RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33540 AT2G33540 |
| fragaria_vesca | FvH4_4g22870 FvH4_4g22870 FvH4_4g22870 |
| malus_domestica | MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1 |
| prunus_persica | Prupe.1G217600_v2.0.a1 |
| pyrus_communis | pycom13g11190 pycom13g11200 pycom16g10920 |
| rosa_chinensis | RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121 |
| rosa_laevigata | RLG00000007096 |
| rosa_multiflora | Rmu_sc0000846.1_g000014 |
| rosa_roxburghii | Rroxscaffold_5G00370740 |
| rosa_rugosa | Rorug04G0233100 |
| rosa_samantha | Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000 |
| rosa_wichuraiana | Rw4G025040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1666, 1876 |
| Acc36I | ACCTGC | 5 cut(s) | 500, 779, 1666, 1876, 2363 |
| Acc65I | GGTACC | 1 cut(s) | 1565 |
| AccB1I | GGYRCC | 2 cut(s) | 1565, 1678 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1510, 1576 |
| AccI | GTMKAC | 2 cut(s) | 284, 2978 |
| AciI | CCGC | 7 cut(s) | 435, 1295, 1818, 1963, 2553, 2677, 3086 |
| AcoI | YGGCCR | 2 cut(s) | 2391, 2939 |
| AcsI | RAATTY | 4 cut(s) | 2589, 2692, 2956, 3325 |
| AcuI | CTGAAG | 4 cut(s) | 555, 603, 975, 1197 |
| AcvI | CACGTG | 1 cut(s) | 2397 |
| AfaI | GTAC | 7 cut(s) | 264, 324, 514, 1567, 1633, 2055, 2262 |
| AflII | CTTAAG | 2 cut(s) | 914, 1763 |
| AjnI | CCWGG | 5 cut(s) | 1503, 1561, 1627, 2680, 3385 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1909, 1941 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1057, 1089 |
| Alw21I | GWGCWC | 3 cut(s) | 1847, 1867, 3287 |
| Alw26I | GTCTC | 6 cut(s) | 186, 230, 845, 1221, 2298, 3046 |
| Alw44I | GTGCAC | 1 cut(s) | 3283 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 86, 1178, 2153, 2165 |
| Ama87I | CYCGRG | 1 cut(s) | 858 |
| AoxI | GGCC | 6 cut(s) | 198, 864, 2391, 2678, 2939, 3159 |
| ApaLI | GTGCAC | 1 cut(s) | 3283 |
| ApoI | RAATTY | 4 cut(s) | 2589, 2692, 2956, 3325 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 931, 963 |
| AseI | ATTAAT | 4 cut(s) | 540, 1611, 1685, 2094 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2289 |
| Asp718I | GGTACC | 1 cut(s) | 1565 |
| AspA2I | CCTAGG | 1 cut(s) | 1232 |
| AspS9I | GGNCC | 8 cut(s) | 865, 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| AsuC2I | CCSGG | 2 cut(s) | 1860, 1976 |
| AsuHPI | GGTGA | 9 cut(s) | 472, 1013, 1888, 2176, 2837, 2861, 3230, 3236, 3358 |
| AsuNHI | GCTAGC | 2 cut(s) | 1133, 2174 |
| AvaI | CYCGRG | 1 cut(s) | 858 |
| AvaII | GGWCC | 7 cut(s) | 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| AvrII | CCTAGG | 1 cut(s) | 1232 |
| AxyI | CCTNAGG | 1 cut(s) | 1359 |
| BaeGI | GKGCMC | 4 cut(s) | 1657, 1818, 3287, 3358 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 558, 591 |
| BalI | TGGCCA | 1 cut(s) | 2941 |
