Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Reverse (-)

60258974 .. 60265914

Gene Structure 6941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG289100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3447 bp

ATGGTCGTTGGTGGATCCAATTGTATTGGGTGGAACAATTGCATAGAAATCGAAGAAACCCTAGGGGGTGTGATGGGCAAGGATGAGAGTAGCAAAGAGGTTGGGGATGTTGAAGAAGGTGAAATTTCCGATTCGACTTCAGTGGAGGAGATCAGTGAGGAGGATTTTGTTAAGCAGGAATTGAAGGTTGAGCCGAAATCCAATGGCGGAGGAGGAGATGCTGGTAGGGTTTGGACGATGCGGGACATCTACAACTACCCGGGGTTTCGCGGCTACGGGTCCGGTCTGGTTAACCTGGCTTGGGCTCAGGCCGTGCAGAATAAACCTCTCAATGAGCTCTTTGTGATGGATGTTGATTCCGAAGAGAAATCGAAGCAGCAGCAGCAGCAGCGATCGTCGTCTTCGCTGCCTGTGAGTTCCGGCAATGCGAAGGGAGAGGAGAGAGTGGTGATTATTGACAGTGGTGATGAGATGGATGTTGAGAAGGAGGACGGGGAGTTGGAGGAGGGGGAGATTGATTTGGATTCGGAGTCTGCCGATAACGAAAAGGCAGCTGGTGCTGGTGCTGATATGAATGTTGATAGTTCAGAGGGTGGTGTGAAGAATGAGGTGTGGGAGAAGCGAGTGAACTTGCTAAGGGAAGCATTGGAGTCTCTGACTATTACTGAGGCCGAGAAATCATTTAGAGATGTATGTCTCCGGTTTCTTGGCAGTTTGGAAAGCTTGCGAGGAGTGCTTTCGGATATAACTGTGTCTACTAAAGAAGCTCTTGTTCAGCAGTTGTTCACTGCCATACAAGCTATTAGCTCGGTTTTCTGCTCGATGAGCCCTGACCGGAAGGAGCAGAATAAAGATGTTCTAGCAAGGATACTTTCTTCTTCAAAGAGTGATCCTTCTCCTTTTTCCGCTGAGCAGCTAAAAGAGATAAAGGTGATGATATCCTCTATGGAATCCCCTGCTGTTTTCCCTCAAACTAAAGCAGGTACTAAGGGCAACGAGATACAGTCTATCAATGGGGTTAACAATATGGATTCAGATACTTCAGTTGCAAATGCCAGTCATGTGTTCACTTATTCAGCTAATAATGCTTCAGATTTTGTACCTGTATCTGTGGTTCATAGCAATCCTAATATATCATCCGAAGTTCCAAGATCAGGAACATCTAGTTTTAAGGGTAGAGGACTCATGCTACCCCTTTTAGACCTTCACATGGATCATGATGAAGATAGCCTTCCATCTCCTACACGAGAACCACCAGCAGGTTTTCCTGTCCAGAAACTATCGGTTGTTGCTGATGGGATGGTAAAAAAATCAGGGTTGGAGACAACTCGGGTGGCCCTAGATGTAGAAGGTTCAAAAATGCATGGTTATGAAACTGAGGCTCTTAAGGCTGTTTCTAGCTATCAACAAAAGTTTAGTCGGAATTCTTTTTTGACGAGTGAACTTCCAAGCCCAACCCCTTCAGAAGAGGGTGATAATGGGGATGATGATACGATTGGGGAGGTTTCTAGTTCTTCTGCGCCTAGTAATGTGAGAACTCCATGTCCCCCCATTTTGGGTCGTCAAGTTGTTTCTTCTCCTCCTCCTACCATCGTCACGGCTAGCTCTGACTTGCAAGGACCAATTACTGCAAAAAGTGCAGCCTCTGTGAGTTTGGTGTCTAATATGCCTGTTAAATCTTCAGCTAAGAGTAGAGACCCTAGGCTTCGATTTGCCAATTCTGATGTTGGTGCTTTGACCCTTAACCAACAATCCTCAATTGCGGTGCATAATGCACCTAAAGTGGATTCTGTTATCACAGTAAGCTCAAGAAAGCATAAATCCCCTGAGGAGTCTAATTTTGATGGTCCTGAATCAAAAAGACAAAGGGGTGCAAACTCAGTGGTTGGTAGGGGTGCAAAAACTTCTTTCGGAAGTGGTGGCTGGTTGGAGGACGTCAGTAGTGTTGGACCTCATTTAATTAACAGGAACCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAGTGATTAATTTTTCAAGTTCTCCTGGTACCCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAATGATTAATTTTTCAAGTTCTCCTGGTACTGTCGAAGGCAACGCCAATGCCCAAAATACTGCAAATGAGCAGGTGCCATTAATGGCTGCAAGCTCAGCTTCCTTGCCTGCATTATTGAAAGACATTGCTGTGAATCCGACCATGTTGATTAACATACTTAAGTTAGGACAACAACAAAGAGCAGCAGAAGCTCAGCAGAAGGCTGCTGTGCCTGCAGAAAGTATGACATATCCTCCGAGCTCAAGTTCAATACCTGGAGCAGCTGCATTGGTGAATGATCCTTCAAAGACATCTGGAGCTTTGCTGACACCAACCATTAGTTCACTAAAAGCTCCAACGGATGAGGCAGGAAAAGTCCGCATGAAACTCCGGGATCCTCGCCGACTTCTCCACGGTAATGCACTTCAAAAGAGTGGAAGCTTGGGACATGAACAGTTTAGAAATATTGTACCCCCAATGTCAAGCAGTCAGACAAACAAGGATGATATTAATGGGCAAAAGCAAGATAGTCAGGCAGATAACAATTTAGTGCCTCCTCAGTCAGTGGCTGTAGCAGCCCCTGACATTGCTAGCCAATTCACCAAGAATCTTAAAAATATTGCTGATATTATGTCTGTTTCCCAAGTATCTTCCCAAGTATCAACAAGTCCAGCAGTACCTTCTCAGAATCTATATACGGAACCTGTTCCAATCAACCCAGACAAAGTTGATCAGAAAGCTGAGGACCAGCATACTGTAAGTATATCTGCACCCGAACCAACTGCAGCAGGTCCATCTCGTTCGCCGGCCACATGGGGAGATGTTGAGCATCTATTTGAAGGATATGATGACAAGCAAAAAGCAGCTATCCAAAGAGAGAGAGCAAGAAGGATGGAAGAACAGAAGAAAATGTTTGCAGCACGCAAGCTGTGCCTTGTGCTGGATCTAGATCACACACTTCTAAATTCAGCTAAGTTTGTAGAAGTAGATCCAGTGCATGATGAAATTTTGAGAAAGAAAGAGGAACAGGATCGTAAAGAGCCACAAAGACATCTCTTCCGGTTTCAACATATGGGAATGTGGACCAAATTGCGGCCTGGGGTGTGGAATTTTTTAGAGAAGGCTAGTCATCTTTTTGAGATGCATCTTTACACAATGGGTAACAAGCTATATGCTACAGAAATGGCAAAAGTGCTAGATCCAACAGGGGCTCTTTTTGCTGGACGAGTTATTTCTAGAGGTGATGATGGGGATCCTTATGATGGTGATGAGAGGGTTCCTAAGAGTAAGGATCTGGAAGGAGTTTTGGGTATGGAATCAGCTGTTGTAATTATAGATGATTCTGTGAGGGTCTGGCCACATAACAAACTGAATTTGATAGTTGTAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

1148

Amino Acids

124.07

Weight (kDa)

5.16

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_CPL3	PF25505	209 - 327	2.8e-41	CPL3 ARM repeat domain
NIF	PF03031	994 - 1147	1.4e-20	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2134
AatII	GACGTC	1 cut(s)	1938
Acc36I	ACCTGC	4 cut(s)	971, 1250, 2134, 2831
Acc65I	GGTACC	1 cut(s)	2033
AccB1I	GGYRCC	2 cut(s)	2033, 2146
AccB7I	CCANNNNNTGG	2 cut(s)	1978, 2044
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	270
AciI	CCGC	7 cut(s)	207, 241, 270, 906, 1763, 2431, 3145
AcoI	YGGCCR	2 cut(s)	2859, 3407
AcsI	RAATTY	6 cut(s)	123, 1423, 3016, 3057, 3160, 3424
AcuI	CTGAAG	5 cut(s)	123, 1026, 1074, 1446, 1665
AcyI	GRCGYC	1 cut(s)	1935
AfaI	GTAC	6 cut(s)	985, 1101, 2035, 2101, 2523, 2730
AflII	CTTAAG	2 cut(s)	1385, 2231
AjnI	CCWGG	5 cut(s)	294, 2029, 2095, 2326, 3148
AjuI	GAANNNNNNNTTGG	2 cut(s)	2377, 2409
AloI	GAACNNNNNNTCC	2 cut(s)	1528, 1560
Alw21I	GWGCWC	2 cut(s)	339, 2315
Alw26I	GTCTC	4 cut(s)	657, 701, 1316, 1689
