Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000846.1

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Forward (+)

58577 .. 63608

Gene Structure 5032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000846.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3792 bp

atgggcaaggatgagagtagcaaagaggtcggggatgttgaagaaggtgaaatttccgattcgacttcagtggaggagatcagtgaggaggattttgttaagcaggaattgaaggttgagccgaaatccaatggcggaggaggaggaggagatgctggtagggtttggacgatgcgggacatctacaactacccggggtttcgcggctacgggtccggtctggttaacctggcttgggctcaggccgtgcagaataaacctctcaatgagctctttgtgatggatgttgattccgaagagaaatcgaagcagcagcagcagcagcagcgatcgtcgtcttcgctgccggtgagttccggcaatgcgaagggggaggagagagtggtgattattgacagtggtgatgagatggatgttgagaaggaggacggggagttggaggagggggagattgatttggattcggagtctgccgataacgaaaaggcagctgcagctgctgctggtgctgatatgaatgttgatagttcagagggtggtgtgaaggagaagcgagtgaacttgctaagggaagcattggagtctctgactattactgaggccgagaaatcatttagagatgtatgtctccggtttcttggcagtttggaaagcttgcgaggagtgctttcggatataagtgtgtctactaaagaagctcttgttcagcagttgttcactgctgtacaagctattagctcggttttctgctcgatgagccctgaccggaaggagcagaataaagatgttctagcaaggatactttcttcttcaaagagtgatccttctcctttttccgctgagcagctaaaagagatagaggtgatgatatcctctatggaatcccctgctgttttccctcaaactaaagcaggtactcagggcaacgagatacagtctattaatggggttaacaatatggattcagatacttcagttgcaaatgccagtcatgtgttcacttattcagctaataatgcttcagattttgcacctgtatctgtggttcatagcaatcctaatatatcatccgaagttccaagatcaggaacatctagttttaagggtagaggactcatgctaccccttttagaccttcacatggatcatgatgaagatagccttccatctcctacacgagaaccgccagcaggttttcctgtccagaaactatcggttgttgctgatgggatggtaaaaaaatcagggttggagacaactcgggtggccctagatgtagaaggttcaaaaatgcatggttatgaaactgaggctcttaaggctgtttctagctatcaacaaaagtttagtcggaattcttttttgacgagtgaacttccaagcccaaccccttcagaagagggtgatagtggggatgatgatacgattggggaggtttctagttcttctgcgcctagtaatgtgagaacttcccgtccccccattttgggtcggcaagttgtttcttctcctcctcctcctaccatcgtcatggctagctctgacttgcaaggaccaattactgcaaaaagtgcagcctctgtgagtttggtgtctaatatgcctgttaaatcttcagctaagagtagagaccctaggcttcggtttgccaattctgatgttggtgctttgacccttaaccaacaatcctcaattgcggtgcataatgcacctaaagtggattctgttatcacagtaagctcaagaaagcataaatcccctgaggagtctaattttgatggtcctgaatcaaaaagacaaaggggtgcaaactcagtggttggtaggggtgcaaaaacttctttcggaagtggtggctggttggaggacatcagtagtgttggacctcatttaattaacaggaaccagactgtggagaaaaaagaagctgatcccagaaaagtgattaatttttcaagttctcctggtactgtcgaaggcaacgccagtgcccaaaatactgcaaatgagcaggtgccattaatggctgcaagctcagcttccttgcctgcattattgaaagatattgctgtgaatccgaccatgttgattaacatacttaagttaggacaacaacaaagagcagcagaagctcagcagaaggctgctgtgcccgcagaaagtatgacatatcctccgagctcaagttcaatacctggagcacctgcattggtgaatgatccttcaaagatatctggagctttgctgacaccaaccattagttcacaaaaagctccaacggatgaggcaggaaaagtccgcatgaaactccgggatcctcgccgacttctccatggtaatgcacttcaaaagagtggaagcttgggacatgaacagtttagaaatattgtacccccaatgtcaggcagtcagacaaacaaggatgatattaatgggcaaaagcaagatagtcaggcagataacaatttagtgcctccacagtcagtggctgtagcagcccctgacattgctagccaattcaccaagaatcttaaaaatattgctgatattatgtctgtttcccaagcatcttcccaagtatcaacaagtccagcagtaccttctcagaatctatctacggaacctgttccaatcaacccagacaaagttgatcagaaagctgaggaccagcatactgtaagtatatctgcacccgaaccaactgcagcaggtccatctcgttcgccggccacgtggggagatgttgagcatctatttgaaggatatgatgacaagcaaaaagcagctatccaaagagagagagcaagaaggatggaagaacagaagaaaatgtttgcagcacgcaagctgtgccttgtgctggatctagatcacacacttcttaattccgctaagtttgtagaagtagatccagtgcatgatgaaattttgagaaagaaagaggaacaggatcgtaaagagccacaaagacatctcttccggtttcaacatatgggaatgtggaccaaattgcggcctggggtgtggaattttttagagaaggctagtcatctttttgagatgcatctttacacaatgggtaacaagctatatgctacagaaatggcaaaagtgctagatccaacaggggctctttttgctggacgagttatttctagaggtgatgatggggatccttatgatggtgatgagagggttcctaagagtaaggatctggaaggagttttgggtatggaatcagctgttgtaattatagatgattctgtgagggtctggccacataacaaactgaatttgatagttgtagaaaggtatacctactttccttgtagcagacggcaatttgggcttctaggtccttccctgctagagattgatcatgatgagagacatgaagatggaactctggcatcctcattggcggttattgaaaagatacatcagatcttcttctcccatccttccctagatgaagcagatgttagaaatattctggcctctgagcagcaaaagattttgggtggttgtcgtatagtatttagcagggtatttccagttggtgaggtcaatcctcacctacatcctttgtggcagacagctgaacagtttggtgctgtgtgcaccaaccagatagatgatcaggttacccatgtagttgcgaattctcttgggactgacaaggtgaattgggcactttcttctggaaaatatgttgtgcatcctggctgggtggaagcgtcagctttgctttatcggagggcaaatgagcaagattttgccattaaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

1263

Amino Acids

136.8

Weight (kDa)

5.23

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2002, 2212
Acc36I	ACCTGC	5 cut(s)	902, 1181, 2002, 2212, 2699
AccB1I	GGYRCC	1 cut(s)	2014
AccB7I	CCANNNNNTGG	1 cut(s)	1912
AccI	GTMKAC	2 cut(s)	686, 3314
AccII	CGCG	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	2727, 3275
AcsI	RAATTY	6 cut(s)	51, 1354, 2925, 3028, 3292, 3661
AcuI	CTGAAG	5 cut(s)	51, 957, 1005, 1377, 1599
AcvI	CACGTG	1 cut(s)	2733
AfaI	GTAC	5 cut(s)	726, 916, 1969, 2391, 2598
AflII	CTTAAG	2 cut(s)	1316, 2099
AjnI	CCWGG	5 cut(s)	228, 1963, 2194, 3016, 3721
AjuI	GAANNNNNNNTTGG	2 cut(s)	2245, 2277
AloI	GAACNNNNNNTCC	2 cut(s)	1459, 1491
Alw21I	GWGCWC	4 cut(s)	273, 2183, 2203, 3623
Alw26I	GTCTC	5 cut(s)	588, 632, 1247, 1623, 3382
Alw44I	GTGCAC	1 cut(s)	3619
AlwNI	CAGNNNCTG	4 cut(s)	500, 1580, 2489, 2501
