Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

27069609 .. 27072563

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25240.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAAAGTTGTTGAAAGTTTTCCCAGTAAGAGAGCCATTTCAGCTATCAAACGGAGCTTTCATTCCGGCCAAGTTTCGAAACAGTGTGTTTCCAATGTGAAACTGAGTAAAGATGAGTTTGTGTCAAAATTGCTTGATAGAAGATGGACATTGCCTAGCCCTGATGCTAGGATTCACCAAATAATGCTTTCAACCAGCAAAGTACAACCACAACCAGGAAGACCCTTGTCTGATATTTCCTTCTGGAACAATACTAACCCATGTTTTAGTGACGCTATGGCGGAAAAGGACGATTCTTTCTTTATTGTGAGGGATGATTTGTTGCATCCGTTGATCAATGGAAACAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTCGAAGATCATTCCGTGACTGATGTGGTGACTTGTGGAGGTTGCCAGAGTGCCCATACAGCAGCTGTTGCCGTTTCATGTTCAGAAAGAGGACTGAAACCACATTTACTCCTACGAGGGGAGCAGCCTGAAGTACTGACTGGCTATAACTTGATGTCAACCATATATGGCAATGTCACTTATGTACCAAGATCGCTTTATGCCAATAGGGAAAAGATGTTAAAGAGCCATGCTGATACTCTGGCAGGCAGTAGCGGTACCGTCCTTTGGTTTGATGATATTTTGGAGGCTTCTTTGAATCAAAATGATGGTGCTCTGAATCTTTCGCAAGAAATTGCTCAAAGAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGTGCAGGAGATGTTGTAGCATTACTAGGTTTGACTCGCCTAGTGCAGTACTTATCGCAGAATCACTTGCTTGGGAATGGAAGGGTCTTGAAGCTTGTTGTAGATTCTGGAACTGGGACAACAGCTGTTGGTTTAGCTCTTGGAGCCATATGTTTGGGGCTCCCATGGGAGGTAACTGCAGTGATGTTGGCTGATACGTATGATGGGTACAGACATCAGGAGAAGCGTTTGATTTCCAATTTCAAGAGGCATTTTCATACTCATATTGATCACTGCTTCAATGATATAGATAAAGGAATCGTGCACTGGGTAGAACGTTGTCACCCAAGAAAATTTGGCAATGTATTAGAAGGGGAATTAGAGGCATGCCAACATATTGCACAACAAACTGGTATTTTAGTCGACCCAGTTTATACACTTTCTGCTTGGGAGAAGGCAATGGCCCTTCATAAAAAGGAAGCAGAAGTTGAAGGAGGTGCAAAAGTGGTGATGCTTCACACTGGAGGCACTCTAGGCATGTTTGGGTTAGCACAGAGGTACAAATCTTACTTCTCCAAACTCAAAGTTGGACCATCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

447

Amino Acids

49.17

Weight (kDa)