AlwNI	CAGNNNCTG	3 cut(s)	1646, 2621, 2633
Ama87I	CYCGRG	2 cut(s)	259, 1329
AoxI	GGCC	6 cut(s)	309, 669, 1335, 2859, 3146, 3407
ApoI	RAATTY	6 cut(s)	123, 1423, 3016, 3057, 3160, 3424
ArsI	GACNNNNNNTTYG	2 cut(s)	1402, 1434
AseI	ATTAAT	4 cut(s)	2013, 2079, 2153, 2562
Asp700I	GAANNNNTTC	1 cut(s)	2757
Asp718I	GGTACC	1 cut(s)	2033
AspA2I	CCTAGG	2 cut(s)	61, 1700
AspLEI	GCGC	1 cut(s)	1522
AspS9I	GGNCC	8 cut(s)	279, 1336, 1619, 1847, 1949, 2797, 2843, 3135
AsuC2I	CCSGG	3 cut(s)	260, 261, 2444
AsuHPI	GGTGA	9 cut(s)	131, 460, 476, 943, 1484, 2356, 2644, 3305, 3329
AsuNHI	GCTAGC	2 cut(s)	1601, 2642
AvaI	CYCGRG	2 cut(s)	259, 1329
AvaII	GGWCC	7 cut(s)	279, 1619, 1847, 1949, 2797, 2843, 3135
AvrII	CCTAGG	2 cut(s)	61, 1700
AxyI	CCTNAGG	1 cut(s)	1827
BaeI	ACNNNNGTAYC	2 cut(s)	1029, 1062
BalI	TGGCCA	1 cut(s)	3409
BamHI	GGATCC	3 cut(s)	14, 2446, 3304
BanI	GGYRCC	2 cut(s)	2033, 2146
BanII	GRGCYC	5 cut(s)	307, 339, 830, 2315, 3265
BauI	CACGAG	1 cut(s)	1245
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	339, 2315
BbvCI	CCTCAGC	1 cut(s)	2793
BceAI	ACGGC	2 cut(s)	296, 1614
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 2816, 2850
BciT130I	CCWGG	5 cut(s)	296, 2031, 2097, 2328, 3150
BciVI	GTATCC	1 cut(s)	861
BclI	TGATCA	1 cut(s)	2782
BcnI	CCSGG	3 cut(s)	260, 261, 2444
BcoDI	GTCTC	4 cut(s)	657, 701, 1316, 1689
BfmI	CTRYAG	4 cut(s)	2286, 2622, 2835, 3228
BfrI	CTTAAG	2 cut(s)	1385, 2231
BfuAI	ACCTGC	4 cut(s)	971, 1250, 2134, 2831
BfuI	GTATCC	1 cut(s)	861
BlnI	CCTAGG	2 cut(s)	61, 1700
BlpI	GCTNAGC	3 cut(s)	909, 2167, 2265
Bme1390I	CCNGG	8 cut(s)	260, 261, 296, 2031, 2097, 2328, 2444, 3150
Bme18I	GGWCC	7 cut(s)	279, 1619, 1847, 1949, 2797, 2843, 3135
BmeT110I	CYCGRG	2 cut(s)	259, 1329
BmgT120I	GGNCC	8 cut(s)	279, 1336, 1619, 1847, 1949, 2797, 2843, 3135
BmiI	GGNNCC	9 cut(s)	16, 280, 1970, 2035, 2148, 2448, 2754, 3306, 3330
BmrFI	CCNGG	8 cut(s)	260, 261, 296, 2031, 2097, 2328, 2444, 3150
BmsI	GCATC	5 cut(s)	208, 228, 2890, 3183, 3205
BmtI	GCTAGC	2 cut(s)	1605, 2646
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	2349, 2388
Bpu10I	CCTNAGC	3 cut(s)	306, 635, 2793
Bpu1102I	GCTNAGC	3 cut(s)	909, 2167, 2265
BpuEI	CTTGAG	2 cut(s)	1792, 2299
BpuMI	CCSGG	3 cut(s)	260, 261, 2444
BsaBI	GATNNNNATC	2 cut(s)	3000, 3303
BsaHI	GRCGYC	1 cut(s)	1935
BsaI	GGTCTC	1 cut(s)	1689
BsaJI	CCNNGG	6 cut(s)	61, 259, 260, 1700, 2464, 3149