Ama87I	CYCGRG	2 cut(s)	193, 1260
AoxI	GGCC	7 cut(s)	243, 600, 1266, 2727, 3014, 3275, 3495
ApaLI	GTGCAC	1 cut(s)	3619
ApoI	RAATTY	6 cut(s)	51, 1354, 2925, 3028, 3292, 3661
ArsI	GACNNNNNNTTYG	2 cut(s)	1333, 1365
AseI	ATTAAT	4 cut(s)	942, 1947, 2021, 2430
Asp700I	GAANNNNTTC	1 cut(s)	2625
AspA2I	CCTAGG	1 cut(s)	1634
AspLEI	GCGC	1 cut(s)	1453
AspS9I	GGNCC	9 cut(s)	213, 1267, 1553, 1781, 1883, 2665, 2711, 3003, 3356
AsuC2I	CCSGG	3 cut(s)	194, 195, 2312
AsuNHI	GCTAGC	2 cut(s)	1535, 2510
AvaI	CYCGRG	2 cut(s)	193, 1260
AvaII	GGWCC	8 cut(s)	213, 1553, 1781, 1883, 2665, 2711, 3003, 3356
AvrII	CCTAGG	1 cut(s)	1634
AxyI	CCTNAGG	1 cut(s)	1761
BaeGI	GKGCMC	4 cut(s)	1993, 2154, 3623, 3694
BaeI	ACNNNNGTAYC	2 cut(s)	960, 993
BalI	TGGCCA	1 cut(s)	3277
BamHI	GGATCC	2 cut(s)	2314, 3172
BanI	GGYRCC	1 cut(s)	2014
BanII	GRGCYC	5 cut(s)	241, 273, 761, 2183, 3133
BauI	CACGAG	1 cut(s)	1176
BbrPI	CACGTG	1 cut(s)	2733
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	4 cut(s)	273, 2183, 2203, 3623
BbvCI	CCTCAGC	1 cut(s)	2661
BceAI	ACGGC	2 cut(s)	230, 3353
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 2684, 2718
BciT130I	CCWGG	5 cut(s)	230, 1965, 2196, 3018, 3723
BciVI	GTATCC	1 cut(s)	792
BclI	TGATCA	3 cut(s)	2650, 3376, 3637
BcnI	CCSGG	3 cut(s)	194, 195, 2312
BcoDI	GTCTC	5 cut(s)	588, 632, 1247, 1623, 3382
BfmI	CTRYAG	4 cut(s)	492, 2490, 2703, 3096
BfrI	CTTAAG	2 cut(s)	1316, 2099
BfuAI	ACCTGC	5 cut(s)	902, 1181, 2002, 2212, 2699
BfuI	GTATCC	1 cut(s)	792
BglII	AGATCT	1 cut(s)	3444
BlnI	CCTAGG	1 cut(s)	1634
BlpI	GCTNAGC	3 cut(s)	840, 2035, 2133
Bme1390I	CCNGG	8 cut(s)	194, 195, 230, 1965, 2196, 2312, 3018, 3723
Bme18I	GGWCC	8 cut(s)	213, 1553, 1781, 1883, 2665, 2711, 3003, 3356
BmeT110I	CYCGRG	2 cut(s)	193, 1260
BmgT120I	GGNCC	9 cut(s)	213, 1267, 1553, 1781, 1883, 2665, 2711, 3003, 3356
BmiI	GGNNCC	7 cut(s)	214, 1904, 2016, 2316, 2622, 3174, 3198
BmrFI	CCNGG	8 cut(s)	194, 195, 230, 1965, 2196, 2312, 3018, 3723
BmsI	GCATC	8 cut(s)	142, 162, 2576, 2758, 3051, 3073, 3419, 3727
BmtI	GCTAGC	2 cut(s)	1539, 2514
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	2 cut(s)	2217, 2256
Bpu10I	CCTNAGC	3 cut(s)	240, 566, 2661
Bpu1102I	GCTNAGC	3 cut(s)	840, 2035, 2133
BpuEI	CTTGAG	2 cut(s)	1726, 2167
BpuMI	CCSGG	3 cut(s)	194, 195, 2312
BsaAI	YACGTR	1 cut(s)	2733
BsaBI	GATNNNNATC	2 cut(s)	2868, 3171
BsaI	GGTCTC	1 cut(s)	1623
BsaJI	CCNNGG	5 cut(s)	193, 194, 1634, 2332, 3017
BsaWI	WCCGGW	4 cut(s)	215, 630, 765, 2979
BsaXI	ACNNNNNCTCC	2 cut(s)	2158, 2188
