Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

54989246 .. 54993609

Gene Structure 4364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAAAGTTGAAAGCTTTCCCAGTAAGAGAGCCATTTCAGCCTTCAAACGGAGCTTTCATTCCGGCCACGTTTTGAAACAGTGTGTTTCCAATGTGAAACTGAGTAAAGAAGAGTTTGTGTCCAAATTGCTTGATAGAAGATGGACATTGCCTAGCCCTGATGCTAAAATTCACCAAATAATGCTTTCAACCAGCAAAGTACAACCACAACGAGGCAGACCCTTGTCTGATATTTCCTTATGGAACAATACTAACCCATGTTTTAGTCATTCTATGGCTGAAAAGGACGATTCTTTCTTTATTGTGAGGGATGATTTGTTGCATCCGTTGATAAATGGGAATAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTTGAAGATCATTCCGTGACTGATGTGGTGACATGTGGAGGTTCAACTTCGCTGACTTGTGTGTGCTTCAGCTGTTTCATGTTCAGAAAAAGGATTAAAACCGCATTTACTTCTACGAGGGAGCAGCCTGAAATACTGACAGGCTATAACTTGATGTCAACAATGTATGGCAATGTCACATATGTTCCAAGATCGCTTTATGCCAATAGGGAAAAGATGTTAAAGAGCCATGCTGATTATTTGGCAGGCAGTAGTGGTAACGTCCTTCGGTTTGATGATATTTTGGAGGCTTCTTTGAATCAAAGTGATGGTGCTCTGAATCTTTTGCAAAAGGATGCTAATAGAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGCGCAGGAGATGTTGTAGCATTACTAGGTTTGATTCGCCTAGTGCAGTACTTATCCCAGAATCACTTACTTGGAAAAGAGAGGGTCTTGAAGTTTGTTGTAGATTCTGGAACTGGGACAACAGCTGTTGGTTTAGCTCTTGGAGCCATATGTTTGGGGCTCCCATGGGAGGTAACTGCAGTGATGTTGGCTGATTCATATGATGCGTACAGACATCAGGAGAAGCGCTTGATATCCAATTTTAAGAGGCATTTTGATACTCATATTGATCACTGCTTCGATGATATAGACAAAGGAATTGTGCACTGGGTAGAACGTTGCCACCCGAGAAAATTTGGCAATGTATTGGAAGGGGAATTAGAGGCATGCCAACATATTGCACAACAAACTGGTATTTTAGTCGACCCAGTTTACACACTTTCTGCTTGGGAGATGGCAATGGCCCTTCATAAAAAGGAAGCAGAAGTTGAAGGAGGTGTACAAGTGGTCATGCTCCACACTGGAGGCACTCTAGGCATGTTTGGCTTAGCACAGAGGTACAAATCTTACTTCTCCAAGCTCAAAGTTGGTTCATCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

445

Amino Acids

49.7

Weight (kDa)