BsaWI	WCCGGW	4 cut(s)	281, 699, 834, 3111
BsaXI	ACNNNNNCTCC	2 cut(s)	2290, 2320
Bse118I	RCCGGY	1 cut(s)	2857
Bse1I	ACTGG	2 cut(s)	1056, 3044
Bse21I	CCTNAGG	1 cut(s)	1827
Bse3DI	GCAATG	3 cut(s)	430, 2196, 2637
Bse8I	GATNNNNATC	2 cut(s)	3000, 3303
BseBI	CCWGG	5 cut(s)	296, 2031, 2097, 2328, 3150
BseDI	CCNNGG	6 cut(s)	61, 259, 260, 1700, 2464, 3149
BseJI	GATNNNNATC	2 cut(s)	3000, 3303
BseMI	GCAATG	3 cut(s)	430, 2196, 2637
BseNI	ACTGG	2 cut(s)	1056, 3044
BsgI	GTGCAG	3 cut(s)	335, 1659, 2805
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	6 cut(s)	311, 671, 1337, 2861, 3148, 3409
BshNI	GGYRCC	2 cut(s)	2033, 2146
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	339, 2315
BsiHKCI	CYCGRG	2 cut(s)	259, 1329
BsiSI	CCGG	8 cut(s)	260, 282, 420, 700, 835, 2443, 2858, 3112
BslFI	GGGAC	3 cut(s)	257, 1530, 2511
BsmAI	GTCTC	4 cut(s)	657, 701, 1316, 1689
BsmFI	GGGAC	3 cut(s)	257, 1530, 2511
BsnI	GGCC	6 cut(s)	311, 671, 1337, 2861, 3148, 3409
Bso31I	GGTCTC	1 cut(s)	1689
BsoBI	CYCGRG	2 cut(s)	259, 1329
Bsp1286I	GDGCHC	5 cut(s)	307, 339, 830, 2315, 3265
Bsp1720I	GCTNAGC	3 cut(s)	909, 2167, 2265
BspACI	CCGC	7 cut(s)	207, 241, 270, 906, 1763, 2431, 3145
BspANI	GGCC	6 cut(s)	311, 671, 1337, 2861, 3148, 3409
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	1216
BspLI	GGNNCC	9 cut(s)	16, 280, 1970, 2035, 2148, 2448, 2754, 3306, 3330
BspMAI	CTGCAG	2 cut(s)	2290, 2839
BspMI	ACCTGC	4 cut(s)	971, 1250, 2134, 2831
BspOI	GCTAGC	2 cut(s)	1605, 2646
BspT107I	GGYRCC	2 cut(s)	2033, 2146
BspTI	CTTAAG	2 cut(s)	1385, 2231
BspTNI	GGTCTC	1 cut(s)	1689
BsrDI	GCAATG	3 cut(s)	430, 2196, 2637
BsrFI	RCCGGY	1 cut(s)	2857
BsrI	ACTGG	2 cut(s)	1056, 3044
BssAI	RCCGGY	1 cut(s)	2857
BssECI	CCNNGG	6 cut(s)	61, 259, 260, 1700, 2464, 3149
BssNI	GRCGYC	1 cut(s)	1935
BssSI	CACGAG	1 cut(s)	1245
BssT1I	CCWWGG	2 cut(s)	61, 1700
Bst2BI	CACGAG	1 cut(s)	1245
Bst2UI	CCWGG	5 cut(s)	296, 2031, 2097, 2328, 3150
Bst6I	CTCTTC	3 cut(s)	357, 1461, 3113
BstACI	GRCGYC	1 cut(s)	1935
BstAFI	CTTAAG	2 cut(s)	1385, 2231
BstAPI	GCANNNNNTGC	3 cut(s)	557, 1637, 2982
BstC8I	GCNNGC	9 cut(s)	725, 1603, 2164, 2181, 2286, 2644, 2859, 2974, 2978
BstDSI	CCRYGG	1 cut(s)	2464
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	1522
BstMAI	GTCTC	4 cut(s)	657, 701, 1316, 1689
BstMCI	CGRYCG	1 cut(s)	395
BstNI	CCWGG	5 cut(s)	296, 2031, 2097, 2328, 3150
BstSCI	CCNGG	8 cut(s)	258, 259, 294, 2029, 2095, 2326, 2442, 3148
