | RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121 |
| rosa_laevigata | RLG00000007096 |
| rosa_multiflora | Rmu_sc0000846.1_g000014 |
| rosa_roxburghii | Rroxscaffold_5G00370740 |
| rosa_rugosa | Rorug04G0233100 |
| rosa_samantha | Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000 |
| rosa_wichuraiana | Rw4G025040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2068, 2278 |
| Acc36I | ACCTGC | 5 cut(s) | 968, 1247, 2068, 2278, 2765 |
| AccB1I | GGYRCC | 1 cut(s) | 2080 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1978 |
| AccI | GTMKAC | 1 cut(s) | 752 |
| AccII | CGCG | 1 cut(s) | 276 |
| AcoI | YGGCCR | 2 cut(s) | 2793, 3341 |
| AcsI | RAATTY | 5 cut(s) | 123, 1420, 2991, 3094, 3358 |
| AcuI | CTGAAG | 4 cut(s) | 123, 1071, 1443, 1665 |
| AcvI | CACGTG | 1 cut(s) | 2799 |
| AfaI | GTAC | 4 cut(s) | 982, 2035, 2457, 2664 |
| AflII | CTTAAG | 2 cut(s) | 1382, 2165 |
| AjnI | CCWGG | 4 cut(s) | 300, 2029, 2260, 3082 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2311, 2343 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1525, 1557 |
| Alw21I | GWGCWC | 3 cut(s) | 345, 2249, 2269 |
| Alw26I | GTCTC | 4 cut(s) | 654, 698, 1313, 1689 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 560, 1646, 2555, 2567 |
| Ama87I | CYCGRG | 2 cut(s) | 265, 1326 |
| AoxI | GGCC | 6 cut(s) | 315, 666, 1332, 2793, 3080, 3341 |
| ApoI | RAATTY | 5 cut(s) | 123, 1420, 2991, 3094, 3358 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1399, 1431 |
| AseI | ATTAAT | 3 cut(s) | 1008, 2013, 2496 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2691 |
| AspA2I | CCTAGG | 2 cut(s) | 61, 1700 |
| AspLEI | GCGC | 1 cut(s) | 1519 |
| AspS9I | GGNCC | 8 cut(s) | 285, 1333, 1619, 1847, 1949, 2731, 2777, 3069 |
| AsuC2I | CCSGG | 3 cut(s) | 266, 267, 2378 |
| AsuNHI | GCTAGC | 2 cut(s) | 1601, 2576 |
| AvaI | CYCGRG | 2 cut(s) | 265, 1326 |
| AvaII | GGWCC | 7 cut(s) | 285, 1619, 1847, 1949, 2731, 2777, 3069 |
| AvrII | CCTAGG | 2 cut(s) | 61, 1700 |
| AxyI | CCTNAGG | 1 cut(s) | 1827 |
| BaeGI | GKGCMC | 2 cut(s) | 2059, 2220 |
| BalI | TGGCCA | 1 cut(s) | 3343 |
| BamHI | GGATCC | 3 cut(s) | 14, 2380, 3238 |
| BanI | GGYRCC | 1 cut(s) | 2080 |
| BanII | GRGCYC | 5 cut(s) | 313, 345, 827, 2249, 3199 |
| BauI | CACGAG | 1 cut(s) | 1242 |
| BbrPI | CACGTG | 1 cut(s) | 2799 |
| BbsI | GAAGAC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 3 cut(s) | 345, 2249, 2269 |
| BbvCI | CCTCAGC | 1 cut(s) | 2727 |
| BceAI | ACGGC | 1 cut(s) | 302 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 31, 65, 82, 116, 2750, 2784 |
| BciT130I | CCWGG | 4 cut(s) | 302, 2031, 2262, 3084 |
| BciVI | GTATCC | 1 cut(s) | 858 |