Bse118I	RCCGGY	2 cut(s)	346, 2725
Bse1I	ACTGG	4 cut(s)	987, 1986, 2912, 3554
Bse21I	CCTNAGG	1 cut(s)	1761
Bse3DI	GCAATG	2 cut(s)	367, 2505
Bse8I	GATNNNNATC	2 cut(s)	2868, 3171
BseBI	CCWGG	5 cut(s)	230, 1965, 2196, 3018, 3723
BseDI	CCNNGG	5 cut(s)	193, 194, 1634, 2332, 3017
BseJI	GATNNNNATC	2 cut(s)	2868, 3171
BseMI	GCAATG	2 cut(s)	367, 2505
BseNI	ACTGG	4 cut(s)	987, 1986, 2912, 3554
BseSI	GKGCMC	4 cut(s)	1993, 2154, 3623, 3694
BseYI	CCCAGC	1 cut(s)	3726
BsgI	GTGCAG	3 cut(s)	269, 1593, 2673
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	7 cut(s)	245, 602, 1268, 2729, 3016, 3277, 3497
BshNI	GGYRCC	1 cut(s)	2014
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	4 cut(s)	273, 2183, 2203, 3623
BsiHKCI	CYCGRG	2 cut(s)	193, 1260
BsiSI	CCGG	9 cut(s)	194, 216, 347, 357, 631, 766, 2311, 2726, 2980
BslFI	GGGAC	4 cut(s)	191, 1461, 2379, 3685
BsmAI	GTCTC	5 cut(s)	588, 632, 1247, 1623, 3382
BsmFI	GGGAC	4 cut(s)	191, 1461, 2379, 3685
BsnI	GGCC	7 cut(s)	245, 602, 1268, 2729, 3016, 3277, 3497
Bso31I	GGTCTC	1 cut(s)	1623
BsoBI	CYCGRG	2 cut(s)	193, 1260
Bsp1407I	TGTACA	1 cut(s)	724
Bsp1720I	GCTNAGC	3 cut(s)	840, 2035, 2133
Bsp19I	CCATGG	1 cut(s)	2332
BspANI	GGCC	7 cut(s)	245, 602, 1268, 2729, 3016, 3277, 3497
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	2 cut(s)	1147, 3379
BspLI	GGNNCC	7 cut(s)	214, 1904, 2016, 2316, 2622, 3174, 3198
BspMAI	CTGCAG	2 cut(s)	496, 2707
BspMI	ACCTGC	5 cut(s)	902, 1181, 2002, 2212, 2699
BspOI	GCTAGC	2 cut(s)	1539, 2514
BspT107I	GGYRCC	1 cut(s)	2014
BspTI	CTTAAG	2 cut(s)	1316, 2099
BspTNI	GGTCTC	1 cut(s)	1623
BsrDI	GCAATG	2 cut(s)	367, 2505
BsrFI	RCCGGY	2 cut(s)	346, 2725
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	4 cut(s)	987, 1986, 2912, 3554
BssAI	RCCGGY	2 cut(s)	346, 2725
BssECI	CCNNGG	5 cut(s)	193, 194, 1634, 2332, 3017
BssNAI	GTATAC	1 cut(s)	3315
BssSI	CACGAG	1 cut(s)	1176
BssT1I	CCWWGG	2 cut(s)	1634, 2332
Bst1107I	GTATAC	1 cut(s)	3315
Bst2BI	CACGAG	1 cut(s)	1176
Bst2UI	CCWGG	5 cut(s)	230, 1965, 2196, 3018, 3723
Bst4CI	ACNGT	9 cut(s)	398, 936, 1735, 1912, 1972, 2376, 2481, 2677, 3606
Bst6I	CTCTTC	3 cut(s)	291, 1392, 2981
BstAFI	CTTAAG	2 cut(s)	1316, 2099
BstAPI	GCANNNNNTGC	3 cut(s)	500, 1571, 2850
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	2733
BstDSI	CCRYGG	1 cut(s)	2332
BstEII	GGTNACC	1 cut(s)	3643
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	1453
BstMAI	GTCTC	5 cut(s)	588, 632, 1247, 1623, 3382
BstMCI	CGRYCG	1 cut(s)	332
BstNI	CCWGG	5 cut(s)	230, 1965, 2196, 3018, 3723
