Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

29923430 .. 29925511

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGAAAAGGACGATTCTTTCTTGATTGTGAGGGATGATTTGTTGCATCCGTTGATAAATGGGAATAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTTGAAGATCATTCCGTGACTGATGTGGTGACATGTGGAGGTTGTCAAAGTGCCCATACAGCAGCTGCTGCCGTTTCATGTTCAGAAAGAGGATTAAAACCGCATTTACTTCTTGGAGGGGAGCAGCCTGAAATACTGACTGGCTATAACTTGATGTCAACATTATATGGCAATGTCACATATGTTCCAAGATCGATTTATGCAAATAGGGAAAAGATGTTAAAGAGCCATGCTGATTATTTGGCAGGCAGTAGTTGTAACGTCCTTCGGTTTAATGATATTTTGGAGGCTTCTTTGGATCAAAGTGATGGTGCTCTGAATCTTTTGCAAAAGGATGCTAATAGAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGCGCAGGAGATGTTGTAGCATTACTAGATGTAATTCTCTCCCTAGGTTTGATTCGCCTAGTGCAGTACTTATCCCAGAATCACTTACTTGGAAAAGAGAGGGTCTTGAAGTTTGTTGTAGATTCTGGAACTGGGACAACAGCTGTTGGTTTAGCTCTTGGAGCCATATGTTTGGGGCTCCCATGGGAGGTAACTGCAGTGATGTTGGCTGATTCATATGATGGGTACAGACATCAGGAGAAGCGCTTGATATCCAATTTTAAGAGGCATTTTGATACTCATATTGATCACTGCTTAGATGATATAGACAAAGGAATTGTGCACTGGGTAGAACGTTGCCACCCGAGAAAATTTGGCAATGTATTGGAAGGGGAATTAGAGGCGTGCCAACATATTGCACAACAAACTGGTATTTTAGTCGACCCAGTTTACACACTTTCTGCTTGGGAGAGGCCCTTCATAAAAAGGAAGCAGAAGTTGAACGAGGTGTACAAGTGGTCATGCTCCACACTGGAGGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

335

Amino Acids

37.13

Weight (kDa)

