Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

53749290 .. 53752092

Gene Structure 2803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTTCAATTTTTGCGTTCACATAATATTTGACAAACGCTTTAATCCTTATTGTCAGTGTGTTTCCAATGTGAAACTGAGTAAAGAAGAGTTTGTGTCCAAATTGCTTGATAGAAGATGGACATTGCCTAGCCCTGATGCTAAAATTCACCAAATAATGCTTTCAACCAGCAAAGCACAACCACAACCAGGCAGACCCTTGTCTGATATTTCCTTCTGGAACAATACTAACCCATGTTTTAGTCATTCTATGGCAGAAAAGGACGATTCTTTCTTTATTGTGAGGGATGATTTGTTGCATCCGTTGATAAATGGGAATAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTTGCAGATCATTCCGTGACTGATGTGGTGACATGTGGAGGTTGTCAAAGTGCCCATACAGCAGCTGTTGCCGTTTCATGTTCAGAAAGAGGATTAAAACCGCATTTACTTCTACGAGGGGAGCAGCCTGAAATACTGACAGGCTATAACTTGATGTCAACAATATATGGCAATGTCACATATGTTCCAAGATCGCTTTATGCCAATAGGGAAAAGATGTTAAAGAGCCATGCTGATTATTTGGCAGGCAGTAGTGGTAACGTCCTTCGGTTTGATGATATTTTGGAGGCCTCTTTGAATCAAAGTGATGGTGCTCTGAATCTTTTGCAAAAGGATGCTAATAGAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGCGCAGGAGATGTTGTAGCATTACTAGGTAACCTAAGTCAATTCAGAACAGAGAATCATCTTATTGCTTCCATATGTACATATTGGCATCATGTTCAGTTAGCAGGATCATGGTTTATAGACCAAGCCCCTAACATGCCCCTTAGCTTTCATATCTTGAATTGTCCACATCTTCTGAGTCATTGGTGTTACTTTATCCTTGTTTGTGTGGTTCTATTGAGAATGAAGTTTGCACTATTATGTGTGGCCTTGAAAATGCCTCCACATAGTTATGATCATCATTGTTGTCGGCTCATTGCTAGGGAAATGCATGGGTCTAGTTTAGGGTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

355

Amino Acids

39.88

Weight (kDa)