BstPI	GGTNACC	1 cut(s)	3643
BstSCI	CCNGG	8 cut(s)	192, 193, 228, 1963, 2194, 2310, 3016, 3721
BstSFI	CTRYAG	4 cut(s)	492, 2490, 2703, 3096
BstSLI	GKGCMC	4 cut(s)	1993, 2154, 3623, 3694
BstUI	CGCG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	7 cut(s)	2314, 2863, 2908, 3118, 3172, 3211, 3444
BstXI	CCANNNNNNTGG	1 cut(s)	1531
BstYI	RGATCY	7 cut(s)	2314, 2863, 2908, 3118, 3172, 3211, 3444
BstZ17I	GTATAC	1 cut(s)	3315
Bsu36I	CCTNAGG	1 cut(s)	1761
BsuI	GTATCC	1 cut(s)	792
BsuRI	GGCC	7 cut(s)	245, 602, 1268, 2729, 3016, 3277, 3497
BtgI	CCRYGG	1 cut(s)	2332
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	8 cut(s)	75, 88, 403, 717, 1821, 1993, 2490, 2919
BveI	ACCTGC	5 cut(s)	902, 1181, 2002, 2212, 2699
CaiI	CAGNNNCTG	4 cut(s)	500, 1580, 2489, 2501
CciI	TCATGA	2 cut(s)	1147, 3379
CfoI	GCGC	1 cut(s)	1453
Cfr10I	RCCGGY	2 cut(s)	346, 2725
Cfr13I	GGNCC	9 cut(s)	213, 1267, 1553, 1781, 1883, 2665, 2711, 3003, 3356
Cfr9I	CCCGGG	1 cut(s)	193
CseI	GACGC	1 cut(s)	3726
Csp6I	GTAC	5 cut(s)	725, 915, 1968, 2390, 2597
CspCI	CAANNNNNGTGG	4 cut(s)	1245, 1280, 1797, 1832
CviQI	GTAC	5 cut(s)	725, 915, 1968, 2390, 2597
EaeI	YGGCCR	2 cut(s)	2727, 3275
Eam1104I	CTCTTC	3 cut(s)	291, 1392, 2981
EarI	CTCTTC	3 cut(s)	291, 1392, 2981
EciI	GGCGGA	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	271, 2181
Eco130I	CCWWGG	2 cut(s)	1634, 2332
Eco24I	GRGCYC	5 cut(s)	241, 273, 761, 2183, 3133
Eco31I	GGTCTC	1 cut(s)	1623
Eco32I	GATATC	2 cut(s)	870, 2232
Eco47I	GGWCC	8 cut(s)	213, 1553, 1781, 1883, 2665, 2711, 3003, 3356
Eco53kI	GAGCTC	2 cut(s)	271, 2181
Eco57I	CTGAAG	5 cut(s)	51, 957, 1005, 1377, 1599
Eco72I	CACGTG	1 cut(s)	2733
Eco81I	CCTNAGG	1 cut(s)	1761
Eco88I	CYCGRG	2 cut(s)	193, 1260
Eco91I	GGTNACC	1 cut(s)	3643
EcoICRI	GAGCTC	2 cut(s)	271, 2181
EcoO109I	RGGNCCY	1 cut(s)	3356
EcoO65I	GGTNACC	1 cut(s)	3643
EcoRI	GAATTC	2 cut(s)	1354, 3661
EcoRII	CCWGG	5 cut(s)	228, 1963, 2194, 3016, 3721
EcoRV	GATATC	2 cut(s)	870, 2232
EcoT14I	CCWWGG	2 cut(s)	1634, 2332
EcoT22I	ATGCAT	2 cut(s)	1296, 3066
EcoT38I	GRGCYC	5 cut(s)	241, 273, 761, 2183, 3133
ErhI	CCWWGG	2 cut(s)	1634, 2332
FalI	AAGNNNNNCTT	6 cut(s)	684, 716, 1146, 1178, 2023, 2055
FaqI	GGGAC	4 cut(s)	191, 1461, 2379, 3685
FauI	CCCGC	2 cut(s)	168, 2161
FauNDI	CATATG	1 cut(s)	2991
FbaI	TGATCA	3 cut(s)	2650, 3376, 3637
FblI	GTMKAC	2 cut(s)	686, 3314
FriOI	GRGCYC	5 cut(s)	241, 273, 761, 2183, 3133
GlaI	GCGC	1 cut(s)	1452
GsaI	CCCAGC	1 cut(s)	3730
GsuI	CTGGAG	2 cut(s)	2217, 2256
HaeIII	GGCC	7 cut(s)	245, 602, 1268, 2729, 3016, 3277, 3497