6.05

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	903
AciI	CCGC	1 cut(s)	203
AclI	AACGTT	1 cut(s)	817
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	833
AfaI	GTAC	3 cut(s)	551, 710, 974
AfeI	AGCGCT	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	107, 592, 964
AluBI	AGCT	3 cut(s)	167, 626, 638
AluI	AGCT	3 cut(s)	167, 626, 638
Alw21I	GWGCWC	2 cut(s)	418, 807
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	2 cut(s)	167, 170
Ama87I	CYCGRG	1 cut(s)	826
Aor51HI	AGCGCT	1 cut(s)	728
AoxI	GGCC	1 cut(s)	935
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	4 cut(s)	164, 167, 170, 226
ApoI	RAATTY	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	488, 729
AspS9I	GGNCC	1 cut(s)	936
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	826
AvrII	CCTAGG	1 cut(s)	526
BaeGI	GKGCMC	2 cut(s)	157, 807
BanII	GRGCYC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	418, 807
BbvI	GCAGC	4 cut(s)	154, 157, 176, 238
BccI	CCATC	3 cut(s)	404, 462, 698
BceAI	ACGGC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	769
BfaI	CTAG	4 cut(s)	509, 527, 542, 1006
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	730
BisI	GCNGC	4 cut(s)	165, 168, 171, 227
BlnI	CCTAGG	1 cut(s)	526
BlsI	GCNGC	4 cut(s)	166, 169, 172, 228
BmcAI	AGTACT	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	936
BmiI	GGNNCC	2 cut(s)	646, 662
BmrI	ACTGGG	3 cut(s)	624, 817, 902
BmsI	GCATC	3 cut(s)	58, 76, 427
BmuI	ACTGGG	3 cut(s)	624, 817, 902
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	458, 526, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	6 cut(s)	247, 619, 812, 895, 908, 999
Bse3DI	GCAATG	2 cut(s)	280, 847
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	458, 526, 665
BseGI	GGATG	5 cut(s)	43, 49, 91, 442, 454
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	2 cut(s)	280, 847
BseNI	ACTGG	6 cut(s)	247, 619, 812, 895, 908, 999
BseSI	GKGCMC	2 cut(s)	157, 807
BseXI	GCAGC	4 cut(s)	154, 157, 176, 238
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	937
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	418, 807
BsiHKCI	CYCGRG	1 cut(s)	826
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	937
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	4 cut(s)	157, 418, 663, 807
Bsp1407I	TGTACA	1 cut(s)	972
Bsp143I	GATC	4 cut(s)	109, 293, 400, 769
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	937
BspDI	ATCGAT	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	646, 662
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	280, 847
BsrGI	TGTACA	1 cut(s)	972
BsrI	ACTGG	6 cut(s)	247, 619, 812, 895, 908, 999
BssECI	CCNNGG	3 cut(s)	458, 526, 665
BssMI	GATC	4 cut(s)	109, 293, 400, 769
BssT1I	CCWWGG	2 cut(s)	526, 665
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	972
BstC8I	GCNNGC	2 cut(s)	349, 868
BstDEI	CTNAG	1 cut(s)	778
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	5 cut(s)	43, 49, 91, 442, 454
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	2 cut(s)	488, 729
BstKTI	GATC	4 cut(s)	112, 296, 403, 772
BstMBI	GATC	4 cut(s)	109, 293, 400, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 644
BstNSI	RCATGY	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	2 cut(s)	157, 807
BstV1I	GCAGC	4 cut(s)	154, 157, 176, 238
BstXI	CCANNNNNNTGG	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	937
BsuTUI	ATCGAT	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	5 cut(s)	43, 49, 91, 442, 454
BtsI	GCAGTG	2 cut(s)	687, 772
BtsIMutI	CAGTG	4 cut(s)	687, 772, 805, 992
Cac8I	GCNNGC	2 cut(s)	349, 868
CaiI	CAGNNNCTG	2 cut(s)	167, 170
CfoI	GCGC	2 cut(s)	488, 729
Cfr13I	GGNCC	1 cut(s)	936
ClaI	ATCGAT	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	550, 709, 973
CviAII	CATG	5 cut(s)	135, 180, 332, 666, 984
CviQI	GTAC	3 cut(s)	550, 709, 973
DdeI	CTNAG	1 cut(s)	778
DpnI	GATC	4 cut(s)	111, 295, 402, 771
DpnII	GATC	4 cut(s)	109, 293, 400, 769
Eco130I	CCWWGG	2 cut(s)	526, 665
Eco24I	GRGCYC	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	735
Eco47III	AGCGCT	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	826