| BamHI | GGATCC | 2 cut(s) | 1978, 2836 |
| BanI | GGYRCC | 2 cut(s) | 1565, 1678 |
| BanII | GRGCYC | 3 cut(s) | 359, 1847, 2797 |
| BauI | CACGAG | 1 cut(s) | 774 |
| BbrPI | CACGTG | 1 cut(s) | 2397 |
| Bbv12I | GWGCWC | 3 cut(s) | 1847, 1867, 3287 |
| BbvCI | CCTCAGC | 1 cut(s) | 2325 |
| BceAI | ACGGC | 2 cut(s) | 305, 3017 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2348, 2382 |
| BciT130I | CCWGG | 5 cut(s) | 1505, 1563, 1629, 2682, 3387 |
| BciVI | GTATCC | 1 cut(s) | 390 |
| BclI | TGATCA | 3 cut(s) | 2314, 3040, 3301 |
| BcnI | CCSGG | 2 cut(s) | 1860, 1976 |
| BcoDI | GTCTC | 6 cut(s) | 186, 230, 845, 1221, 2298, 3046 |
| BfmI | CTRYAG | 3 cut(s) | 2154, 2367, 2760 |
| BfrI | CTTAAG | 2 cut(s) | 914, 1763 |
| BfuAI | ACCTGC | 5 cut(s) | 500, 779, 1666, 1876, 2363 |
| BfuI | GTATCC | 1 cut(s) | 390 |
| BglII | AGATCT | 1 cut(s) | 3108 |
| BlnI | CCTAGG | 1 cut(s) | 1232 |
| BlpI | GCTNAGC | 3 cut(s) | 438, 1699, 1797 |
| BmcAI | AGTACT | 1 cut(s) | 264 |
| Bme1390I | CCNGG | 7 cut(s) | 1505, 1563, 1629, 1860, 1976, 2682, 3387 |
| Bme18I | GGWCC | 7 cut(s) | 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| BmeT110I | CYCGRG | 1 cut(s) | 858 |
| BmgT120I | GGNCC | 8 cut(s) | 865, 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| BmiI | GGNNCC | 7 cut(s) | 1502, 1567, 1680, 1980, 2286, 2838, 2862 |
| BmrFI | CCNGG | 7 cut(s) | 1505, 1563, 1629, 1860, 1976, 2682, 3387 |
| BmsI | GCATC | 6 cut(s) | 2240, 2422, 2715, 2737, 3083, 3391 |
| BmtI | GCTAGC | 2 cut(s) | 1137, 2178 |
| BpmI | CTGGAG | 1 cut(s) | 1920 |
| Bpu10I | CCTNAGC | 2 cut(s) | 164, 2325 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 438, 1699, 1797 |
| BpuEI | CTTGAG | 2 cut(s) | 1324, 1831 |
| BpuMI | CCSGG | 2 cut(s) | 1860, 1976 |
| BsaAI | YACGTR | 1 cut(s) | 2397 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2532, 2835 |
| BsaI | GGTCTC | 1 cut(s) | 1221 |
| BsaJI | CCNNGG | 3 cut(s) | 1232, 1996, 2681 |
| BsaWI | WCCGGW | 3 cut(s) | 228, 363, 2643 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1822, 1852 |
| Bse118I | RCCGGY | 1 cut(s) | 2389 |
| Bse1I | ACTGG | 4 cut(s) | 585, 1650, 2576, 3218 |
| Bse21I | CCTNAGG | 1 cut(s) | 1359 |
| Bse3DI | GCAATG | 1 cut(s) | 2169 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2532, 2835 |
| BseBI | CCWGG | 5 cut(s) | 1505, 1563, 1629, 2682, 3387 |
| BseDI | CCNNGG | 3 cut(s) | 1232, 1996, 2681 |
| BseJI | GATNNNNATC | 2 cut(s) | 2532, 2835 |
| BseMI | GCAATG | 1 cut(s) | 2169 |
| BseNI | ACTGG | 4 cut(s) | 585, 1650, 2576, 3218 |
| BseRI | GAGGAG | 6 cut(s) | 47, 273, 1098, 1101, 1104, 1376 |
| BseSI | GKGCMC | 4 cut(s) | 1657, 1818, 3287, 3358 |
| BseYI | CCCAGC | 1 cut(s) | 3390 |
| BsgI | GTGCAG | 3 cut(s) | 1032, 1191, 2337 |
| BshFI | GGCC | 6 cut(s) | 200, 866, 2393, 2680, 2941, 3161 |