BstSFI	CTRYAG	4 cut(s)	2286, 2622, 2835, 3228
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	7 cut(s)	14, 2446, 2995, 3040, 3250, 3304, 3343
BstYI	RGATCY	7 cut(s)	14, 2446, 2995, 3040, 3250, 3304, 3343
Bsu36I	CCTNAGG	1 cut(s)	1827
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	6 cut(s)	311, 671, 1337, 2861, 3148, 3409
BtgI	CCRYGG	1 cut(s)	2464
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	7 cut(s)	147, 160, 466, 786, 1887, 2622, 3051
BveI	ACCTGC	4 cut(s)	971, 1250, 2134, 2831
Cac8I	GCNNGC	9 cut(s)	725, 1603, 2164, 2181, 2286, 2644, 2859, 2974, 2978
CaiI	CAGNNNCTG	3 cut(s)	1646, 2621, 2633
CciI	TCATGA	1 cut(s)	1216
CfoI	GCGC	1 cut(s)	1522
Cfr10I	RCCGGY	1 cut(s)	2857
Cfr13I	GGNCC	8 cut(s)	279, 1336, 1619, 1847, 1949, 2797, 2843, 3135
Cfr9I	CCCGGG	1 cut(s)	259
Csp6I	GTAC	6 cut(s)	984, 1100, 2034, 2100, 2522, 2729
CspCI	CAANNNNNGTGG	4 cut(s)	1314, 1349, 1863, 1898
CviQI	GTAC	6 cut(s)	984, 1100, 2034, 2100, 2522, 2729
EaeI	YGGCCR	2 cut(s)	2859, 3407
Eam1104I	CTCTTC	3 cut(s)	357, 1461, 3113
EarI	CTCTTC	3 cut(s)	357, 1461, 3113
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	2 cut(s)	337, 2313
Eco130I	CCWWGG	2 cut(s)	61, 1700
Eco24I	GRGCYC	5 cut(s)	307, 339, 830, 2315, 3265
Eco31I	GGTCTC	1 cut(s)	1689
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	7 cut(s)	279, 1619, 1847, 1949, 2797, 2843, 3135
Eco53kI	GAGCTC	2 cut(s)	337, 2313
Eco57I	CTGAAG	5 cut(s)	123, 1026, 1074, 1446, 1665
Eco81I	CCTNAGG	1 cut(s)	1827
Eco88I	CYCGRG	2 cut(s)	259, 1329
EcoICRI	GAGCTC	2 cut(s)	337, 2313
EcoRI	GAATTC	1 cut(s)	1423
EcoRII	CCWGG	5 cut(s)	294, 2029, 2095, 2326, 3148
EcoRV	GATATC	1 cut(s)	939
EcoT14I	CCWWGG	2 cut(s)	61, 1700
EcoT22I	ATGCAT	2 cut(s)	1365, 3198
EcoT38I	GRGCYC	5 cut(s)	307, 339, 830, 2315, 3265
ErhI	CCWWGG	2 cut(s)	61, 1700
FalI	AAGNNNNNCTT	6 cut(s)	753, 785, 1215, 1247, 2155, 2187
FaqI	GGGAC	3 cut(s)	257, 1530, 2511
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	3123
FbaI	TGATCA	1 cut(s)	2782
FblI	GTMKAC	1 cut(s)	755
FriOI	GRGCYC	5 cut(s)	307, 339, 830, 2315, 3265
GlaI	GCGC	1 cut(s)	1521
GsuI	CTGGAG	2 cut(s)	2349, 2388
HaeIII	GGCC	6 cut(s)	311, 671, 1337, 2861, 3148, 3409
HapII	CCGG	8 cut(s)	260, 282, 420, 700, 835, 2443, 2858, 3112
HhaI	GCGC	1 cut(s)	1522
Hin1I	GRCGYC	1 cut(s)	1935
Hin6I	GCGC	1 cut(s)	1520
HinP1I	GCGC	1 cut(s)	1520
HincII	GTYRAC	2 cut(s)	292, 1021