| BclI | TGATCA | 1 cut(s) | 2716 |
| BcnI | CCSGG | 3 cut(s) | 266, 267, 2378 |
| BcoDI | GTCTC | 4 cut(s) | 654, 698, 1313, 1689 |
| BfmI | CTRYAG | 3 cut(s) | 2556, 2769, 3162 |
| BfrI | CTTAAG | 2 cut(s) | 1382, 2165 |
| BfuAI | ACCTGC | 5 cut(s) | 968, 1247, 2068, 2278, 2765 |
| BfuI | GTATCC | 1 cut(s) | 858 |
| BlnI | CCTAGG | 2 cut(s) | 61, 1700 |
| BlpI | GCTNAGC | 3 cut(s) | 906, 2101, 2199 |
| Bme1390I | CCNGG | 7 cut(s) | 266, 267, 302, 2031, 2262, 2378, 3084 |
| Bme18I | GGWCC | 7 cut(s) | 285, 1619, 1847, 1949, 2731, 2777, 3069 |
| BmeT110I | CYCGRG | 2 cut(s) | 265, 1326 |
| BmgT120I | GGNCC | 8 cut(s) | 285, 1333, 1619, 1847, 1949, 2731, 2777, 3069 |
| BmiI | GGNNCC | 8 cut(s) | 16, 286, 1970, 2082, 2382, 2688, 3240, 3264 |
| BmrFI | CCNGG | 7 cut(s) | 266, 267, 302, 2031, 2262, 2378, 3084 |
| BmsI | GCATC | 6 cut(s) | 214, 234, 2642, 2824, 3117, 3139 |
| BmtI | GCTAGC | 2 cut(s) | 1605, 2580 |
| BpiI | GAAGAC | 1 cut(s) | 396 |
| BpmI | CTGGAG | 2 cut(s) | 2283, 2322 |
| Bpu10I | CCTNAGC | 3 cut(s) | 312, 632, 2727 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 906, 2101, 2199 |
| BpuEI | CTTGAG | 2 cut(s) | 1792, 2233 |
| BpuMI | CCSGG | 3 cut(s) | 266, 267, 2378 |
| BsaAI | YACGTR | 1 cut(s) | 2799 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2934, 3237 |
| BsaI | GGTCTC | 1 cut(s) | 1689 |
| BsaJI | CCNNGG | 6 cut(s) | 61, 265, 266, 1700, 2398, 3083 |
| BsaWI | WCCGGW | 4 cut(s) | 287, 696, 831, 3045 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2224, 2254 |
| Bse118I | RCCGGY | 2 cut(s) | 412, 2791 |
| Bse1I | ACTGG | 3 cut(s) | 1053, 2052, 2978 |
| Bse21I | CCTNAGG | 1 cut(s) | 1827 |
| Bse3DI | GCAATG | 2 cut(s) | 433, 2571 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2934, 3237 |
| BseBI | CCWGG | 4 cut(s) | 302, 2031, 2262, 3084 |
| BseDI | CCNNGG | 6 cut(s) | 61, 265, 266, 1700, 2398, 3083 |
| BseJI | GATNNNNATC | 2 cut(s) | 2934, 3237 |
| BseMI | GCAATG | 2 cut(s) | 433, 2571 |
| BseNI | ACTGG | 3 cut(s) | 1053, 2052, 2978 |
| BseSI | GKGCMC | 2 cut(s) | 2059, 2220 |
| BseYI | CCCAGC | 1 cut(s) | 952 |
| BsgI | GTGCAG | 3 cut(s) | 341, 1659, 2739 |
| Bsh1236I | CGCG | 1 cut(s) | 276 |
| Bsh1285I | CGRYCG | 1 cut(s) | 398 |
| BshFI | GGCC | 6 cut(s) | 317, 668, 1334, 2795, 3082, 3343 |
| BshNI | GGYRCC | 1 cut(s) | 2080 |
| BsiEI | CGRYCG | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 3 cut(s) | 345, 2249, 2269 |
| BsiHKCI | CYCGRG | 2 cut(s) | 265, 1326 |
| BsiSI | CCGG | 9 cut(s) | 266, 288, 413, 423, 697, 832, 2377, 2792, 3046 |
| BslFI | GGGAC | 3 cut(s) | 263, 1527, 2445 |
| BsmAI | GTCTC | 4 cut(s) | 654, 698, 1313, 1689 |