| BshNI | GGYRCC | 2 cut(s) | 1565, 1678 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1847, 1867, 3287 |
| BsiHKCI | CYCGRG | 1 cut(s) | 858 |
| BsiSI | CCGG | 6 cut(s) | 229, 364, 1860, 1975, 2390, 2644 |
| BslFI | GGGAC | 4 cut(s) | 700, 1059, 2043, 3349 |
| BsmAI | GTCTC | 6 cut(s) | 186, 230, 845, 1221, 2298, 3046 |
| BsmFI | GGGAC | 4 cut(s) | 700, 1059, 2043, 3349 |
| BsnI | GGCC | 6 cut(s) | 200, 866, 2393, 2680, 2941, 3161 |
| Bso31I | GGTCTC | 1 cut(s) | 1221 |
| BsoBI | CYCGRG | 1 cut(s) | 858 |
| Bsp1286I | GDGCHC | 8 cut(s) | 359, 1657, 1818, 1847, 1867, 2797, 3287, 3358 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 438, 1699, 1797 |
| BspACI | CCGC | 7 cut(s) | 435, 1295, 1818, 1963, 2553, 2677, 3086 |
| BspANI | GGCC | 6 cut(s) | 200, 866, 2393, 2680, 2941, 3161 |
| BspHI | TCATGA | 2 cut(s) | 745, 3043 |
| BspLI | GGNNCC | 7 cut(s) | 1502, 1567, 1680, 1980, 2286, 2838, 2862 |
| BspMAI | CTGCAG | 1 cut(s) | 2371 |
| BspMI | ACCTGC | 5 cut(s) | 500, 779, 1666, 1876, 2363 |
| BspOI | GCTAGC | 2 cut(s) | 1137, 2178 |
| BspT107I | GGYRCC | 2 cut(s) | 1565, 1678 |
| BspTI | CTTAAG | 2 cut(s) | 914, 1763 |
| BspTNI | GGTCTC | 1 cut(s) | 1221 |
| BsrDI | GCAATG | 1 cut(s) | 2169 |
| BsrFI | RCCGGY | 1 cut(s) | 2389 |
| BsrI | ACTGG | 4 cut(s) | 585, 1650, 2576, 3218 |
| BssAI | RCCGGY | 1 cut(s) | 2389 |
| BssECI | CCNNGG | 3 cut(s) | 1232, 1996, 2681 |
| BssNAI | GTATAC | 1 cut(s) | 2979 |
| BssSI | CACGAG | 1 cut(s) | 774 |
| BssT1I | CCWWGG | 1 cut(s) | 1232 |
| Bst1107I | GTATAC | 1 cut(s) | 2979 |
| Bst2BI | CACGAG | 1 cut(s) | 774 |
| Bst2UI | CCWGG | 5 cut(s) | 1505, 1563, 1629, 2682, 3387 |
| Bst4CI | ACNGT | 9 cut(s) | 534, 1333, 1576, 1636, 2000, 2040, 2145, 2341, 3270 |
| Bst6I | CTCTTC | 2 cut(s) | 990, 2645 |
| BstAFI | CTTAAG | 2 cut(s) | 914, 1763 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 86, 1169, 2514 |
| BstBAI | YACGTR | 1 cut(s) | 2397 |
| BstC8I | GCNNGC | 9 cut(s) | 254, 1135, 1696, 1713, 1818, 2176, 2391, 2506, 2510 |
| BstDSI | CCRYGG | 1 cut(s) | 1996 |
| BstEII | GGTNACC | 1 cut(s) | 3307 |
| BstMAI | GTCTC | 6 cut(s) | 186, 230, 845, 1221, 2298, 3046 |
| BstNI | CCWGG | 5 cut(s) | 1505, 1563, 1629, 2682, 3387 |
| BstPI | GGTNACC | 1 cut(s) | 3307 |
| BstSCI | CCNGG | 7 cut(s) | 1503, 1561, 1627, 1858, 1974, 2680, 3385 |
| BstSFI | CTRYAG | 3 cut(s) | 2154, 2367, 2760 |
| BstSLI | GKGCMC | 4 cut(s) | 1657, 1818, 3287, 3358 |
| BstX2I | RGATCY | 7 cut(s) | 1978, 2527, 2572, 2782, 2836, 2875, 3108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1129 |
| BstYI | RGATCY | 7 cut(s) | 1978, 2527, 2572, 2782, 2836, 2875, 3108 |
| BstZ17I | GTATAC | 1 cut(s) | 2979 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1359 |
| BsuI | GTATCC | 1 cut(s) | 390 |