8.28

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	1161
AciI	CCGC	2 cut(s)	281, 633
AclI	AACGTT	1 cut(s)	1075
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	1091
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	7 cut(s)	204, 513, 564, 637, 809, 968, 1298
AfiI	CCNNNNNNNGG	4 cut(s)	215, 496, 645, 928
AgsI	TTSAA	7 cut(s)	14, 192, 676, 850, 1003, 1039, 1229
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	6 cut(s)	44, 57, 443, 853, 884, 896
AluI	AGCT	6 cut(s)	44, 57, 443, 853, 884, 896
Alw21I	GWGCWC	2 cut(s)	694, 1065
Alw44I	GTGCAC	1 cut(s)	1061
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	67, 1200
ApaLI	GTGCAC	1 cut(s)	1061
ApeKI	GCWGC	2 cut(s)	440, 502
ApoI	RAATTY	1 cut(s)	1091
Asp700I	GAANNNNTTC	1 cut(s)	18
Asp718I	GGTACC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	1201, 1328
AsuHPI	GGTGA	4 cut(s)	167, 418, 1073, 1258
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	1328
BaeGI	GKGCMC	2 cut(s)	433, 1065
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	921
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	694, 1065
BbvI	GCAGC	2 cut(s)	452, 514
BccI	CCATC	5 cut(s)	138, 680, 738, 956, 1339
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	2 cut(s)	333, 1027
BfaI	CTAG	5 cut(s)	156, 168, 785, 800, 1271
BfmI	CTRYAG	1 cut(s)	936
BisI	GCNGC	2 cut(s)	441, 503
BlsI	GCNGC	2 cut(s)	442, 504
BmcAI	AGTACT	2 cut(s)	513, 809
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	1328
BmgT120I	GGNCC	2 cut(s)	1201, 1328
BmiI	GGNNCC	3 cut(s)	637, 904, 920
BmrFI	CCNGG	1 cut(s)	216
BmrI	ACTGGG	4 cut(s)	18, 882, 1075, 1160
BmsI	GCATC	4 cut(s)	154, 334, 352, 1239
BmuI	ACTGGG	4 cut(s)	18, 882, 1075, 1160
BoxI	GACNNNNGTC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	1281
Bpu14I	TTCGAA	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	957
BsaJI	CCNNGG	2 cut(s)	734, 923
BsaXI	ACNNNNNCTCC	4 cut(s)	471, 501, 759, 789
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 496, 645, 928
Bse1I	ACTGG	8 cut(s)	24, 523, 877, 1070, 1153, 1166, 1264, 1335
Bse3DI	GCAATG	4 cut(s)	149, 556, 1105, 1203
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	734, 923
BseGI	GGATG	5 cut(s)	319, 325, 367, 730, 1331
BseLI	CCNNNNNNNGG	4 cut(s)	215, 496, 645, 928
BseMI	GCAATG	4 cut(s)	149, 556, 1105, 1203
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	8 cut(s)	24, 523, 877, 1070, 1153, 1166, 1264, 1335
BseSI	GKGCMC	2 cut(s)	433, 1065
BseXI	GCAGC	2 cut(s)	452, 514
BsgI	GTGCAG	2 cut(s)	783, 824
BshFI	GGCC	2 cut(s)	69, 1202
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	694, 1065
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	4 cut(s)	215, 496, 645, 928
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	2 cut(s)	69, 1202
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	4 cut(s)	433, 694, 921, 1065
Bsp143I	GATC	4 cut(s)	333, 385, 569, 1027
Bsp19I	CCATGG	1 cut(s)	923
BspACI	CCGC	2 cut(s)	281, 633
BspANI	GGCC	2 cut(s)	69, 1202
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	637, 904, 920
BspMAI	CTGCAG	1 cut(s)	940
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	4 cut(s)	149, 556, 1105, 1203
BsrI	ACTGG	8 cut(s)	24, 523, 877, 1070, 1153, 1166, 1264, 1335
BssECI	CCNNGG	2 cut(s)	734, 923
BssMI	GATC	4 cut(s)	333, 385, 569, 1027
BssT1I	CCWWGG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	84, 640
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	957
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	625, 1126
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	923
BstF5I	GGATG	5 cut(s)	319, 325, 367, 730, 1331
BstKTI	GATC	4 cut(s)	336, 388, 572, 1030
BstMBI	GATC	4 cut(s)	333, 385, 569, 1027
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 437, 446, 902, 1272
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	2 cut(s)	1128, 1279
BstPAI	GACNNNNGTC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	2 cut(s)	433, 1065
BstSNI	TACGTA	1 cut(s)	957
BstV1I	GCAGC	2 cut(s)	452, 514
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	69, 1202
BtgI	CCRYGG	1 cut(s)	923
BtsCI	GGATG	5 cut(s)	319, 325, 367, 730, 1331
BtsI	GCAGTG	2 cut(s)	945, 1030
BtsIMutI	CAGTG	5 cut(s)	89, 945, 1030, 1063, 1257
Cac8I	GCNNGC	2 cut(s)	625, 1126
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	1201, 1328
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	7 cut(s)	203, 512, 563, 636, 808, 967, 1297
CviAII	CATG	6 cut(s)	261, 456, 608, 924, 1125, 1276
CviQI	GTAC	7 cut(s)	203, 512, 563, 636, 808, 967, 1297
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	4 cut(s)	335, 387, 571, 1029
DpnII	GATC	4 cut(s)	333, 385, 569, 1027
EaeI	YGGCCR	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	296
Eco105I	TACGTA	1 cut(s)	957
Eco130I	CCWWGG	1 cut(s)	923
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	1328
