Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016445.1

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1101

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

atggcagaaaaggacgattctttctttattgtgagggatgatttgttgcatccgttgataaatgggaataaagcaagaaaattggatgcattgattccccttgttgaagatcattccgtgactgatgtggtgacatgtggaggttgtcaaagtgcccatacagcagctgttgccgtttcatgttcagaaagaggattaaaaccgcatttacttctacgaggggagcagcctgaaatactgacaggctataacttgatgtcaacaatatatggcaatgtcacatatgttccaagatcgctttatgccaatagggaaaagatgttaaagagccatgctgattatttggcaggcagtagtggtaacgtcctttggtttgatgatattttggaggcctctttgaatcaaagtgatggtgctctgaatcttttgcaaaaggatgctaatagaagagaccatcctcggaaaattgtaattgtcaatgaaggcgcaggagatgttgtagcattactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

170

Amino Acids

18.6

Weight (kDa)

5.62

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	107, 400
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	164, 226
AspLEI	GCGC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	176, 238
BccI	CCATC	2 cut(s)	404, 462
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	2 cut(s)	165, 227
BlsI	GCNGC	2 cut(s)	166, 228
BmsI	GCATC	3 cut(s)	58, 76, 427
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	458
BsaXI	ACNNNNNCTCC	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	5 cut(s)	43, 49, 91, 442, 454
BseMI	GCAATG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	176, 238
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	157, 418
Bsp143I	GATC	2 cut(s)	109, 293
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	109, 293
Bst6I	CTCTTC	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	349
BstF5I	GGATG	5 cut(s)	43, 49, 91, 442, 454
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	112, 296
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	109, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstNSI	RCATGY	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	176, 238
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	5 cut(s)	43, 49, 91, 442, 454
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	488
CviAII	CATG	3 cut(s)	135, 180, 332
CviJI	RGCY	5 cut(s)	167, 229, 246, 330, 392
CviKI_1	RGCY	5 cut(s)	167, 229, 246, 330, 392
DpnI	GATC	2 cut(s)	111, 295
DpnII	GATC	2 cut(s)	109, 293
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	91
FaeI	CATG	3 cut(s)	138, 183, 335
FatI	CATG	3 cut(s)	134, 179, 331
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	165, 227
FokI	GGATG	5 cut(s)	36, 50, 98, 441, 449
Fsp4HI	GCNGC	2 cut(s)	165, 227
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	2 cut(s)	165, 227
HaeIII	GGCC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	138, 183, 335
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	17, 94, 400, 421
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	3 cut(s)	187, 420, 462
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	49, 89, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	138, 183, 335
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	109, 293
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	228, 243, 333, 474
Lsp1109I	GCAGC	2 cut(s)	176, 238
LweI	GCATC	3 cut(s)	58, 76, 427
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	118, 130, 277, 359
MalI	GATC	2 cut(s)	111, 295
MboI	GATC	2 cut(s)	109, 293
MboII	GAAGA	2 cut(s)	119, 459
MhlI	GDGCHC	2 cut(s)	157, 418
MluCI	AATT	3 cut(s)	80, 465, 471
MnlI	CCTC	7 cut(s)	27, 134, 185, 212, 382, 403, 468
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	197, 323
MspA1I	CMGCKG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	2 cut(s)	109, 293
NlaIII	CATG	3 cut(s)	138, 183, 335
NmuCI	GTSAC	3 cut(s)	118, 130, 277
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	392
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	4 cut(s)	17, 94, 400, 421
PkrI	GCNGC	2 cut(s)	166, 228
PscI	ACATGT	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	197, 323
SatI	GCNGC	2 cut(s)	165, 227
Sau3AI	GATC	2 cut(s)	109, 293
SduI	GDGCHC	2 cut(s)	157, 418
SetI	ASST	3 cut(s)	145, 169, 366
SfaNI	GCATC	3 cut(s)	58, 76, 427
Sse9I	AATT	3 cut(s)	80, 465, 471
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	392
TaiI	ACGT	1 cut(s)	366
TasI	AATT	3 cut(s)	80, 465, 471
TfiI	GAWTC	4 cut(s)	17, 94, 400, 421
Tru1I	TTAA	2 cut(s)	197, 323
Tru9I	TTAA	2 cut(s)	197, 323
TseFI	GTSAC	3 cut(s)	118, 130, 277
TseI	GCWGC	2 cut(s)	164, 226
Tsp45I	GTSAC	3 cut(s)	118, 130, 277
TspDTI	ATGAA	2 cut(s)	168, 495
TspGWI	ACGGA	2 cut(s)	42, 106
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.