| BsmFI | GGGAC | 3 cut(s) | 263, 1527, 2445 |
| BsnI | GGCC | 6 cut(s) | 317, 668, 1334, 2795, 3082, 3343 |
| Bso31I | GGTCTC | 1 cut(s) | 1689 |
| BsoBI | CYCGRG | 2 cut(s) | 265, 1326 |
| Bsp1286I | GDGCHC | 8 cut(s) | 313, 345, 827, 2059, 2220, 2249, 2269, 3199 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 906, 2101, 2199 |
| BspANI | GGCC | 6 cut(s) | 317, 668, 1334, 2795, 3082, 3343 |
| BspFNI | CGCG | 1 cut(s) | 276 |
| BspHI | TCATGA | 1 cut(s) | 1213 |
| BspLI | GGNNCC | 8 cut(s) | 16, 286, 1970, 2082, 2382, 2688, 3240, 3264 |
| BspMAI | CTGCAG | 1 cut(s) | 2773 |
| BspMI | ACCTGC | 5 cut(s) | 968, 1247, 2068, 2278, 2765 |
| BspOI | GCTAGC | 2 cut(s) | 1605, 2580 |
| BspT107I | GGYRCC | 1 cut(s) | 2080 |
| BspTI | CTTAAG | 2 cut(s) | 1382, 2165 |
| BspTNI | GGTCTC | 1 cut(s) | 1689 |
| BsrDI | GCAATG | 2 cut(s) | 433, 2571 |
| BsrFI | RCCGGY | 2 cut(s) | 412, 2791 |
| BsrI | ACTGG | 3 cut(s) | 1053, 2052, 2978 |
| BssAI | RCCGGY | 2 cut(s) | 412, 2791 |
| BssECI | CCNNGG | 6 cut(s) | 61, 265, 266, 1700, 2398, 3083 |
| BssSI | CACGAG | 1 cut(s) | 1242 |
| BssT1I | CCWWGG | 2 cut(s) | 61, 1700 |
| Bst2BI | CACGAG | 1 cut(s) | 1242 |
| Bst2UI | CCWGG | 4 cut(s) | 302, 2031, 2262, 3084 |
| Bst4CI | ACNGT | 9 cut(s) | 464, 1002, 1801, 1978, 2038, 2402, 2442, 2547, 2743 |
| Bst6I | CTCTTC | 3 cut(s) | 363, 1458, 3047 |
| BstAFI | CTTAAG | 2 cut(s) | 1382, 2165 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 560, 1637, 2916 |
| BstBAI | YACGTR | 1 cut(s) | 2799 |
| BstDSI | CCRYGG | 1 cut(s) | 2398 |
| BstFNI | CGCG | 1 cut(s) | 276 |
| BstHHI | GCGC | 1 cut(s) | 1519 |
| BstMAI | GTCTC | 4 cut(s) | 654, 698, 1313, 1689 |
| BstMCI | CGRYCG | 1 cut(s) | 398 |
| BstNI | CCWGG | 4 cut(s) | 302, 2031, 2262, 3084 |
| BstSCI | CCNGG | 7 cut(s) | 264, 265, 300, 2029, 2260, 2376, 3082 |
| BstSFI | CTRYAG | 3 cut(s) | 2556, 2769, 3162 |
| BstSLI | GKGCMC | 2 cut(s) | 2059, 2220 |
| BstUI | CGCG | 1 cut(s) | 276 |
| BstV2I | GAAGAC | 1 cut(s) | 396 |
| BstX2I | RGATCY | 7 cut(s) | 14, 2380, 2929, 2974, 3184, 3238, 3277 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1597 |
| BstYI | RGATCY | 7 cut(s) | 14, 2380, 2929, 2974, 3184, 3238, 3277 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1827 |
| BsuI | GTATCC | 1 cut(s) | 858 |
| BsuRI | GGCC | 6 cut(s) | 317, 668, 1334, 2795, 3082, 3343 |
| BtgI | CCRYGG | 1 cut(s) | 2398 |
| BtsI | GCAGTG | 1 cut(s) | 783 |
| BtsIMutI | CAGTG | 9 cut(s) | 147, 160, 469, 783, 1797, 1887, 2059, 2556, 2985 |
| BveI | ACCTGC | 5 cut(s) | 968, 1247, 2068, 2278, 2765 |
| CaiI | CAGNNNCTG | 4 cut(s) | 560, 1646, 2555, 2567 |
| CciI | TCATGA | 1 cut(s) | 1213 |
| CfoI | GCGC | 1 cut(s) | 1519 |
