Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266185.1

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 800

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

tgattcgcctagcgcagtacttatcccagaatcacttacttggaaaagagagggtcttgaagtttgttgtagattctggaactgggacaacagctgttggtttagctcttggagccatatgtttggggctcccatgggaggtaactgcagtgatgttggctgattcatatgatgggtacagacatcaggagaagcgcttgatatccaattttaagaggcattttgatactcatattgattactgcttcgatgatatagacaaaggaatagtgcactgggtagaacgttgccacccgagaaaatttggcaatgtattggaaggggaattagaggcatgccaacatattgcacaacaaactggtattttagtcgacccagtttacacactttctgcttgggagatggcaatggcccttcataaaaaggaagcagaagttgaaggaggtgtacaagtggtcatgctccacactggaggcactctaggcatgtttggattagcacagaggtacaaatcttacttctccaagctcaaagttggatcatccagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

182

Amino Acids

20.31

Weight (kDa)

6.82

Isoelectric Point (pI)

21.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	371
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	4 cut(s)	19, 178, 449, 508
AfeI	AGCGCT	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	60, 439
AluBI	AGCT	3 cut(s)	94, 106, 528
AluI	AGCT	3 cut(s)	94, 106, 528
Alw21I	GWGCWC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	294
Aor51HI	AGCGCT	1 cut(s)	196
AoxI	GGCC	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	15, 197
AspS9I	GGNCC	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
Bbv12I	GWGCWC	1 cut(s)	275
BccI	CCATC	2 cut(s)	166, 396
BfaI	CTAG	2 cut(s)	10, 481
BfmI	CTRYAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	198
BmcAI	AGTACT	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	114, 130
BmrI	ACTGGG	3 cut(s)	92, 285, 370
BmuI	ACTGGG	3 cut(s)	92, 285, 370
BpmI	CTGGAG	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	6 cut(s)	87, 280, 363, 376, 474, 545
Bse3DI	GCAATG	2 cut(s)	315, 413
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	315, 413
BseNI	ACTGG	6 cut(s)	87, 280, 363, 376, 474, 545
BseSI	GKGCMC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	131, 275
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	133
BspANI	GGCC	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	114, 130
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	546
BsrDI	GCAATG	2 cut(s)	315, 413
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	6 cut(s)	87, 280, 363, 376, 474, 545
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	541
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	15, 197
BstKTI	GATC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 482
BstNSI	RCATGY	2 cut(s)	338, 489
BstSFI	CTRYAG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	3 cut(s)	155, 273, 467
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	2 cut(s)	15, 197
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	4 cut(s)	18, 177, 448, 507
CviAII	CATG	4 cut(s)	134, 335, 459, 486
CviJI	RGCY	7 cut(s)	94, 106, 115, 129, 160, 412, 528
CviKI_1	RGCY	7 cut(s)	94, 106, 115, 129, 160, 412, 528
CviQI	GTAC	4 cut(s)	18, 177, 448, 507
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	203
Eco47III	AGCGCT	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	137, 338, 462, 489
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	133, 334, 458, 485
FauNDI	CATATG	2 cut(s)	118, 168
FblI	GTMKAC	1 cut(s)	371
FokI	GGATG	1 cut(s)	528
FriOI	GRGCYC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	10, 481
GlaI	GCGC	2 cut(s)	14, 196
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	412
HhaI	GCGC	2 cut(s)	15, 197
Hin1II	CATG	4 cut(s)	137, 338, 462, 489
Hin6I	GCGC	2 cut(s)	13, 195
HinP1I	GCGC	2 cut(s)	13, 195
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	3, 30, 73, 163
Hpy166II	GTNNAC	4 cut(s)	273, 372, 381, 448
Hpy188III	TCNNGA	3 cut(s)	57, 77, 187
Hpy8I	GTNNAC	4 cut(s)	273, 372, 381, 448
HpyAV	CCTTC	3 cut(s)	313, 424, 433
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	148, 273, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 482
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	137, 338, 462, 489
HspAI	GCGC	2 cut(s)	13, 195
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	3 cut(s)	112, 134, 467
LpnPI	CCDG	8 cut(s)	40, 62, 68, 172, 261, 344, 389, 455
MaeI	CTAG	2 cut(s)	10, 481
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	1 cut(s)	540
MboI	GATC	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	131, 275
MluCI	AATT	3 cut(s)	207, 301, 325
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	7 cut(s)	44, 132, 209, 324, 436, 466, 497
MseI	TTAA	2 cut(s)	212, 549
MspA1I	CMGCKG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	112, 482
NcoI	CCATGG	1 cut(s)	133
NdeI	CATATG	2 cut(s)	118, 168
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	4 cut(s)	137, 338, 462, 489
NlaIV	GGNNCC	2 cut(s)	114, 130
NspI	RCATGY	2 cut(s)	338, 489
PaeI	GCATGC	1 cut(s)	338
PfeI	GAWTC	4 cut(s)	3, 30, 73, 163
Psp1406I	AACGTT	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	114, 130
PspPI	GGNCC	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	4 cut(s)	19, 178, 449, 508
RsaNI	GTAC	4 cut(s)	18, 177, 448, 507
SalI	GTCGAC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	212, 549
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	1 cut(s)	411
ScaI	AGTACT	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	131, 275
SetI	ASST	7 cut(s)	96, 108, 143, 288, 447, 508, 530
SfcI	CTRYAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	207, 301, 325
SspMI	CTAG	2 cut(s)	10, 481
StyI	CCWWGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	248, 371
TasI	AATT	3 cut(s)	207, 301, 325
TatI	WGTACW	2 cut(s)	17, 447
TfiI	GAWTC	4 cut(s)	3, 30, 73, 163
Tru1I	TTAA	2 cut(s)	212, 549
Tru9I	TTAA	2 cut(s)	212, 549
TscAI	CASTG	3 cut(s)	155, 280, 474
TspDTI	ATGAA	2 cut(s)	155, 406
TspRI	CASTG	3 cut(s)	155, 280, 474
VneI	GTGCAC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	2 cut(s)	338, 489
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	2 cut(s)	10, 481
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.