Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Reverse (-)

11006627 .. 11009402

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCTTTCAACCAGCAAAGTACAACCACAACCAGGCAGACCCTTGTCTGGTATTTCCTTCTGGAACAATACTAACCCATGTTTTAGTCATTCTATGGCGGAAAAGGACGATTCTTTCTTTATTGTGAGGGATGATTTGTTGCATCCGTTGATAAATGGGAATAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTCGAAGATCATTCCGTGACTGATGTGGTGACATGTGGAGGTTGTCAAAGTGCCCATACAGCAGCTGTTGCCGTTTCATGTTCAGAAAGAGGATTAAAACCGCATTTACTTCTACGAGGGGAGCAGCCTGAAACACTGACAGGCTATAACTTGATGTCAACAATATATGGCAATGTCACATATGTTCCAAGATCGCTTTATGCCAATAGGGAAAAGATGTTAAAGAGCCATGCTGATTATTTGGCAGGCAGTAGTGGTAGCGTCCTTCGGTTTGATGATATTTTGGAGGCTTCTTTGAATCAAAGTGATGGTGCTCTGAATCTTTTGCAAAAGGATGCTAATAAAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGCGCAGGAGATGTTGTAGCATTACTAGGTTTGATTCGCCTAGTGCAGTACTTATCCCAGAATCACTTACTTGGAAAAGAGAGGGTCTTGAAGTTTGTTGTAGATTCTGGAACTGGGACAACAGCTGTTGGTTTGGCTCTTGGAGCCATATGTTTGGGGCTCCCATGGGAGGTAACTGCAGTGATGTTGGCTGATTCATATGATGGGTACAGACATCAGGAGAAGCGCTTGATATCCAATTTTAAGAGGCATTTTGATACTCATATTGATCACTGCTTCGATGATATAGACAAAGGAATTGTGCACTGGGTAGAACGTTGCCACCCGAGAAAATTTGGCAATGTATTGGAAGGGGAATTAGAGGCATGCCAACATATTGCACAACAAACTGGTATTTTAGTCGACCCAGTTTACACACTTTCTGCTTGGGAGATGGCAATGGTCCTTCCTAAAAAGAAAGCAGAAGTTGAAGGAGGTGTAAAAGTGGTCGTGCTCCACACTGGAGGCACTCTAGGCATGTTTGGATTAGCACAGAGGTACAAATCTTACTTCTCCAAGCTCAAAGTTGGATCATCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

386

Amino Acids

42.28

Weight (kDa)