Eco57I	CTGAAG	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	923
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	923
FaeI	CATG	6 cut(s)	264, 459, 611, 927, 1128, 1279
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	6 cut(s)	260, 455, 607, 923, 1124, 1275
FauNDI	CATATG	1 cut(s)	908
FbaI	TGATCA	2 cut(s)	333, 1027
FblI	GTMKAC	1 cut(s)	1161
Fnu4HI	GCNGC	2 cut(s)	441, 503
FokI	GGATG	5 cut(s)	312, 326, 374, 717, 1318
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	441, 503
FspBI	CTAG	5 cut(s)	156, 168, 785, 800, 1271
GluI	GCNGC	2 cut(s)	441, 503
GsuI	CTGGAG	1 cut(s)	1281
HaeIII	GGCC	2 cut(s)	69, 1202
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	264, 459, 611, 927, 1128, 1279
HincII	GTYRAC	2 cut(s)	537, 1162
HindII	GTYRAC	2 cut(s)	537, 1162
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	9 cut(s)	172, 293, 370, 676, 697, 793, 820, 863, 1056
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	4 cut(s)	167, 418, 1073, 1258
Hpy166II	GTNNAC	3 cut(s)	537, 1063, 1162
Hpy188I	TCNGA	4 cut(s)	232, 463, 696, 738
Hpy188III	TCNNGA	5 cut(s)	244, 847, 867, 977, 1003
Hpy8I	GTNNAC	3 cut(s)	537, 1063, 1162
HpyAV	CCTTC	7 cut(s)	250, 752, 834, 1103, 1186, 1214, 1223
HpyCH4III	ACNGT	2 cut(s)	84, 640
HpyCH4IV	ACGT	2 cut(s)	956, 1075
HpyCH4V	TGCA	8 cut(s)	325, 365, 764, 805, 938, 1063, 1139, 1238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 437, 446, 902, 1272
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	2 cut(s)	956, 1075
Hsp92II	CATG	6 cut(s)	264, 459, 611, 927, 1128, 1279
KpnI	GGTACC	1 cut(s)	639
Ksp22I	TGATCA	2 cut(s)	333, 1027
Kzo9I	GATC	4 cut(s)	333, 385, 569, 1027
LmnI	GCTCC	4 cut(s)	54, 499, 902, 924
Lsp1109I	GCAGC	2 cut(s)	452, 514
LweI	GCATC	4 cut(s)	154, 334, 352, 1239
MaeI	CTAG	5 cut(s)	156, 168, 785, 800, 1271
MaeII	ACGT	2 cut(s)	956, 1075
MaeIII	GTNAC	7 cut(s)	269, 394, 406, 553, 725, 931, 1079
MalI	GATC	4 cut(s)	335, 387, 571, 1029
MboI	GATC	4 cut(s)	333, 385, 569, 1027
MboII	GAAGA	3 cut(s)	153, 231, 395
MhlI	GDGCHC	4 cut(s)	433, 694, 921, 1065
MluCI	AATT	8 cut(s)	128, 356, 711, 741, 747, 997, 1091, 1115
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	1 cut(s)	1306
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	599
MspA1I	CMGCKG	2 cut(s)	443, 884
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	41, 437, 446, 902, 1272
NcoI	CCATGG	1 cut(s)	923
NdeI	CATATG	1 cut(s)	908
NdeII	GATC	4 cut(s)	333, 385, 569, 1027
NlaIII	CATG	6 cut(s)	264, 459, 611, 927, 1128, 1279
NlaIV	GGNNCC	3 cut(s)	637, 904, 920
NmuCI	GTSAC	6 cut(s)	269, 394, 406, 553, 725, 1079
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	2 cut(s)	1128, 1279
NspV	TTCGAA	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	8 cut(s)	172, 293, 370, 676, 697, 820, 863, 1056
PkrI	GCNGC	2 cut(s)	442, 504
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
Ppu21I	YACGTR	1 cut(s)	957
PshAI	GACNNNNGTC	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	1075
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	637, 904, 920
PspPI	GGNCC	2 cut(s)	1201, 1328
PstI	CTGCAG	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	2 cut(s)	443, 884
RsaI	GTAC	7 cut(s)	204, 513, 564, 637, 809, 968, 1298
RsaNI	GTAC	7 cut(s)	203, 512, 563, 636, 808, 967, 1297
SalI	GTCGAC	1 cut(s)	1160
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	2 cut(s)	441, 503
Sau3AI	GATC	4 cut(s)	333, 385, 569, 1027
Sau96I	GGNCC	2 cut(s)	1201, 1328
ScaI	AGTACT	2 cut(s)	513, 809
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	4 cut(s)	433, 694, 921, 1065
SfaNI	GCATC	4 cut(s)	154, 334, 352, 1239
SfcI	CTRYAG	1 cut(s)	936
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	1 cut(s)	1328
SnaBI	TACGTA	1 cut(s)	957
SphI	GCATGC	1 cut(s)	1128
Sse9I	AATT	8 cut(s)	128, 356, 711, 741, 747, 997, 1091, 1115
SsiI	CCGC	2 cut(s)	281, 633
SspMI	CTAG	5 cut(s)	156, 168, 785, 800, 1271
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	923
TaaI	ACNGT	2 cut(s)	84, 640
TaiI	ACGT	2 cut(s)	959, 1078
TaqI	TCGA	3 cut(s)	77, 381, 1161
TasI	AATT	8 cut(s)	128, 356, 711, 741, 747, 997, 1091, 1115
TatI	WGTACW	3 cut(s)	202, 511, 807
TfiI	GAWTC	8 cut(s)	172, 293, 370, 676, 697, 820, 863, 1056
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	5 cut(s)	89, 945, 1037, 1070, 1264
TseFI	GTSAC	6 cut(s)	269, 394, 406, 553, 725, 1079
TseI	GCWGC	2 cut(s)	440, 502
Tsp45I	GTSAC	6 cut(s)	269, 394, 406, 553, 725, 1079
TspDTI	ATGAA	6 cut(s)	17, 50, 444, 771, 1004, 1196
TspGWI	ACGGA	3 cut(s)	67, 318, 382
TspRI	CASTG	5 cut(s)	89, 945, 1037, 1070, 1264
VneI	GTGCAC	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	1328
XapI	RAATTY	1 cut(s)	1091
XceI	RCATGY	2 cut(s)	1128, 1279
XmiI	GTMKAC	1 cut(s)	1161
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	5 cut(s)	156, 168, 785, 800, 1271
ZrmI	AGTACT	2 cut(s)	513, 809
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.