HapII	CCGG	9 cut(s)	194, 216, 347, 357, 631, 766, 2311, 2726, 2980
HgaI	GACGC	1 cut(s)	3726
HhaI	GCGC	1 cut(s)	1453
Hin6I	GCGC	1 cut(s)	1451
HinP1I	GCGC	1 cut(s)	1451
HincII	GTYRAC	2 cut(s)	226, 952
HindII	GTYRAC	2 cut(s)	226, 952
HindIII	AAGCTT	2 cut(s)	652, 2359
HpaI	GTTAAC	2 cut(s)	226, 952
HpaII	CCGG	9 cut(s)	194, 216, 347, 357, 631, 766, 2311, 2726, 2980
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	9 cut(s)	398, 936, 1735, 1912, 1972, 2376, 2481, 2677, 3606
HpyCH4IV	ACGT	1 cut(s)	2732
HpySE526I	ACGT	1 cut(s)	2732
HspAI	GCGC	1 cut(s)	1451
KroI	GCCGGC	1 cut(s)	2725
KroNI	GCCGGC	1 cut(s)	2727
Ksp22I	TGATCA	3 cut(s)	2650, 3376, 3637
KspAI	GTTAAC	2 cut(s)	226, 952
LmnI	GCTCC	4 cut(s)	772, 2198, 2237, 2278
LweI	GCATC	8 cut(s)	142, 162, 2576, 2758, 3051, 3073, 3419, 3727
MaeII	ACGT	1 cut(s)	2732
MaeIII	GTNAC	2 cut(s)	3080, 3643
MfeI	CAATTG	1 cut(s)	1692
MflI	RGATCY	7 cut(s)	2314, 2863, 2908, 3118, 3172, 3211, 3444
MlsI	TGGCCA	1 cut(s)	3277
MluNI	TGGCCA	1 cut(s)	3277
MlyI	GAGTC	4 cut(s)	476, 590, 1107, 1775
MmeI	TCCRAC	8 cut(s)	417, 1230, 1331, 1842, 1861, 2102, 2300, 3146
Mox20I	TGGCCA	1 cut(s)	3277
Mph1103I	ATGCAT	2 cut(s)	1296, 3066
MroNI	GCCGGC	1 cut(s)	2725
MroXI	GAANNNNTTC	1 cut(s)	2625
MscI	TGGCCA	1 cut(s)	3277
MslI	CAYNNNNRTG	4 cut(s)	1299, 1529, 2337, 3396
Msp20I	TGGCCA	1 cut(s)	3277
MspA1I	CMGCKG	5 cut(s)	491, 497, 839, 3242, 3599
MspCI	CTTAAG	2 cut(s)	1316, 2099
MspI	CCGG	9 cut(s)	194, 216, 347, 357, 631, 766, 2311, 2726, 2980
MspR9I	CCNGG	8 cut(s)	194, 195, 230, 1965, 2196, 2312, 3018, 3723
MunI	CAATTG	1 cut(s)	1692
MvaI	CCWGG	5 cut(s)	230, 1965, 2196, 3018, 3723
MvnI	CGCG	1 cut(s)	204
NaeI	GCCGGC	1 cut(s)	2727
NciI	CCSGG	3 cut(s)	194, 195, 2312
NcoI	CCATGG	1 cut(s)	2332
NdeI	CATATG	1 cut(s)	2991
NgoMIV	GCCGGC	1 cut(s)	2725
NheI	GCTAGC	2 cut(s)	1535, 2510
NlaIV	GGNNCC	7 cut(s)	214, 1904, 2016, 2316, 2622, 3174, 3198
NmeAIII	GCCGAG	1 cut(s)	628
NsiI	ATGCAT	2 cut(s)	1296, 3066
PacI	TTAATTAA	1 cut(s)	1896
PagI	TCATGA	2 cut(s)	1147, 3379
PaqCI	CACCTGC	2 cut(s)	2002, 2212
PcsI	WCGNNNNNNNCGW	1 cut(s)	2729
PdiI	GCCGGC	1 cut(s)	2727
PdmI	GAANNNNTTC	1 cut(s)	2625
PflMI	CCANNNNNTGG	1 cut(s)	1912
PfoI	TCCNGGA	1 cut(s)	2310
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	4 cut(s)	475, 589, 1107, 1774
PmaCI	CACGTG	1 cut(s)	2733
PmlI	CACGTG	1 cut(s)	2733
PpsI	GAGTC	4 cut(s)	475, 589, 1107, 1774
Ppu21I	YACGTR	1 cut(s)	2733
PpuMI	RGGWCCY	1 cut(s)	3356
PshBI	ATTAAT	4 cut(s)	942, 1947, 2021, 2430