| Cfr10I | RCCGGY | 2 cut(s) | 412, 2791 |
| Cfr13I | GGNCC | 8 cut(s) | 285, 1333, 1619, 1847, 1949, 2731, 2777, 3069 |
| Cfr9I | CCCGGG | 1 cut(s) | 265 |
| Csp6I | GTAC | 4 cut(s) | 981, 2034, 2456, 2663 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1311, 1346, 1863, 1898 |
| CviQI | GTAC | 4 cut(s) | 981, 2034, 2456, 2663 |
| EaeI | YGGCCR | 2 cut(s) | 2793, 3341 |
| Eam1104I | CTCTTC | 3 cut(s) | 363, 1458, 3047 |
| EarI | CTCTTC | 3 cut(s) | 363, 1458, 3047 |
| EciI | GGCGGA | 1 cut(s) | 222 |
| Ecl136II | GAGCTC | 2 cut(s) | 343, 2247 |
| Eco130I | CCWWGG | 2 cut(s) | 61, 1700 |
| Eco24I | GRGCYC | 5 cut(s) | 313, 345, 827, 2249, 3199 |
| Eco31I | GGTCTC | 1 cut(s) | 1689 |
| Eco32I | GATATC | 2 cut(s) | 936, 2298 |
| Eco47I | GGWCC | 7 cut(s) | 285, 1619, 1847, 1949, 2731, 2777, 3069 |
| Eco53kI | GAGCTC | 2 cut(s) | 343, 2247 |
| Eco57I | CTGAAG | 4 cut(s) | 123, 1071, 1443, 1665 |
| Eco72I | CACGTG | 1 cut(s) | 2799 |
| Eco81I | CCTNAGG | 1 cut(s) | 1827 |
| Eco88I | CYCGRG | 2 cut(s) | 265, 1326 |
| EcoICRI | GAGCTC | 2 cut(s) | 343, 2247 |
| EcoRI | GAATTC | 1 cut(s) | 1420 |
| EcoRII | CCWGG | 4 cut(s) | 300, 2029, 2260, 3082 |
| EcoRV | GATATC | 2 cut(s) | 936, 2298 |
| EcoT14I | CCWWGG | 2 cut(s) | 61, 1700 |
| EcoT22I | ATGCAT | 2 cut(s) | 1362, 3132 |
| EcoT38I | GRGCYC | 5 cut(s) | 313, 345, 827, 2249, 3199 |
| ErhI | CCWWGG | 2 cut(s) | 61, 1700 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 750, 782, 1212, 1244, 2089, 2121 |
| FaqI | GGGAC | 3 cut(s) | 263, 1527, 2445 |
| FauI | CCCGC | 2 cut(s) | 240, 2227 |
| FauNDI | CATATG | 1 cut(s) | 3057 |
| FbaI | TGATCA | 1 cut(s) | 2716 |
| FblI | GTMKAC | 1 cut(s) | 752 |
| FriOI | GRGCYC | 5 cut(s) | 313, 345, 827, 2249, 3199 |
| GlaI | GCGC | 1 cut(s) | 1518 |
| GsaI | CCCAGC | 1 cut(s) | 956 |
| GsuI | CTGGAG | 2 cut(s) | 2283, 2322 |
| HaeIII | GGCC | 6 cut(s) | 317, 668, 1334, 2795, 3082, 3343 |
| HapII | CCGG | 9 cut(s) | 266, 288, 413, 423, 697, 832, 2377, 2792, 3046 |
| HhaI | GCGC | 1 cut(s) | 1519 |
| Hin6I | GCGC | 1 cut(s) | 1517 |
| HinP1I | GCGC | 1 cut(s) | 1517 |
| HincII | GTYRAC | 2 cut(s) | 298, 1018 |
| HindII | GTYRAC | 2 cut(s) | 298, 1018 |
| HindIII | AAGCTT | 2 cut(s) | 718, 2425 |
| HpaI | GTTAAC | 2 cut(s) | 298, 1018 |
| HpaII | CCGG | 9 cut(s) | 266, 288, 413, 423, 697, 832, 2377, 2792, 3046 |
| Hpy166II | GTNNAC | 9 cut(s) | 298, 625, 753, 783, 1018, 1065, 1439, 2330, 3069 |
| Hpy8I | GTNNAC | 9 cut(s) | 298, 625, 753, 783, 1018, 1065, 1439, 2330, 3069 |
| Hpy99I | CGWCG | 1 cut(s) | 403 |
| HpyCH4III | ACNGT | 9 cut(s) | 464, 1002, 1801, 1978, 2038, 2402, 2442, 2547, 2743 |
| HpyCH4IV | ACGT | 1 cut(s) | 2798 |
