Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Reverse (-)

53974840 .. 53975601

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTCGTTGGTGGATCCAATTGTCTTGGGTGGAAGAATTGCATAGAAATCGAAGAAACCCTAGGGGGTGTGATGGGCAAGGATGAGAGTAGCAAAGAGGTTGGGGATGTTGAAGAAGGTGAAATTTCCGATTCGACTTCAGTGGAGGAGATCAGTGAGGAGGATTTTGTTAAGCAGGAATTGAAGGTTGAGCCGAAATCCAATGGCGGAGGAGGAGATGCTGGTAGGGTTTGGACGATGCGGGACATCTACAACTACCCGGGGTTTCGCGGCTACGGGTCCGGTCTGGTTAACCTGGCTTGGGCTCAGGCCGTGCAGAATAAACCTCTCAATGAGCTCTTTGTGATGGATGTTGATTCCGAAGAGAAATCGAAGCAGCAGCAGCAGCGATCGTCGTCTTCGCTGCCGGTGAGTTCCGGCAATGCGAAGGGGAGGAGAGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

148

Amino Acids

16.17

Weight (kDa)

4.55

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	207, 241, 270
AclWI	GGATC	2 cut(s)	9, 22
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	113, 184
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	9, 22
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	5 cut(s)	376, 379, 382, 385, 403
ApoI	RAATTY	1 cut(s)	123
AspA2I	CCTAGG	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	2 cut(s)	260, 261
AsuHPI	GGTGA	2 cut(s)	131, 421
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	279
AvrII	CCTAGG	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	307, 339
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	388, 390, 391, 394, 397
BccI	CCATC	2 cut(s)	67, 340
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	2 cut(s)	260, 261
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	6 cut(s)	271, 377, 380, 383, 386, 404
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	6 cut(s)	272, 378, 381, 384, 387, 405
Bme1390I	CCNGG	3 cut(s)	260, 261, 296
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	16, 280
BmrFI	CCNGG	3 cut(s)	260, 261, 296
BmsI	GCATC	2 cut(s)	208, 228
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	260, 261
BsaJI	CCNNGG	3 cut(s)	61, 259, 260
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	61, 259, 260
BseGI	GGATG	3 cut(s)	88, 112, 355
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	4 cut(s)	161, 173, 225, 228
BseXI	GCAGC	5 cut(s)	388, 390, 391, 394, 397
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	4 cut(s)	260, 282, 407, 417
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	307, 339
Bsp143I	GATC	3 cut(s)	14, 150, 389
BspACI	CCGC	3 cut(s)	207, 241, 270
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	16, 280
BspPI	GGATC	2 cut(s)	9, 22
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	61, 259, 260
BssMI	GATC	3 cut(s)	14, 150, 389
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	88, 112, 355
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	17, 153, 392
BstMBI	GATC	3 cut(s)	14, 150, 389
BstMCI	CGRYCG	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 385
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	258, 259, 294
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	388, 390, 391, 394, 397
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	88, 112, 355
BtsIMutI	CAGTG	2 cut(s)	147, 160
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	279
Cfr9I	CCCGGG	1 cut(s)	259
CviJI	RGCY	6 cut(s)	193, 273, 299, 305, 311, 337
CviKI_1	RGCY	6 cut(s)	193, 273, 299, 305, 311, 337
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	16, 152, 391
DpnII	GATC	3 cut(s)	14, 150, 389
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	307, 339
Eco47I	GGWCC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	307, 339
ErhI	CCWWGG	1 cut(s)	61
FaiI	YATR	1 cut(s)	44
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	6 cut(s)	271, 377, 380, 383, 386, 404
FokI	GGATG	3 cut(s)	95, 119, 362
FriOI	GRGCYC	2 cut(s)	307, 339
Fsp4HI	GCNGC	6 cut(s)	271, 377, 380, 383, 386, 404
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	6 cut(s)	271, 377, 380, 383, 386, 404
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	4 cut(s)	260, 282, 407, 417
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	131, 356
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	4 cut(s)	260, 282, 407, 417
HphI	GGTGA	2 cut(s)	131, 421
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	130, 361
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	3 cut(s)	110, 178, 421
HpyCH4V	TGCA	2 cut(s)	42, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 385
HpyF3I	CTNAG	1 cut(s)	306
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	14, 150, 389
Lsp1109I	GCAGC	5 cut(s)	388, 390, 391, 394, 397
LweI	GCATC	2 cut(s)	208, 228
MaeI	CTAG	1 cut(s)	62
MalI	GATC	3 cut(s)	16, 152, 391
MboI	GATC	3 cut(s)	14, 150, 389
MboII	GAAGA	5 cut(s)	46, 65, 125, 374, 390
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	307, 339
MluCI	AATT	4 cut(s)	19, 37, 123, 179
MnlI	CCTC	8 cut(s)	91, 139, 151, 154, 203, 206, 336, 426
MseI	TTAA	2 cut(s)	171, 291
MspI	CCGG	4 cut(s)	260, 282, 407, 417
MspR9I	CCNGG	3 cut(s)	260, 261, 296
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	382, 385
NciI	CCSGG	2 cut(s)	260, 261
NdeII	GATC	3 cut(s)	14, 150, 389
NlaIV	GGNNCC	2 cut(s)	16, 280
PfeI	GAWTC	2 cut(s)	131, 356
PkrI	GCNGC	6 cut(s)	272, 378, 381, 384, 387, 405
Ple19I	CGATCG	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	16, 280
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	171, 291
SatI	GCNGC	6 cut(s)	271, 377, 380, 383, 386, 404
Sau3AI	GATC	3 cut(s)	14, 150, 389
Sau96I	GGNCC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	260, 261, 296
SduI	GDGCHC	2 cut(s)	307, 339
SetI	ASST	6 cut(s)	102, 121, 189, 297, 328, 339
SfaNI	GCATC	2 cut(s)	208, 228
SinI	GGWCC	1 cut(s)	279
SmaI	CCCGGG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	19, 37, 123, 179
SsiI	CCGC	3 cut(s)	207, 241, 270
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	258, 259, 294
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	3 cut(s)	51, 134, 371
TasI	AATT	4 cut(s)	19, 37, 123, 179
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	131, 356
Tru1I	TTAA	2 cut(s)	171, 291
Tru9I	TTAA	2 cut(s)	171, 291
TscAI	CASTG	2 cut(s)	147, 160
TseI	GCWGC	5 cut(s)	376, 379, 382, 385, 403
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	2 cut(s)	147, 160
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	123
XmaI	CCCGGG	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.