| BsuRI | GGCC | 6 cut(s) | 200, 866, 2393, 2680, 2941, 3161 |
| BtgI | CCRYGG | 1 cut(s) | 1996 |
| BtsI | GCAGTG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 5 cut(s) | 315, 1419, 1657, 2154, 2583 |
| BveI | ACCTGC | 5 cut(s) | 500, 779, 1666, 1876, 2363 |
| Cac8I | GCNNGC | 9 cut(s) | 254, 1135, 1696, 1713, 1818, 2176, 2391, 2506, 2510 |
| CaiI | CAGNNNCTG | 4 cut(s) | 86, 1178, 2153, 2165 |
| CciI | TCATGA | 2 cut(s) | 745, 3043 |
| Cfr10I | RCCGGY | 1 cut(s) | 2389 |
| Cfr13I | GGNCC | 8 cut(s) | 865, 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| CseI | GACGC | 1 cut(s) | 3390 |
| Csp6I | GTAC | 7 cut(s) | 263, 323, 513, 1566, 1632, 2054, 2261 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 843, 878, 1395, 1430 |
| CviQI | GTAC | 7 cut(s) | 263, 323, 513, 1566, 1632, 2054, 2261 |
| EaeI | YGGCCR | 2 cut(s) | 2391, 2939 |
| Eam1104I | CTCTTC | 2 cut(s) | 990, 2645 |
| EarI | CTCTTC | 2 cut(s) | 990, 2645 |
| Ecl136II | GAGCTC | 1 cut(s) | 1845 |
| Eco130I | CCWWGG | 1 cut(s) | 1232 |
| Eco24I | GRGCYC | 3 cut(s) | 359, 1847, 2797 |
| Eco31I | GGTCTC | 1 cut(s) | 1221 |
| Eco32I | GATATC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 7 cut(s) | 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| Eco53kI | GAGCTC | 1 cut(s) | 1845 |
| Eco57I | CTGAAG | 4 cut(s) | 555, 603, 975, 1197 |
| Eco72I | CACGTG | 1 cut(s) | 2397 |
| Eco81I | CCTNAGG | 1 cut(s) | 1359 |
| Eco88I | CYCGRG | 1 cut(s) | 858 |
| Eco91I | GGTNACC | 1 cut(s) | 3307 |
| EcoICRI | GAGCTC | 1 cut(s) | 1845 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3020 |
| EcoO65I | GGTNACC | 1 cut(s) | 3307 |
| EcoRI | GAATTC | 1 cut(s) | 3325 |
| EcoRII | CCWGG | 5 cut(s) | 1503, 1561, 1627, 2680, 3385 |
| EcoRV | GATATC | 1 cut(s) | 468 |
| EcoT14I | CCWWGG | 1 cut(s) | 1232 |
| EcoT22I | ATGCAT | 2 cut(s) | 894, 2730 |
| EcoT38I | GRGCYC | 3 cut(s) | 359, 1847, 2797 |
| ErhI | CCWWGG | 1 cut(s) | 1232 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 282, 314, 744, 776, 1687, 1719 |
| FaqI | GGGAC | 4 cut(s) | 700, 1059, 2043, 3349 |
| FauI | CCCGC | 1 cut(s) | 1825 |
| FauNDI | CATATG | 1 cut(s) | 2655 |
| FbaI | TGATCA | 3 cut(s) | 2314, 3040, 3301 |
| FblI | GTMKAC | 2 cut(s) | 284, 2978 |
| FriOI | GRGCYC | 3 cut(s) | 359, 1847, 2797 |
| GsaI | CCCAGC | 1 cut(s) | 3394 |
| GsuI | CTGGAG | 1 cut(s) | 1920 |
| HaeIII | GGCC | 6 cut(s) | 200, 866, 2393, 2680, 2941, 3161 |
| HapII | CCGG | 6 cut(s) | 229, 364, 1860, 1975, 2390, 2644 |
| HgaI | GACGC | 1 cut(s) | 3390 |
| HincII | GTYRAC | 2 cut(s) | 550, 1269 |
| HindII | GTYRAC | 2 cut(s) | 550, 1269 |
| HindIII | AAGCTT | 2 cut(s) | 250, 2023 |
| HpaI | GTTAAC | 1 cut(s) | 550 |
| HpaII | CCGG | 6 cut(s) | 229, 364, 1860, 1975, 2390, 2644 |
| HphI | GGTGA | 9 cut(s) | 472, 1013, 1888, 2176, 2837, 2861, 3230, 3236, 3358 |