| HpySE526I | ACGT | 1 cut(s) | 2798 |
| HspAI | GCGC | 1 cut(s) | 1517 |
| KroI | GCCGGC | 1 cut(s) | 2791 |
| KroNI | GCCGGC | 1 cut(s) | 2793 |
| Ksp22I | TGATCA | 1 cut(s) | 2716 |
| KspAI | GTTAAC | 2 cut(s) | 298, 1018 |
| LmnI | GCTCC | 4 cut(s) | 838, 2264, 2303, 2344 |
| LweI | GCATC | 6 cut(s) | 214, 234, 2642, 2824, 3117, 3139 |
| MaeII | ACGT | 1 cut(s) | 2798 |
| MaeIII | GTNAC | 1 cut(s) | 3146 |
| MfeI | CAATTG | 3 cut(s) | 19, 37, 1758 |
| MflI | RGATCY | 7 cut(s) | 14, 2380, 2929, 2974, 3184, 3238, 3277 |
| MhlI | GDGCHC | 8 cut(s) | 313, 345, 827, 2059, 2220, 2249, 2269, 3199 |
| MlsI | TGGCCA | 1 cut(s) | 3343 |
| MluNI | TGGCCA | 1 cut(s) | 3343 |
| MlyI | GAGTC | 4 cut(s) | 542, 656, 1173, 1841 |
| MmeI | TCCRAC | 8 cut(s) | 483, 1296, 1397, 1908, 1927, 2168, 2366, 3212 |
| Mox20I | TGGCCA | 1 cut(s) | 3343 |
| Mph1103I | ATGCAT | 2 cut(s) | 1362, 3132 |
| MroNI | GCCGGC | 1 cut(s) | 2791 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2691 |
| MscI | TGGCCA | 1 cut(s) | 3343 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1365, 1595, 2403 |
| Msp20I | TGGCCA | 1 cut(s) | 3343 |
| MspA1I | CMGCKG | 4 cut(s) | 557, 905, 956, 3308 |
| MspCI | CTTAAG | 2 cut(s) | 1382, 2165 |
| MspI | CCGG | 9 cut(s) | 266, 288, 413, 423, 697, 832, 2377, 2792, 3046 |
| MspR9I | CCNGG | 7 cut(s) | 266, 267, 302, 2031, 2262, 2378, 3084 |
| MunI | CAATTG | 3 cut(s) | 19, 37, 1758 |
| MvaI | CCWGG | 4 cut(s) | 302, 2031, 2262, 3084 |
| MvnI | CGCG | 1 cut(s) | 276 |
| NaeI | GCCGGC | 1 cut(s) | 2793 |
| NciI | CCSGG | 3 cut(s) | 266, 267, 2378 |
| NdeI | CATATG | 1 cut(s) | 3057 |
| NgoMIV | GCCGGC | 1 cut(s) | 2791 |
| NheI | GCTAGC | 2 cut(s) | 1601, 2576 |
| NlaIV | GGNNCC | 8 cut(s) | 16, 286, 1970, 2082, 2382, 2688, 3240, 3264 |
| NmeAIII | GCCGAG | 1 cut(s) | 694 |
| NsiI | ATGCAT | 2 cut(s) | 1362, 3132 |
| PacI | TTAATTAA | 1 cut(s) | 1962 |
| PagI | TCATGA | 1 cut(s) | 1213 |
| PaqCI | CACCTGC | 2 cut(s) | 2068, 2278 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2795 |
| PdiI | GCCGGC | 1 cut(s) | 2793 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2691 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1978 |
| PfoI | TCCNGGA | 1 cut(s) | 2376 |
| Ple19I | CGATCG | 1 cut(s) | 398 |
| PleI | GAGTC | 4 cut(s) | 541, 655, 1173, 1840 |
| PmaCI | CACGTG | 1 cut(s) | 2799 |
| PmlI | CACGTG | 1 cut(s) | 2799 |
| PpsI | GAGTC | 4 cut(s) | 541, 655, 1173, 1840 |
| Ppu21I | YACGTR | 1 cut(s) | 2799 |
| PshBI | ATTAAT | 3 cut(s) | 1008, 2013, 2496 |
| Psp124BI | GAGCTC | 2 cut(s) | 345, 2249 |
| Psp6I | CCWGG | 4 cut(s) | 300, 2029, 2260, 3082 |
| PspCI | CACGTG | 1 cut(s) | 2799 |
| PspFI | CCCAGC | 1 cut(s) | 952 |