6.96

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	40 - 360	3.2e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	2 cut(s)	98, 296
AclI	AACGTT	1 cut(s)	892
AclWI	GGATC	1 cut(s)	1153
AcsI	RAATTY	1 cut(s)	908
AfaI	GTAC	4 cut(s)	21, 626, 785, 1115
AfeI	AGCGCT	1 cut(s)	803
AfiI	CCNNNNNNNGG	3 cut(s)	32, 47, 745
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	9, 493, 667, 1046
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	260, 701, 1135
AluI	AGCT	3 cut(s)	260, 701, 1135
Alw21I	GWGCWC	3 cut(s)	511, 882, 1071
Alw44I	GTGCAC	1 cut(s)	878
AlwI	GGATC	1 cut(s)	1153
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	901
Aor51HI	AGCGCT	1 cut(s)	803
ApaLI	GTGCAC	1 cut(s)	878
ApeKI	GCWGC	2 cut(s)	257, 319
ApoI	RAATTY	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	581, 804
AspS9I	GGNCC	1 cut(s)	1018
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	1018
BaeGI	GKGCMC	2 cut(s)	250, 882
BanII	GRGCYC	1 cut(s)	738
Bbv12I	GWGCWC	3 cut(s)	511, 882, 1071
BbvI	GCAGC	2 cut(s)	269, 331
BccI	CCATC	4 cut(s)	497, 555, 773, 1003
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	844
BfaI	CTAG	3 cut(s)	602, 617, 1088
BfmI	CTRYAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	805
BisI	GCNGC	2 cut(s)	258, 320
BlsI	GCNGC	2 cut(s)	259, 321
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	1018
BmeT110I	CYCGRG	1 cut(s)	901
BmgT120I	GGNCC	1 cut(s)	1018
BmiI	GGNNCC	2 cut(s)	721, 737
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	3 cut(s)	699, 892, 977
BmsI	GCATC	3 cut(s)	151, 169, 520
BmuI	ACTGGG	3 cut(s)	699, 892, 977
BoxI	GACNNNNGTC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	1098
BsaJI	CCNNGG	2 cut(s)	551, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 47, 745
Bse1I	ACTGG	5 cut(s)	694, 887, 970, 983, 1081
Bse3DI	GCAATG	3 cut(s)	373, 922, 1020
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	551, 740
BseGI	GGATG	6 cut(s)	136, 142, 184, 535, 547, 1148
BseLI	CCNNNNNNNGG	3 cut(s)	32, 47, 745
BseMI	GCAATG	3 cut(s)	373, 922, 1020
BseNI	ACTGG	5 cut(s)	694, 887, 970, 983, 1081
BseSI	GKGCMC	2 cut(s)	250, 882
BseXI	GCAGC	2 cut(s)	269, 331
BsgI	GTGCAG	1 cut(s)	641
BsiHKAI	GWGCWC	3 cut(s)	511, 882, 1071
BsiHKCI	CYCGRG	1 cut(s)	901
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	3 cut(s)	32, 47, 745
BsmFI	GGGAC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	5 cut(s)	250, 511, 738, 882, 1071
Bsp143I	GATC	4 cut(s)	202, 386, 844, 1145
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	2 cut(s)	98, 296
BspLI	GGNNCC	2 cut(s)	721, 737
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	1153
BsrDI	GCAATG	3 cut(s)	373, 922, 1020
BsrI	ACTGG	5 cut(s)	694, 887, 970, 983, 1081
BssECI	CCNNGG	2 cut(s)	551, 740
BssMI	GATC	4 cut(s)	202, 386, 844, 1145
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	442, 943
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	6 cut(s)	136, 142, 184, 535, 547, 1148
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	2 cut(s)	581, 804
BstKTI	GATC	4 cut(s)	205, 389, 847, 1148
BstMBI	GATC	4 cut(s)	202, 386, 844, 1145
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 263, 719, 1089
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	3 cut(s)	231, 945, 1096
BstPAI	GACNNNNGTC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	2 cut(s)	250, 882
BstV1I	GCAGC	2 cut(s)	269, 331
BstXI	CCANNNNNNTGG	1 cut(s)	730
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	6 cut(s)	136, 142, 184, 535, 547, 1148
BtsI	GCAGTG	2 cut(s)	762, 847
BtsIMutI	CAGTG	5 cut(s)	329, 762, 847, 880, 1074
Cac8I	GCNNGC	2 cut(s)	442, 943
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	2 cut(s)	581, 804
Cfr13I	GGNCC	1 cut(s)	1018
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	4 cut(s)	20, 625, 784, 1114
CviAII	CATG	7 cut(s)	78, 228, 273, 425, 741, 942, 1093
CviQI	GTAC	4 cut(s)	20, 625, 784, 1114
DpnI	GATC	4 cut(s)	204, 388, 846, 1147
DpnII	GATC	4 cut(s)	202, 386, 844, 1145
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	1018
Eco47III	AGCGCT	1 cut(s)	803
Eco88I	CYCGRG	1 cut(s)	901
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	7 cut(s)	81, 231, 276, 428, 744, 945, 1096