| HpyCH4III | ACNGT | 9 cut(s) | 534, 1333, 1576, 1636, 2000, 2040, 2145, 2341, 3270 |
| HpyCH4IV | ACGT | 1 cut(s) | 2396 |
| HpySE526I | ACGT | 1 cut(s) | 2396 |
| KpnI | GGTACC | 1 cut(s) | 1569 |
| KroI | GCCGGC | 1 cut(s) | 2389 |
| KroNI | GCCGGC | 1 cut(s) | 2391 |
| Ksp22I | TGATCA | 3 cut(s) | 2314, 3040, 3301 |
| KspAI | GTTAAC | 1 cut(s) | 550 |
| LmnI | GCTCC | 4 cut(s) | 370, 1862, 1901, 1942 |
| LweI | GCATC | 6 cut(s) | 2240, 2422, 2715, 2737, 3083, 3391 |
| MaeII | ACGT | 1 cut(s) | 2396 |
| MaeIII | GTNAC | 2 cut(s) | 2744, 3307 |
| MfeI | CAATTG | 1 cut(s) | 1290 |
| MflI | RGATCY | 7 cut(s) | 1978, 2527, 2572, 2782, 2836, 2875, 3108 |
| MhlI | GDGCHC | 8 cut(s) | 359, 1657, 1818, 1847, 1867, 2797, 3287, 3358 |
| MlsI | TGGCCA | 1 cut(s) | 2941 |
| MluNI | TGGCCA | 1 cut(s) | 2941 |
| MlyI | GAGTC | 4 cut(s) | 68, 188, 705, 1373 |
| MmeI | TCCRAC | 7 cut(s) | 9, 828, 1440, 1459, 1766, 1964, 2810 |
| Mox20I | TGGCCA | 1 cut(s) | 2941 |
| Mph1103I | ATGCAT | 2 cut(s) | 894, 2730 |
| MroNI | GCCGGC | 1 cut(s) | 2389 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2289 |
| MscI | TGGCCA | 1 cut(s) | 2941 |
| MslI | CAYNNNNRTG | 5 cut(s) | 278, 897, 1127, 2001, 3060 |
| Msp20I | TGGCCA | 1 cut(s) | 2941 |
| MspA1I | CMGCKG | 4 cut(s) | 83, 437, 2906, 3263 |
| MspCI | CTTAAG | 2 cut(s) | 914, 1763 |
| MspI | CCGG | 6 cut(s) | 229, 364, 1860, 1975, 2390, 2644 |
| MspR9I | CCNGG | 7 cut(s) | 1505, 1563, 1629, 1860, 1976, 2682, 3387 |
| MunI | CAATTG | 1 cut(s) | 1290 |
| MvaI | CCWGG | 5 cut(s) | 1505, 1563, 1629, 2682, 3387 |
| NaeI | GCCGGC | 1 cut(s) | 2391 |
| NciI | CCSGG | 2 cut(s) | 1860, 1976 |
| NdeI | CATATG | 1 cut(s) | 2655 |
| NgoMIV | GCCGGC | 1 cut(s) | 2389 |
| NheI | GCTAGC | 2 cut(s) | 1133, 2174 |
| NlaIV | GGNNCC | 7 cut(s) | 1502, 1567, 1680, 1980, 2286, 2838, 2862 |
| NmeAIII | GCCGAG | 1 cut(s) | 226 |
| NsiI | ATGCAT | 2 cut(s) | 894, 2730 |
| PacI | TTAATTAA | 1 cut(s) | 1494 |
| PagI | TCATGA | 2 cut(s) | 745, 3043 |
| PaqCI | CACCTGC | 2 cut(s) | 1666, 1876 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2393 |
| PdiI | GCCGGC | 1 cut(s) | 2391 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2289 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1510, 1576 |
| PfoI | TCCNGGA | 1 cut(s) | 1974 |
| PleI | GAGTC | 4 cut(s) | 67, 187, 705, 1372 |
| PmaCI | CACGTG | 1 cut(s) | 2397 |
| PmlI | CACGTG | 1 cut(s) | 2397 |
| PpsI | GAGTC | 4 cut(s) | 67, 187, 705, 1372 |
| Ppu21I | YACGTR | 1 cut(s) | 2397 |
| PpuMI | RGGWCCY | 1 cut(s) | 3020 |
| PshBI | ATTAAT | 4 cut(s) | 540, 1611, 1685, 2094 |
| Psp124BI | GAGCTC | 1 cut(s) | 1847 |
| Psp5II | RGGWCCY | 1 cut(s) | 3020 |
| Psp6I | CCWGG | 5 cut(s) | 1503, 1561, 1627, 2680, 3385 |
| PspCI | CACGTG | 1 cut(s) | 2397 |
| PspEI | GGTNACC | 1 cut(s) | 3307 |