8.68

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1158
AciI	CCGC	1 cut(s)	477
AclI	AACGTT	1 cut(s)	1072
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	168, 1088
AcuI	CTGAAG	1 cut(s)	427
AfaI	GTAC	5 cut(s)	201, 806, 965, 1236, 1295
AfeI	AGCGCT	1 cut(s)	983
AfiI	CCNNNNNNNGG	3 cut(s)	48, 212, 925
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	9 cut(s)	11, 46, 76, 189, 380, 420, 673, 847, 1226
AluBI	AGCT	6 cut(s)	15, 54, 447, 881, 893, 1315
AluI	AGCT	6 cut(s)	15, 54, 447, 881, 893, 1315
Alw21I	GWGCWC	2 cut(s)	691, 1062
Alw44I	GTGCAC	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	1081
Aor51HI	AGCGCT	1 cut(s)	983
AoxI	GGCC	2 cut(s)	64, 1197
ApaLI	GTGCAC	1 cut(s)	1058
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	2 cut(s)	168, 1088
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	761, 984
AspS9I	GGNCC	1 cut(s)	1198
AsuHPI	GGTGA	2 cut(s)	164, 415
AvaI	CYCGRG	1 cut(s)	1081
BaeGI	GKGCMC	1 cut(s)	1062
BanII	GRGCYC	1 cut(s)	918
BarI	GAAGNNNNNNTAC	2 cut(s)	1218, 1250
Bbv12I	GWGCWC	2 cut(s)	691, 1062
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	4 cut(s)	135, 677, 735, 1183
BclI	TGATCA	1 cut(s)	1024
BfaI	CTAG	4 cut(s)	153, 782, 797, 1268
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	1 cut(s)	985
BisI	GCNGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	1282
BlsI	GCNGC	1 cut(s)	501
BmcAI	AGTACT	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	1081
BmgT120I	GGNCC	1 cut(s)	1198
BmiI	GGNNCC	2 cut(s)	901, 917
BmrI	ACTGGG	4 cut(s)	15, 879, 1072, 1157
BmsI	GCATC	5 cut(s)	151, 331, 349, 700, 949
BmuI	ACTGGG	4 cut(s)	15, 879, 1072, 1157
BoxI	GACNNNNGTC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	1278
Bpu1102I	GCTNAGC	1 cut(s)	1282
BsaJI	CCNNGG	2 cut(s)	731, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 212, 925
Bse1I	ACTGG	7 cut(s)	21, 874, 1067, 1150, 1163, 1261, 1332
Bse3DI	GCAATG	4 cut(s)	146, 553, 1102, 1200
BseDI	CCNNGG	2 cut(s)	731, 920
BseGI	GGATG	6 cut(s)	316, 322, 364, 715, 727, 1328
BseLI	CCNNNNNNNGG	3 cut(s)	48, 212, 925
BseMI	GCAATG	4 cut(s)	146, 553, 1102, 1200
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	7 cut(s)	21, 874, 1067, 1150, 1163, 1261, 1332
BseSI	GKGCMC	1 cut(s)	1062
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	821
BshFI	GGCC	2 cut(s)	66, 1199
BsiHKAI	GWGCWC	2 cut(s)	691, 1062
BsiHKCI	CYCGRG	1 cut(s)	1081
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	3 cut(s)	48, 212, 925
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	2 cut(s)	66, 1199
BsoBI	CYCGRG	1 cut(s)	1081
Bsp1286I	GDGCHC	3 cut(s)	691, 918, 1062
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	3 cut(s)	382, 566, 1024
Bsp1720I	GCTNAGC	1 cut(s)	1282
Bsp19I	CCATGG	1 cut(s)	920
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	66, 1199
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	901, 917
BspMAI	CTGCAG	1 cut(s)	937
BsrDI	GCAATG	4 cut(s)	146, 553, 1102, 1200
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	7 cut(s)	21, 874, 1067, 1150, 1163, 1261, 1332
BssECI	CCNNGG	2 cut(s)	731, 920
BssMI	GATC	3 cut(s)	382, 566, 1024
BssT1I	CCWWGG	1 cut(s)	920
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	1234
BstC8I	GCNNGC	2 cut(s)	622, 1123
BstDEI	CTNAG	2 cut(s)	101, 1282
BstDSI	CCRYGG	1 cut(s)	920
BstF5I	GGATG	6 cut(s)	316, 322, 364, 715, 727, 1328
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	2 cut(s)	761, 984
BstKTI	GATC	3 cut(s)	385, 569, 1027
BstMBI	GATC	3 cut(s)	382, 566, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 899, 1269, 1278
BstNSI	RCATGY	3 cut(s)	411, 1125, 1276
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	1062
BstV1I	GCAGC	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	910
BsuRI	GGCC	2 cut(s)	66, 1199
BtgI	CCRYGG	1 cut(s)	920
BtsCI	GGATG	6 cut(s)	316, 322, 364, 715, 727, 1328
BtsI	GCAGTG	2 cut(s)	942, 1027
BtsIMutI	CAGTG	5 cut(s)	86, 942, 1027, 1060, 1254
Cac8I	GCNNGC	2 cut(s)	622, 1123
CfoI	GCGC	2 cut(s)	761, 984
Cfr13I	GGNCC	1 cut(s)	1198
Csp6I	GTAC	5 cut(s)	200, 805, 964, 1235, 1294
CviAII	CATG	8 cut(s)	258, 408, 454, 605, 921, 1122, 1246, 1273
CviQI	GTAC	5 cut(s)	200, 805, 964, 1235, 1294
DdeI	CTNAG	2 cut(s)	101, 1282
DpnI	GATC	3 cut(s)	384, 568, 1026
DpnII	GATC	3 cut(s)	382, 566, 1024
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	920
Eco24I	GRGCYC	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	990
Eco47III	AGCGCT	1 cut(s)	983
Eco57I	CTGAAG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	1081
EcoRV	GATATC	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	920