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	7 cut(s)	77, 227, 272, 424, 740, 941, 1092
FauNDI	CATATG	3 cut(s)	376, 725, 775
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	2 cut(s)	258, 320
FokI	GGATG	6 cut(s)	129, 143, 191, 534, 542, 1135
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	2 cut(s)	258, 320
FspBI	CTAG	3 cut(s)	602, 617, 1088
GlaI	GCGC	2 cut(s)	580, 803
GluI	GCNGC	2 cut(s)	258, 320
GsuI	CTGGAG	1 cut(s)	1098
HaeII	RGCGCY	1 cut(s)	805
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	2 cut(s)	581, 804
Hin1II	CATG	7 cut(s)	81, 231, 276, 428, 744, 945, 1096
Hin6I	GCGC	2 cut(s)	579, 802
HinP1I	GCGC	2 cut(s)	579, 802
HincII	GTYRAC	2 cut(s)	354, 979
HindII	GTYRAC	2 cut(s)	354, 979
HinfI	GANTC	8 cut(s)	110, 187, 493, 514, 610, 637, 680, 770
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	4 cut(s)	354, 880, 979, 988
Hpy188I	TCNGA	3 cut(s)	280, 513, 555
Hpy188III	TCNNGA	4 cut(s)	61, 664, 684, 794
Hpy8I	GTNNAC	4 cut(s)	354, 880, 979, 988
HpyAV	CCTTC	6 cut(s)	67, 470, 569, 920, 1031, 1040
HpyCH4IV	ACGT	1 cut(s)	892
HpyCH4V	TGCA	7 cut(s)	142, 182, 523, 622, 755, 880, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 263, 719, 1089
HpySE526I	ACGT	1 cut(s)	892
Hsp92II	CATG	7 cut(s)	81, 231, 276, 428, 744, 945, 1096
HspAI	GCGC	2 cut(s)	579, 802
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	202, 386, 844, 1145
LmnI	GCTCC	4 cut(s)	316, 719, 741, 1074
Lsp1109I	GCAGC	2 cut(s)	269, 331
LweI	GCATC	3 cut(s)	151, 169, 520
MaeI	CTAG	3 cut(s)	602, 617, 1088
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	5 cut(s)	211, 223, 370, 542, 748
MalI	GATC	4 cut(s)	204, 388, 846, 1147
MboI	GATC	4 cut(s)	202, 386, 844, 1145
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	5 cut(s)	250, 511, 738, 882, 1071
MluCI	AATT	7 cut(s)	173, 558, 564, 814, 873, 908, 932
MmeI	TCCRAC	1 cut(s)	1123
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	4 cut(s)	290, 416, 819, 1156
MspA1I	CMGCKG	2 cut(s)	260, 701
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	254, 263, 719, 1089
NcoI	CCATGG	1 cut(s)	740
NdeI	CATATG	3 cut(s)	376, 725, 775
NdeII	GATC	4 cut(s)	202, 386, 844, 1145
NlaIII	CATG	7 cut(s)	81, 231, 276, 428, 744, 945, 1096
NlaIV	GGNNCC	2 cut(s)	721, 737
NmuCI	GTSAC	4 cut(s)	211, 223, 370, 542
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	3 cut(s)	231, 945, 1096
PaeI	GCATGC	1 cut(s)	945
PciI	ACATGT	1 cut(s)	227
PfeI	GAWTC	8 cut(s)	110, 187, 493, 514, 610, 637, 680, 770
PkrI	GCNGC	2 cut(s)	259, 321
PscI	ACATGT	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	721, 737
PspPI	GGNCC	1 cut(s)	1018
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	260, 701
RsaI	GTAC	4 cut(s)	21, 626, 785, 1115
RsaNI	GTAC	4 cut(s)	20, 625, 784, 1114
SalI	GTCGAC	1 cut(s)	977
SaqAI	TTAA	4 cut(s)	290, 416, 819, 1156
SatI	GCNGC	2 cut(s)	258, 320
Sau3AI	GATC	4 cut(s)	202, 386, 844, 1145
Sau96I	GGNCC	1 cut(s)	1018
ScaI	AGTACT	1 cut(s)	626
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	5 cut(s)	250, 511, 738, 882, 1071
SetI	ASST	9 cut(s)	238, 262, 607, 703, 750, 895, 1054, 1115, 1137
SfaNI	GCATC	3 cut(s)	151, 169, 520
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	1018
SphI	GCATGC	1 cut(s)	945
Sse9I	AATT	7 cut(s)	173, 558, 564, 814, 873, 908, 932
SsiI	CCGC	2 cut(s)	98, 296
SspMI	CTAG	3 cut(s)	602, 617, 1088
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	740
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	3 cut(s)	198, 855, 978
TasI	AATT	7 cut(s)	173, 558, 564, 814, 873, 908, 932
TatI	WGTACW	2 cut(s)	19, 624
TfiI	GAWTC	8 cut(s)	110, 187, 493, 514, 610, 637, 680, 770
Tru1I	TTAA	4 cut(s)	290, 416, 819, 1156
Tru9I	TTAA	4 cut(s)	290, 416, 819, 1156
TscAI	CASTG	5 cut(s)	336, 762, 854, 887, 1081
TseFI	GTSAC	4 cut(s)	211, 223, 370, 542
TseI	GCWGC	2 cut(s)	257, 319
Tsp45I	GTSAC	4 cut(s)	211, 223, 370, 542
TspDTI	ATGAA	3 cut(s)	261, 588, 762
TspGWI	ACGGA	2 cut(s)	135, 199
TspRI	CASTG	5 cut(s)	336, 762, 854, 887, 1081
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	1018
XapI	RAATTY	1 cut(s)	908
XceI	RCATGY	3 cut(s)	231, 945, 1096
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	3 cut(s)	602, 617, 1088
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.