EcoO109I	RGGNCCY	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	526, 665
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	2 cut(s)	526, 665
FaeI	CATG	5 cut(s)	138, 183, 335, 669, 987
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	5 cut(s)	134, 179, 331, 665, 983
FauNDI	CATATG	3 cut(s)	283, 650, 700
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	4 cut(s)	165, 168, 171, 227
FokI	GGATG	5 cut(s)	36, 50, 98, 441, 449
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	165, 168, 171, 227
FspBI	CTAG	4 cut(s)	509, 527, 542, 1006
GlaI	GCGC	2 cut(s)	487, 728
GluI	GCNGC	4 cut(s)	165, 168, 171, 227
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	1 cut(s)	937
HhaI	GCGC	2 cut(s)	488, 729
Hin1II	CATG	5 cut(s)	138, 183, 335, 669, 987
Hin6I	GCGC	2 cut(s)	486, 727
HinP1I	GCGC	2 cut(s)	486, 727
HincII	GTYRAC	2 cut(s)	261, 904
HindII	GTYRAC	2 cut(s)	261, 904
HinfI	GANTC	7 cut(s)	17, 94, 421, 535, 562, 605, 695
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	5 cut(s)	261, 805, 904, 913, 973
Hpy188I	TCNGA	3 cut(s)	187, 420, 462
Hpy188III	TCNNGA	4 cut(s)	25, 589, 609, 719
Hpy8I	GTNNAC	5 cut(s)	261, 805, 904, 913, 973
HpyAV	CCTTC	4 cut(s)	377, 476, 845, 949
HpyCH4IV	ACGT	2 cut(s)	363, 817
HpyCH4V	TGCA	8 cut(s)	49, 89, 305, 430, 547, 680, 805, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 644
HpyF3I	CTNAG	1 cut(s)	778
HpySE526I	ACGT	2 cut(s)	363, 817
Hsp92II	CATG	5 cut(s)	138, 183, 335, 669, 987
HspAI	GCGC	2 cut(s)	486, 727
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	4 cut(s)	109, 293, 400, 769
LmnI	GCTCC	4 cut(s)	223, 644, 666, 992
Lsp1109I	GCAGC	4 cut(s)	154, 157, 176, 238
LweI	GCATC	3 cut(s)	58, 76, 427
MaeI	CTAG	4 cut(s)	509, 527, 542, 1006
MaeII	ACGT	2 cut(s)	363, 817
MaeIII	GTNAC	6 cut(s)	118, 130, 277, 359, 449, 673
MalI	GATC	4 cut(s)	111, 295, 402, 771
MboI	GATC	4 cut(s)	109, 293, 400, 769
MboII	GAAGA	1 cut(s)	119
MhlI	GDGCHC	4 cut(s)	157, 418, 663, 807
MluCI	AATT	8 cut(s)	80, 465, 471, 516, 739, 798, 833, 857
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	4 cut(s)	197, 323, 375, 744
MspA1I	CMGCKG	2 cut(s)	167, 626
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 644
NcoI	CCATGG	1 cut(s)	665
NdeI	CATATG	3 cut(s)	283, 650, 700
NdeII	GATC	4 cut(s)	109, 293, 400, 769
NlaIII	CATG	5 cut(s)	138, 183, 335, 669, 987
NlaIV	GGNNCC	2 cut(s)	646, 662
NmuCI	GTSAC	4 cut(s)	118, 130, 277, 449
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	7 cut(s)	17, 94, 421, 535, 562, 605, 695
PkrI	GCNGC	4 cut(s)	166, 169, 172, 228
PscI	ACATGT	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	817
PspN4I	GGNNCC	2 cut(s)	646, 662
PspPI	GGNCC	1 cut(s)	936
PsrI	GAACNNNNNNTAC	2 cut(s)	956, 988
PstI	CTGCAG	1 cut(s)	682
PstNI	CAGNNNCTG	2 cut(s)	167, 170
PvuII	CAGCTG	2 cut(s)	167, 626
RsaI	GTAC	3 cut(s)	551, 710, 974
RsaNI	GTAC	3 cut(s)	550, 709, 973
SalI	GTCGAC	1 cut(s)	902
SaqAI	TTAA	4 cut(s)	197, 323, 375, 744
SatI	GCNGC	4 cut(s)	165, 168, 171, 227
Sau3AI	GATC	4 cut(s)	109, 293, 400, 769
Sau96I	GGNCC	1 cut(s)	936
ScaI	AGTACT	1 cut(s)	551
SduI	GDGCHC	4 cut(s)	157, 418, 663, 807
SetI	ASST	9 cut(s)	145, 169, 366, 532, 628, 640, 675, 820, 972
SfaNI	GCATC	3 cut(s)	58, 76, 427
SfcI	CTRYAG	1 cut(s)	678
Sse9I	AATT	8 cut(s)	80, 465, 471, 516, 739, 798, 833, 857
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	4 cut(s)	509, 527, 542, 1006
StyI	CCWWGG	2 cut(s)	526, 665
TaiI	ACGT	2 cut(s)	366, 820
TaqI	TCGA	2 cut(s)	296, 903
TasI	AATT	8 cut(s)	80, 465, 471, 516, 739, 798, 833, 857
TatI	WGTACW	2 cut(s)	549, 972
TfiI	GAWTC	7 cut(s)	17, 94, 421, 535, 562, 605, 695
Tru1I	TTAA	4 cut(s)	197, 323, 375, 744
Tru9I	TTAA	4 cut(s)	197, 323, 375, 744
TscAI	CASTG	4 cut(s)	687, 779, 812, 999
TseFI	GTSAC	4 cut(s)	118, 130, 277, 449
TseI	GCWGC	4 cut(s)	164, 167, 170, 226
Tsp45I	GTSAC	4 cut(s)	118, 130, 277, 449
TspDTI	ATGAA	4 cut(s)	168, 495, 687, 931
TspGWI	ACGGA	2 cut(s)	42, 106
TspRI	CASTG	4 cut(s)	687, 779, 812, 999
VneI	GTGCAC	1 cut(s)	803
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	4 cut(s)	509, 527, 542, 1006
ZrmI	AGTACT	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.