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	8 cut(s)	261, 411, 457, 608, 924, 1125, 1249, 1276
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	8 cut(s)	257, 407, 453, 604, 920, 1121, 1245, 1272
FauNDI	CATATG	3 cut(s)	556, 905, 955
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	1158
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	6 cut(s)	309, 323, 371, 714, 722, 1315
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	4 cut(s)	153, 782, 797, 1268
GlaI	GCGC	2 cut(s)	760, 983
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	1278
HaeII	RGCGCY	1 cut(s)	985
HaeIII	GGCC	2 cut(s)	66, 1199
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	2 cut(s)	761, 984
Hin1II	CATG	8 cut(s)	261, 411, 457, 608, 924, 1125, 1249, 1276
Hin6I	GCGC	2 cut(s)	759, 982
HinP1I	GCGC	2 cut(s)	759, 982
HincII	GTYRAC	2 cut(s)	534, 1159
HindII	GTYRAC	2 cut(s)	534, 1159
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	8 cut(s)	290, 367, 673, 694, 790, 817, 860, 950
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	164, 415
Hpy166II	GTNNAC	5 cut(s)	534, 1060, 1159, 1168, 1235
Hpy188I	TCNGA	4 cut(s)	229, 461, 693, 735
Hpy188III	TCNNGA	3 cut(s)	844, 864, 974
Hpy8I	GTNNAC	5 cut(s)	534, 1060, 1159, 1168, 1235
HpyAV	CCTTC	6 cut(s)	52, 650, 749, 1100, 1211, 1220
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	3 cut(s)	69, 636, 1072
HpyCH4V	TGCA	7 cut(s)	322, 362, 703, 802, 935, 1060, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 899, 1269, 1278
HpyF3I	CTNAG	2 cut(s)	101, 1282
HpySE526I	ACGT	3 cut(s)	69, 636, 1072
Hsp92II	CATG	8 cut(s)	261, 411, 457, 608, 924, 1125, 1249, 1276
HspAI	GCGC	2 cut(s)	759, 982
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	3 cut(s)	382, 566, 1024
LmnI	GCTCC	5 cut(s)	51, 496, 899, 921, 1254
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	5 cut(s)	151, 331, 349, 700, 949
MaeI	CTAG	4 cut(s)	153, 782, 797, 1268
MaeII	ACGT	3 cut(s)	69, 636, 1072
MaeIII	GTNAC	6 cut(s)	391, 403, 550, 632, 722, 928
MalI	GATC	3 cut(s)	384, 568, 1026
MboI	GATC	3 cut(s)	382, 566, 1024
MboII	GAAGA	3 cut(s)	122, 150, 392
MhlI	GDGCHC	3 cut(s)	691, 918, 1062
MluCI	AATT	9 cut(s)	125, 168, 353, 738, 744, 994, 1053, 1088, 1112
Mph1103I	ATGCAT	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	4 cut(s)	471, 596, 999, 1336
MspA1I	CMGCKG	2 cut(s)	447, 881
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	38, 899, 1269, 1278
NcoI	CCATGG	1 cut(s)	920
NdeI	CATATG	3 cut(s)	556, 905, 955
NdeII	GATC	3 cut(s)	382, 566, 1024
NlaIII	CATG	8 cut(s)	261, 411, 457, 608, 924, 1125, 1249, 1276
NlaIV	GGNNCC	2 cut(s)	901, 917
NmuCI	GTSAC	4 cut(s)	391, 403, 550, 722
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	3 cut(s)	411, 1125, 1276
PaeI	GCATGC	1 cut(s)	1125
PciI	ACATGT	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	8 cut(s)	290, 367, 673, 694, 790, 817, 860, 950
PkrI	GCNGC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	407
PshAI	GACNNNNGTC	1 cut(s)	223
Psp1406I	AACGTT	1 cut(s)	1072
PspN4I	GGNNCC	2 cut(s)	901, 917
PspPI	GGNCC	1 cut(s)	1198
PstI	CTGCAG	1 cut(s)	937
PvuII	CAGCTG	2 cut(s)	447, 881
RsaI	GTAC	5 cut(s)	201, 806, 965, 1236, 1295
RsaNI	GTAC	5 cut(s)	200, 805, 964, 1235, 1294
SalI	GTCGAC	1 cut(s)	1157
SaqAI	TTAA	4 cut(s)	471, 596, 999, 1336
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	3 cut(s)	382, 566, 1024
Sau96I	GGNCC	1 cut(s)	1198
ScaI	AGTACT	1 cut(s)	806
SduI	GDGCHC	3 cut(s)	691, 918, 1062
SfaNI	GCATC	5 cut(s)	151, 331, 349, 700, 949
SfcI	CTRYAG	1 cut(s)	933
SphI	GCATGC	1 cut(s)	1125
Sse9I	AATT	9 cut(s)	125, 168, 353, 738, 744, 994, 1053, 1088, 1112
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	4 cut(s)	153, 782, 797, 1268
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	3 cut(s)	72, 639, 1075
TaqI	TCGA	2 cut(s)	1035, 1158
TasI	AATT	9 cut(s)	125, 168, 353, 738, 744, 994, 1053, 1088, 1112
TatI	WGTACW	3 cut(s)	199, 804, 1234
TfiI	GAWTC	8 cut(s)	290, 367, 673, 694, 790, 817, 860, 950
Tru1I	TTAA	4 cut(s)	471, 596, 999, 1336
Tru9I	TTAA	4 cut(s)	471, 596, 999, 1336
TscAI	CASTG	5 cut(s)	86, 942, 1034, 1067, 1261
TseFI	GTSAC	4 cut(s)	391, 403, 550, 722
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	4 cut(s)	391, 403, 550, 722
TspDTI	ATGAA	7 cut(s)	17, 47, 442, 768, 942, 1193, 1317
TspGWI	ACGGA	3 cut(s)	64, 315, 379
TspRI	CASTG	5 cut(s)	86, 942, 1034, 1067, 1261
VneI	GTGCAC	1 cut(s)	1058
XapI	RAATTY	2 cut(s)	168, 1088
XceI	RCATGY	3 cut(s)	411, 1125, 1276
XmiI	GTMKAC	1 cut(s)	1158
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	4 cut(s)	153, 782, 797, 1268
ZrmI	AGTACT	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.