| PspFI | CCCAGC | 1 cut(s) | 3390 |
| PspGI | CCWGG | 5 cut(s) | 1503, 1561, 1627, 2680, 3385 |
| PspN4I | GGNNCC | 7 cut(s) | 1502, 1567, 1680, 1980, 2286, 2838, 2862 |
| PspPI | GGNCC | 8 cut(s) | 865, 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| PspPPI | RGGWCCY | 1 cut(s) | 3020 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 627, 659 |
| PstI | CTGCAG | 1 cut(s) | 2371 |
| PstNI | CAGNNNCTG | 4 cut(s) | 86, 1178, 2153, 2165 |
| PsuI | RGATCY | 7 cut(s) | 1978, 2527, 2572, 2782, 2836, 2875, 3108 |
| PvuII | CAGCTG | 3 cut(s) | 83, 2906, 3263 |
| RsaI | GTAC | 7 cut(s) | 264, 324, 514, 1567, 1633, 2055, 2262 |
| RsaNI | GTAC | 7 cut(s) | 263, 323, 513, 1566, 1632, 2054, 2261 |
| RseI | CAYNNNNRTG | 5 cut(s) | 278, 897, 1127, 2001, 3060 |
| SacI | GAGCTC | 1 cut(s) | 1847 |
| Sau96I | GGNCC | 8 cut(s) | 865, 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| ScaI | AGTACT | 1 cut(s) | 264 |
| SchI | GAGTC | 4 cut(s) | 68, 188, 705, 1373 |
| ScrFI | CCNGG | 7 cut(s) | 1505, 1563, 1629, 1860, 1976, 2682, 3387 |
| SduI | GDGCHC | 8 cut(s) | 359, 1657, 1818, 1847, 1867, 2797, 3287, 3358 |
| SfaNI | GCATC | 6 cut(s) | 2240, 2422, 2715, 2737, 3083, 3391 |
| SfcI | CTRYAG | 3 cut(s) | 2154, 2367, 2760 |
| SinI | GGWCC | 7 cut(s) | 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 278, 897, 1127, 2001, 3060 |
| SmlI | CTYRAG | 4 cut(s) | 914, 1339, 1763, 1846 |
| SmoI | CTYRAG | 4 cut(s) | 914, 1339, 1763, 1846 |
| SsiI | CCGC | 7 cut(s) | 435, 1295, 1818, 1963, 2553, 2677, 3086 |
| SspI | AATATT | 3 cut(s) | 2050, 2203, 3154 |
| SstI | GAGCTC | 1 cut(s) | 1847 |
| StyD4I | CCNGG | 7 cut(s) | 1503, 1561, 1627, 1858, 1974, 2680, 3385 |
| StyI | CCWWGG | 1 cut(s) | 1232 |
| TaaI | ACNGT | 9 cut(s) | 534, 1333, 1576, 1636, 2000, 2040, 2145, 2341, 3270 |
| TaiI | ACGT | 1 cut(s) | 2399 |
| TaqI | TCGA | 3 cut(s) | 350, 1240, 1638 |
| TatI | WGTACW | 1 cut(s) | 262 |
| TauI | GCSGC | 1 cut(s) | 2680 |
| TscAI | CASTG | 5 cut(s) | 322, 1419, 1657, 2154, 2583 |
| TspDTI | ATGAA | 9 cut(s) | 116, 635, 765, 915, 1982, 2049, 2601, 3072, 3150 |
| TspGWI | ACGGA | 2 cut(s) | 1958, 2297 |
| TspRI | CASTG | 5 cut(s) | 322, 1419, 1657, 2154, 2583 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1510, 1576 |
| Vha464I | CTTAAG | 2 cut(s) | 914, 1763 |
| VneI | GTGCAC | 1 cut(s) | 3283 |
| VpaK11BI | GGWCC | 7 cut(s) | 1151, 1379, 1481, 2329, 2375, 2667, 3020 |
| VspI | ATTAAT | 4 cut(s) | 540, 1611, 1685, 2094 |
| XapI | RAATTY | 4 cut(s) | 2589, 2692, 2956, 3325 |
| XbaI | TCTAGA | 3 cut(s) | 2530, 2819, 3031 |
| XmaJI | CCTAGG | 1 cut(s) | 1232 |
| XmiI | GTMKAC | 2 cut(s) | 284, 2978 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2289 |
| ZrmI | AGTACT | 1 cut(s) | 264 |
| Zsp2I | ATGCAT | 2 cut(s) | 894, 2730 |