Psp124BI	GAGCTC	2 cut(s)	273, 2183
Psp5II	RGGWCCY	1 cut(s)	3356
Psp6I	CCWGG	5 cut(s)	228, 1963, 2194, 3016, 3721
PspCI	CACGTG	1 cut(s)	2733
PspEI	GGTNACC	1 cut(s)	3643
PspFI	CCCAGC	1 cut(s)	3726
PspGI	CCWGG	5 cut(s)	228, 1963, 2194, 3016, 3721
PspN4I	GGNNCC	7 cut(s)	214, 1904, 2016, 2316, 2622, 3174, 3198
PspPI	GGNCC	9 cut(s)	213, 1267, 1553, 1781, 1883, 2665, 2711, 3003, 3356
PspPPI	RGGWCCY	1 cut(s)	3356
PsrI	GAACNNNNNNTAC	2 cut(s)	1029, 1061
PstI	CTGCAG	2 cut(s)	496, 2707
PstNI	CAGNNNCTG	4 cut(s)	500, 1580, 2489, 2501
PsuI	RGATCY	7 cut(s)	2314, 2863, 2908, 3118, 3172, 3211, 3444
PvuI	CGATCG	1 cut(s)	332
PvuII	CAGCTG	4 cut(s)	491, 497, 3242, 3599
RsaI	GTAC	5 cut(s)	726, 916, 1969, 2391, 2598
RsaNI	GTAC	5 cut(s)	725, 915, 1968, 2390, 2597
RseI	CAYNNNNRTG	4 cut(s)	1299, 1529, 2337, 3396
SacI	GAGCTC	2 cut(s)	273, 2183
Sau96I	GGNCC	9 cut(s)	213, 1267, 1553, 1781, 1883, 2665, 2711, 3003, 3356
SchI	GAGTC	4 cut(s)	476, 590, 1107, 1775
ScrFI	CCNGG	8 cut(s)	194, 195, 230, 1965, 2196, 2312, 3018, 3723
SfaNI	GCATC	8 cut(s)	142, 162, 2576, 2758, 3051, 3073, 3419, 3727
SfcI	CTRYAG	4 cut(s)	492, 2490, 2703, 3096
SinI	GGWCC	8 cut(s)	213, 1553, 1781, 1883, 2665, 2711, 3003, 3356
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	4 cut(s)	1299, 1529, 2337, 3396
SmlI	CTYRAG	4 cut(s)	1316, 1741, 2099, 2182
SmoI	CTYRAG	4 cut(s)	1316, 1741, 2099, 2182
SspI	AATATT	3 cut(s)	2386, 2539, 3490
SstI	GAGCTC	2 cut(s)	273, 2183
StyD4I	CCNGG	8 cut(s)	192, 193, 228, 1963, 2194, 2310, 3016, 3721
StyI	CCWWGG	2 cut(s)	1634, 2332
TaaI	ACNGT	9 cut(s)	398, 936, 1735, 1912, 1972, 2376, 2481, 2677, 3606
TaiI	ACGT	1 cut(s)	2735
TaqI	TCGA	4 cut(s)	62, 305, 752, 1974
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	2 cut(s)	207, 3016
TscAI	CASTG	8 cut(s)	75, 88, 403, 724, 1821, 1993, 2490, 2919
TspDTI	ATGAA	9 cut(s)	530, 1037, 1167, 1317, 2318, 2385, 2937, 3408, 3486
TspGWI	ACGGA	2 cut(s)	2294, 2633
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	8 cut(s)	75, 88, 403, 724, 1821, 1993, 2490, 2919
Van91I	CCANNNNNTGG	1 cut(s)	1912
Vha464I	CTTAAG	2 cut(s)	1316, 2099
VneI	GTGCAC	1 cut(s)	3619
VpaK11BI	GGWCC	8 cut(s)	213, 1553, 1781, 1883, 2665, 2711, 3003, 3356
VspI	ATTAAT	4 cut(s)	942, 1947, 2021, 2430
XapI	RAATTY	6 cut(s)	51, 1354, 2925, 3028, 3292, 3661
XbaI	TCTAGA	2 cut(s)	2866, 3155
XmaI	CCCGGG	1 cut(s)	193
XmaJI	CCTAGG	1 cut(s)	1634
XmiI	GTMKAC	2 cut(s)	686, 3314
XmnI	GAANNNNTTC	1 cut(s)	2625
Zsp2I	ATGCAT	2 cut(s)	1296, 3066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.