7.93

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	847
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	7, 165, 649, 892, 985
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	416, 879
AluI	AGCT	2 cut(s)	416, 879
Alw21I	GWGCWC	1 cut(s)	667
AlwI	GGATC	1 cut(s)	847
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	639, 978
ApeKI	GCWGC	2 cut(s)	413, 475
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	140, 391
BaeGI	GKGCMC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	425, 487
BccI	CCATC	3 cut(s)	111, 653, 711
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	1006
BfaI	CTAG	4 cut(s)	129, 758, 1032, 1050
BisI	GCNGC	2 cut(s)	414, 476
BlsI	GCNGC	2 cut(s)	415, 477
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	5 cut(s)	127, 307, 325, 676, 829
BoxI	GACNNNNGTC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	875
BsaJI	CCNNGG	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse3DI	GCAATG	3 cut(s)	122, 529, 1026
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	5 cut(s)	292, 298, 340, 691, 703
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	3 cut(s)	122, 529, 1026
BseMII	CTCAG	2 cut(s)	68, 899
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	425, 487
BshFI	GGCC	2 cut(s)	641, 980
BsiHKAI	GWGCWC	1 cut(s)	667
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	2 cut(s)	641, 980
Bsp1286I	GDGCHC	2 cut(s)	406, 667
Bsp1407I	TGTACA	1 cut(s)	809
Bsp143I	GATC	4 cut(s)	358, 542, 839, 1006
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	2 cut(s)	641, 980
BspCNI	CTCAG	2 cut(s)	69, 900
BspPI	GGATC	1 cut(s)	847
BsrDI	GCAATG	3 cut(s)	122, 529, 1026
BsrGI	TGTACA	1 cut(s)	809
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	4 cut(s)	358, 542, 839, 1006
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstAUI	TGTACA	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	4 cut(s)	77, 767, 875, 908
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	5 cut(s)	292, 298, 340, 691, 703
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	4 cut(s)	361, 545, 842, 1009
BstMBI	GATC	4 cut(s)	358, 542, 839, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 419
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	387, 871
BstPAI	GACNNNNGTC	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	425, 487
BsuRI	GGCC	2 cut(s)	641, 980
BtsCI	GGATG	5 cut(s)	292, 298, 340, 691, 703
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	8 cut(s)	234, 384, 429, 581, 824, 843, 868, 1043
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	4 cut(s)	77, 767, 875, 908
DpnI	GATC	4 cut(s)	360, 544, 841, 1008
DpnII	GATC	4 cut(s)	358, 542, 839, 1006
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	641
Eco91I	GGTNACC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	187
EcoT22I	ATGCAT	2 cut(s)	340, 1044
FaeI	CATG	8 cut(s)	237, 387, 432, 584, 827, 846, 871, 1046
FatI	CATG	8 cut(s)	233, 383, 428, 580, 823, 842, 867, 1042
FauNDI	CATATG	2 cut(s)	532, 806
FbaI	TGATCA	1 cut(s)	1006
Fnu4HI	GCNGC	2 cut(s)	414, 476
FokI	GGATG	5 cut(s)	285, 299, 347, 690, 698
Fsp4HI	GCNGC	2 cut(s)	414, 476
FspBI	CTAG	4 cut(s)	129, 758, 1032, 1050
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	2 cut(s)	414, 476
HaeIII	GGCC	2 cut(s)	641, 980
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	8 cut(s)	237, 387, 432, 584, 827, 846, 871, 1046
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	6 cut(s)	266, 343, 649, 670, 787, 910
HphI	GGTGA	2 cut(s)	140, 391
Hpy166II	GTNNAC	3 cut(s)	19, 510, 899
Hpy188I	TCNGA	6 cut(s)	205, 436, 669, 711, 779, 909
Hpy188III	TCNNGA	2 cut(s)	217, 889
Hpy8I	GTNNAC	3 cut(s)	19, 510, 899
HpyAV	CCTTC	3 cut(s)	223, 626, 725
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	298, 338, 356, 679, 965, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 419
HpyF3I	CTNAG	4 cut(s)	77, 767, 875, 908
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	8 cut(s)	237, 387, 432, 584, 827, 846, 871, 1046
HspAI	GCGC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	4 cut(s)	358, 542, 839, 1006
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	2 cut(s)	425, 487
LweI	GCATC	5 cut(s)	127, 307, 325, 676, 829
MaeI	CTAG	4 cut(s)	129, 758, 1032, 1050
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	7 cut(s)	367, 379, 526, 608, 698, 761, 920
MalI	GATC	4 cut(s)	360, 544, 841, 1008
MboI	GATC	4 cut(s)	358, 542, 839, 1006
MboII	GAAGA	3 cut(s)	98, 126, 896
MhlI	GDGCHC	2 cut(s)	406, 667
MluCI	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 773, 892
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	8 cut(s)	276, 383, 434, 461, 631, 652, 717, 1002
Mph1103I	ATGCAT	2 cut(s)	340, 1044
MseI	TTAA	3 cut(s)	42, 446, 572
MslI	CAYNNNNRTG	2 cut(s)	970, 1002
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	410, 419
NdeI	CATATG	2 cut(s)	532, 806
NdeII	GATC	4 cut(s)	358, 542, 839, 1006
NlaIII	CATG	8 cut(s)	237, 387, 432, 584, 827, 846, 871, 1046
NmuCI	GTSAC	4 cut(s)	367, 379, 526, 698
NsiI	ATGCAT	2 cut(s)	340, 1044
NspI	RCATGY	2 cut(s)	387, 871
PceI	AGGCCT	1 cut(s)	641
PciI	ACATGT	1 cut(s)	383
PfeI	GAWTC	5 cut(s)	266, 343, 649, 670, 787
PkrI	GCNGC	2 cut(s)	415, 477
PleI	GAGTC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	918
PscI	ACATGT	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
RseI	CAYNNNNRTG	2 cut(s)	970, 1002
SaqAI	TTAA	3 cut(s)	42, 446, 572
SatI	GCNGC	2 cut(s)	414, 476
Sau3AI	GATC	4 cut(s)	358, 542, 839, 1006
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	406, 667
SetI	ASST	6 cut(s)	394, 418, 615, 763, 768, 881
SfaNI	GCATC	5 cut(s)	127, 307, 325, 676, 829
SmiMI	CAYNNNNRTG	2 cut(s)	970, 1002
Sse9I	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 773, 892
SseBI	AGGCCT	1 cut(s)	641
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	4 cut(s)	129, 758, 1032, 1050
StuI	AGGCCT	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	1 cut(s)	615
TasI	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 773, 892
TatI	WGTACW	1 cut(s)	809
TfiI	GAWTC	5 cut(s)	266, 343, 649, 670, 787
Tru1I	TTAA	3 cut(s)	42, 446, 572
Tru9I	TTAA	3 cut(s)	42, 446, 572
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	4 cut(s)	367, 379, 526, 698
TseI	GCWGC	2 cut(s)	413, 475
Tsp45I	GTSAC	4 cut(s)	367, 379, 526, 698
TspDTI	ATGAA	4 cut(s)	417, 744, 872, 971
TspGWI	ACGGA	2 cut(s)	291, 355
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	2 cut(s)	387, 871
XspI	CTAG	4 cut(s)	129, 758, 1032, 1050
Zsp2I	ATGCAT	2 cut(s)	340, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.