HindII	GTYRAC	2 cut(s)	292, 1021
HindIII	AAGCTT	2 cut(s)	721, 2491
HpaI	GTTAAC	2 cut(s)	292, 1021
HpaII	CCGG	8 cut(s)	260, 282, 420, 700, 835, 2443, 2858, 3112
HphI	GGTGA	9 cut(s)	131, 460, 476, 943, 1484, 2356, 2644, 3305, 3329
Hpy166II	GTNNAC	9 cut(s)	292, 628, 756, 786, 1021, 1068, 1442, 2396, 3135
Hpy188III	TCNNGA	9 cut(s)	1155, 1217, 1273, 1809, 1850, 2367, 2999, 3288, 3347
Hpy8I	GTNNAC	9 cut(s)	292, 628, 756, 786, 1021, 1068, 1442, 2396, 3135
Hpy99I	CGWCG	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	1935
HpySE526I	ACGT	1 cut(s)	1935
Hsp92I	GRCGYC	1 cut(s)	1935
HspAI	GCGC	1 cut(s)	1520
KpnI	GGTACC	1 cut(s)	2037
KroI	GCCGGC	1 cut(s)	2857
KroNI	GCCGGC	1 cut(s)	2859
Ksp22I	TGATCA	1 cut(s)	2782
KspAI	GTTAAC	2 cut(s)	292, 1021
LmnI	GCTCC	4 cut(s)	841, 2330, 2369, 2410
LweI	GCATC	5 cut(s)	208, 228, 2890, 3183, 3205
MaeII	ACGT	1 cut(s)	1935
MaeIII	GTNAC	2 cut(s)	1594, 3212
MfeI	CAATTG	3 cut(s)	19, 37, 1758
MflI	RGATCY	7 cut(s)	14, 2446, 2995, 3040, 3250, 3304, 3343
MhlI	GDGCHC	5 cut(s)	307, 339, 830, 2315, 3265
MlsI	TGGCCA	1 cut(s)	3409
MluNI	TGGCCA	1 cut(s)	3409
MlyI	GAGTC	4 cut(s)	539, 659, 1176, 1841
MmeI	TCCRAC	8 cut(s)	480, 1299, 1400, 1908, 1927, 2234, 2432, 3278
Mox20I	TGGCCA	1 cut(s)	3409
Mph1103I	ATGCAT	2 cut(s)	1365, 3198
MroNI	GCCGGC	1 cut(s)	2857
MroXI	GAANNNNTTC	1 cut(s)	2757
MscI	TGGCCA	1 cut(s)	3409
MslI	CAYNNNNRTG	3 cut(s)	1368, 2201, 2469
Msp20I	TGGCCA	1 cut(s)	3409
MspA1I	CMGCKG	4 cut(s)	554, 908, 2336, 3374
MspCI	CTTAAG	2 cut(s)	1385, 2231
MspI	CCGG	8 cut(s)	260, 282, 420, 700, 835, 2443, 2858, 3112
MspR9I	CCNGG	8 cut(s)	260, 261, 296, 2031, 2097, 2328, 2444, 3150
MunI	CAATTG	3 cut(s)	19, 37, 1758
MvaI	CCWGG	5 cut(s)	296, 2031, 2097, 2328, 3150
MvnI	CGCG	1 cut(s)	270
NaeI	GCCGGC	1 cut(s)	2859
NciI	CCSGG	3 cut(s)	260, 261, 2444
NdeI	CATATG	1 cut(s)	3123
NgoMIV	GCCGGC	1 cut(s)	2857
NheI	GCTAGC	2 cut(s)	1601, 2642
NlaIV	GGNNCC	9 cut(s)	16, 280, 1970, 2035, 2148, 2448, 2754, 3306, 3330
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	1594
NsiI	ATGCAT	2 cut(s)	1365, 3198
PacI	TTAATTAA	1 cut(s)	1962
PagI	TCATGA	1 cut(s)	1216
PaqCI	CACCTGC	1 cut(s)	2134
PdiI	GCCGGC	1 cut(s)	2859
PdmI	GAANNNNTTC	1 cut(s)	2757
PflMI	CCANNNNNTGG	2 cut(s)	1978, 2044
PfoI	TCCNGGA	1 cut(s)	2442
Ple19I	CGATCG	1 cut(s)	395
PleI	GAGTC	4 cut(s)	538, 658, 1176, 1840
PpsI	GAGTC	4 cut(s)	538, 658, 1176, 1840
