Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002795

Physical Location & Seq

Genomic Coordinates Forward (+)

37520454 .. 37524287

Gene Structure 3834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTTCAATTTTTGCATTCACATAATATTTGACAAACGCTTTAATCCTTATTGTCAGTGTGTTTCCAATGTGAAACTGAGTAAAGAAGAGTTTGTGTCCAAATTGCTTGATAGAAGATGGACATTGCCTAGCCCTGATGCTAAAATTCACCAAATAATGCTTTCAACCAGCAAAGTACAACCACAACCAGGCAGACCCTTGTCTGATATTTCCTTCTGGAACAATACTAACCCATGTTTTAGTCATTCTATGGCAGAAAAGGACGATTCTTTCTTGATTGTGAGGGATGATTTGTTGCATCCGTTGATAAATGGGAATAAAGCAAGAAAATTGGATGCATTGATTCCCCTTGTTGAAGATCATTCCGTGACTGATGTGGTGACATGTGGAGGTTGTCAAAGTGCCCATACAGCAGCTGTTGCCGTTTCATGTTCAGAAAGAGGATTAAAACCGCATTTACTTCTACGAGGGGAGCAGCCTGAAATACTGACTGGCTATAACTTGATGTCAACAATATATGGCAATGTCACATATGTTCCAAGATCGATTTATGCCAATAGGGAAAAGATGTTAAAGAGCCATGCTGATTATTTGGCAGGCAGTAGTTGTAACGTCCTTCGGTTTGATGATATTTTGGAGGCTTCTTTGAATCAAAGTGATGGTGCTCTGAATCTTTTGCAAAAGGATGCTAATAGAAGTGACCATCCTCGGAAAATTGTAATTGTCAATGAAGGCGCAGGAGATGTTGTAGCATTACTAGGTTTGATTCGCCTAGTGCAGTACTTATCCCAGAATCACTTACTTGGAAAAGAGAGGGTCTTGAAGTTTGTTGTAGATTCTGGAACTGGGACAACAGTTGTTGGTTTAGCTCTTGGAGCCATATGTTTGGGGCTCCCATGGGAGGTAACTGCAGTGATGTTGGCTGATTCATATGATGGGTACAGACATCAGGAGAAGCGCTTGATATCCAATTTTAAGAGGCATTTTGATACTCATATTGATCACTGCTTAGATGATATAGACAAAGGAATTGTGCACTGGGTAGAACGTTGCCACCCGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0046395 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

355

Amino Acids

39.81

Weight (kDa)