| PspGI | CCWGG | 4 cut(s) | 300, 2029, 2260, 3082 |
| PspN4I | GGNNCC | 8 cut(s) | 16, 286, 1970, 2082, 2382, 2688, 3240, 3264 |
| PspPI | GGNCC | 8 cut(s) | 285, 1333, 1619, 1847, 1949, 2731, 2777, 3069 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1095, 1127 |
| PstI | CTGCAG | 1 cut(s) | 2773 |
| PstNI | CAGNNNCTG | 4 cut(s) | 560, 1646, 2555, 2567 |
| PsuI | RGATCY | 7 cut(s) | 14, 2380, 2929, 2974, 3184, 3238, 3277 |
| PvuI | CGATCG | 1 cut(s) | 398 |
| PvuII | CAGCTG | 3 cut(s) | 557, 956, 3308 |
| RsaI | GTAC | 4 cut(s) | 982, 2035, 2457, 2664 |
| RsaNI | GTAC | 4 cut(s) | 981, 2034, 2456, 2663 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1365, 1595, 2403 |
| SacI | GAGCTC | 2 cut(s) | 345, 2249 |
| Sau96I | GGNCC | 8 cut(s) | 285, 1333, 1619, 1847, 1949, 2731, 2777, 3069 |
| SchI | GAGTC | 4 cut(s) | 542, 656, 1173, 1841 |
| ScrFI | CCNGG | 7 cut(s) | 266, 267, 302, 2031, 2262, 2378, 3084 |
| SduI | GDGCHC | 8 cut(s) | 313, 345, 827, 2059, 2220, 2249, 2269, 3199 |
| SfaNI | GCATC | 6 cut(s) | 214, 234, 2642, 2824, 3117, 3139 |
| SfcI | CTRYAG | 3 cut(s) | 2556, 2769, 3162 |
| SinI | GGWCC | 7 cut(s) | 285, 1619, 1847, 1949, 2731, 2777, 3069 |
| SmaI | CCCGGG | 1 cut(s) | 267 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1365, 1595, 2403 |
| SmlI | CTYRAG | 4 cut(s) | 1382, 1807, 2165, 2248 |
| SmoI | CTYRAG | 4 cut(s) | 1382, 1807, 2165, 2248 |
| SspI | AATATT | 2 cut(s) | 2452, 2605 |
| SstI | GAGCTC | 2 cut(s) | 345, 2249 |
| StyD4I | CCNGG | 7 cut(s) | 264, 265, 300, 2029, 2260, 2376, 3082 |
| StyI | CCWWGG | 2 cut(s) | 61, 1700 |
| TaaI | ACNGT | 9 cut(s) | 464, 1002, 1801, 1978, 2038, 2402, 2442, 2547, 2743 |
| TaiI | ACGT | 1 cut(s) | 2801 |
| TaqI | TCGA | 5 cut(s) | 51, 134, 377, 818, 2040 |
| TauI | GCSGC | 2 cut(s) | 279, 3082 |
| TscAI | CASTG | 9 cut(s) | 147, 160, 469, 790, 1804, 1887, 2059, 2556, 2985 |
| TspDTI | ATGAA | 8 cut(s) | 596, 1062, 1103, 1233, 1383, 2384, 2451, 3003 |
| TspGWI | ACGGA | 2 cut(s) | 2360, 2699 |
| TspMI | CCCGGG | 1 cut(s) | 265 |
| TspRI | CASTG | 9 cut(s) | 147, 160, 469, 790, 1804, 1887, 2059, 2556, 2985 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1978 |
| Vha464I | CTTAAG | 2 cut(s) | 1382, 2165 |
| VpaK11BI | GGWCC | 7 cut(s) | 285, 1619, 1847, 1949, 2731, 2777, 3069 |
| VspI | ATTAAT | 3 cut(s) | 1008, 2013, 2496 |
| XapI | RAATTY | 5 cut(s) | 123, 1420, 2991, 3094, 3358 |
| XbaI | TCTAGA | 2 cut(s) | 2932, 3221 |
| XmaI | CCCGGG | 1 cut(s) | 265 |
| XmaJI | CCTAGG | 2 cut(s) | 61, 1700 |
| XmiI | GTMKAC | 1 cut(s) | 752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2691 |
| Zsp2I | ATGCAT | 2 cut(s) | 1362, 3132 |