PshBI	ATTAAT	4 cut(s)	2013, 2079, 2153, 2562
Psp124BI	GAGCTC	2 cut(s)	339, 2315
Psp6I	CCWGG	5 cut(s)	294, 2029, 2095, 2326, 3148
PspGI	CCWGG	5 cut(s)	294, 2029, 2095, 2326, 3148
PspN4I	GGNNCC	9 cut(s)	16, 280, 1970, 2035, 2148, 2448, 2754, 3306, 3330
PspPI	GGNCC	8 cut(s)	279, 1336, 1619, 1847, 1949, 2797, 2843, 3135
PsrI	GAACNNNNNNTAC	2 cut(s)	1098, 1130
PstI	CTGCAG	2 cut(s)	2290, 2839
PstNI	CAGNNNCTG	3 cut(s)	1646, 2621, 2633
PsuI	RGATCY	7 cut(s)	14, 2446, 2995, 3040, 3250, 3304, 3343
PvuI	CGATCG	1 cut(s)	395
PvuII	CAGCTG	3 cut(s)	554, 2336, 3374
RsaI	GTAC	6 cut(s)	985, 1101, 2035, 2101, 2523, 2730
RsaNI	GTAC	6 cut(s)	984, 1100, 2034, 2100, 2522, 2729
RseI	CAYNNNNRTG	3 cut(s)	1368, 2201, 2469
SacI	GAGCTC	2 cut(s)	339, 2315
Sau96I	GGNCC	8 cut(s)	279, 1336, 1619, 1847, 1949, 2797, 2843, 3135
SchI	GAGTC	4 cut(s)	539, 659, 1176, 1841
ScrFI	CCNGG	8 cut(s)	260, 261, 296, 2031, 2097, 2328, 2444, 3150
SduI	GDGCHC	5 cut(s)	307, 339, 830, 2315, 3265
SfaNI	GCATC	5 cut(s)	208, 228, 2890, 3183, 3205
SfcI	CTRYAG	4 cut(s)	2286, 2622, 2835, 3228
SinI	GGWCC	7 cut(s)	279, 1619, 1847, 1949, 2797, 2843, 3135
SmaI	CCCGGG	1 cut(s)	261
SmiMI	CAYNNNNRTG	3 cut(s)	1368, 2201, 2469
SmlI	CTYRAG	4 cut(s)	1385, 1807, 2231, 2314
SmoI	CTYRAG	4 cut(s)	1385, 1807, 2231, 2314
SsiI	CCGC	7 cut(s)	207, 241, 270, 906, 1763, 2431, 3145
SspI	AATATT	2 cut(s)	2518, 2671
SstI	GAGCTC	2 cut(s)	339, 2315
StyD4I	CCNGG	8 cut(s)	258, 259, 294, 2029, 2095, 2326, 2442, 3148
StyI	CCWWGG	2 cut(s)	61, 1700
TaiI	ACGT	1 cut(s)	1938
TaqI	TCGA	6 cut(s)	51, 134, 371, 821, 1708, 2106
TauI	GCSGC	2 cut(s)	273, 3148
TscAI	CASTG	7 cut(s)	147, 160, 466, 793, 1887, 2622, 3051
TseFI	GTSAC	1 cut(s)	1594
Tsp45I	GTSAC	1 cut(s)	1594
TspDTI	ATGAA	7 cut(s)	587, 1106, 1236, 1386, 2450, 2517, 3069
TspGWI	ACGGA	2 cut(s)	2426, 2765
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	7 cut(s)	147, 160, 466, 793, 1887, 2622, 3051
Van91I	CCANNNNNTGG	2 cut(s)	1978, 2044
Vha464I	CTTAAG	2 cut(s)	1385, 2231
VpaK11BI	GGWCC	7 cut(s)	279, 1619, 1847, 1949, 2797, 2843, 3135
VspI	ATTAAT	4 cut(s)	2013, 2079, 2153, 2562
XapI	RAATTY	6 cut(s)	123, 1423, 3016, 3057, 3160, 3424
XbaI	TCTAGA	2 cut(s)	2998, 3287
XmaI	CCCGGG	1 cut(s)	259
XmaJI	CCTAGG	2 cut(s)	61, 1700
XmiI	GTMKAC	1 cut(s)	755
XmnI	GAANNNNTTC	1 cut(s)	2757
ZraI	GACGTC	1 cut(s)	1936
Zsp2I	ATGCAT	2 cut(s)	1365, 3198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.