7.24

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26115 AT3G26115 AT3G26115 AT3G26115 AT3G26115
fragaria_vesca	FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240 FvH4_4g25240
malus_domestica	MD13G1105700.v1.1
prunus_persica	Prupe.1G240700_v2.0.a1 Prupe.1G240700_v2.0.a1
pyrus_communis	pycom13g09170
rosa_chinensis	RchiOBHm_Chr4g0432431
rosa_laevigata	RLG00000006843
rosa_multiflora	Rmu_co8266185.1_g000001 Rmu_sc0001084.1_g000019 Rmu_sc0016445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239550 Rroxscaffold_5G00373910
rosa_rugosa	Rorug04G0258700 Rorug04G0258800.1 Rorug04G0258900.1
rosa_samantha	Rh4AG314200 Rh4BG322000 Rh4CG337100 Rh4DG317700 Rh7BG357300
rosa_wichuraiana	Rw4G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	452
AclI	AACGTT	1 cut(s)	1048
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	3 cut(s)	177, 782, 941
AfeI	AGCGCT	1 cut(s)	959
AfiI	CCNNNNNNNGG	2 cut(s)	188, 901
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	7, 165, 356, 649, 823
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	416, 869
AluI	AGCT	2 cut(s)	416, 869
Alw21I	GWGCWC	2 cut(s)	667, 1038
Alw44I	GTGCAC	1 cut(s)	1034
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	1057
Aor51HI	AGCGCT	1 cut(s)	959
ApaLI	GTGCAC	1 cut(s)	1034
ApeKI	GCWGC	2 cut(s)	413, 475
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	737, 960
AsuHPI	GGTGA	2 cut(s)	140, 391
AvaI	CYCGRG	1 cut(s)	1057
BaeGI	GKGCMC	2 cut(s)	406, 1038
BanII	GRGCYC	1 cut(s)	894
Bbv12I	GWGCWC	2 cut(s)	667, 1038
BbvI	GCAGC	2 cut(s)	425, 487
BccI	CCATC	4 cut(s)	111, 653, 711, 929
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	1000
BfaI	CTAG	3 cut(s)	129, 758, 773
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	961
BisI	GCNGC	2 cut(s)	414, 476
BlsI	GCNGC	2 cut(s)	415, 477
BmcAI	AGTACT	1 cut(s)	782
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	1057
BmiI	GGNNCC	2 cut(s)	877, 893
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	2 cut(s)	855, 1048
BmsI	GCATC	4 cut(s)	127, 307, 325, 676
BmuI	ACTGGG	2 cut(s)	855, 1048
BoxI	GACNNNNGTC	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	707, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 901
Bse1I	ACTGG	3 cut(s)	496, 850, 1043
Bse3DI	GCAATG	2 cut(s)	122, 529
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	707, 896
BseGI	GGATG	5 cut(s)	292, 298, 340, 691, 703
BseLI	CCNNNNNNNGG	2 cut(s)	188, 901
BseMI	GCAATG	2 cut(s)	122, 529
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	496, 850, 1043
BseSI	GKGCMC	2 cut(s)	406, 1038
BseXI	GCAGC	2 cut(s)	425, 487
BsgI	GTGCAG	1 cut(s)	797
BshVI	ATCGAT	1 cut(s)	545
BsiHKAI	GWGCWC	2 cut(s)	667, 1038
BsiHKCI	CYCGRG	1 cut(s)	1057
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	2 cut(s)	188, 901
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	1057
Bsp1286I	GDGCHC	4 cut(s)	406, 667, 894, 1038
Bsp143I	GATC	3 cut(s)	358, 542, 1000
Bsp19I	CCATGG	1 cut(s)	896
BspACI	CCGC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	69
BspDI	ATCGAT	1 cut(s)	545
BspLI	GGNNCC	2 cut(s)	877, 893
BspMAI	CTGCAG	1 cut(s)	913
BsrDI	GCAATG	2 cut(s)	122, 529
BsrI	ACTGG	3 cut(s)	496, 850, 1043
BssECI	CCNNGG	2 cut(s)	707, 896
BssMI	GATC	3 cut(s)	358, 542, 1000
BssT1I	CCWWGG	1 cut(s)	896
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	856
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	77, 1009
BstDSI	CCRYGG	1 cut(s)	896
BstF5I	GGATG	5 cut(s)	292, 298, 340, 691, 703
BstH2I	RGCGCY	1 cut(s)	961
BstHHI	GCGC	2 cut(s)	737, 960
BstKTI	GATC	3 cut(s)	361, 545, 1003
BstMBI	GATC	3 cut(s)	358, 542, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 419, 875
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	387
BstPAI	GACNNNNGTC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	909
BstSLI	GKGCMC	2 cut(s)	406, 1038
BstV1I	GCAGC	2 cut(s)	425, 487
BstXI	CCANNNNNNTGG	1 cut(s)	886
Bsu15I	ATCGAT	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	896
BtsCI	GGATG	5 cut(s)	292, 298, 340, 691, 703
BtsI	GCAGTG	2 cut(s)	918, 1003
BtsIMutI	CAGTG	4 cut(s)	62, 918, 1003, 1036
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	2 cut(s)	737, 960
ClaI	ATCGAT	1 cut(s)	545
Csp6I	GTAC	3 cut(s)	176, 781, 940
CviAII	CATG	5 cut(s)	234, 384, 429, 581, 897
CviQI	GTAC	3 cut(s)	176, 781, 940
DdeI	CTNAG	2 cut(s)	77, 1009
DpnI	GATC	3 cut(s)	360, 544, 1002
DpnII	GATC	3 cut(s)	358, 542, 1000
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	896
Eco24I	GRGCYC	1 cut(s)	894
Eco32I	GATATC	1 cut(s)	966
Eco47III	AGCGCT	1 cut(s)	959
Eco88I	CYCGRG	1 cut(s)	1057
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	966
EcoT14I	CCWWGG	1 cut(s)	896
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	896
FaeI	CATG	5 cut(s)	237, 387, 432, 584, 900
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	5 cut(s)	233, 383, 428, 580, 896
FauNDI	CATATG	3 cut(s)	532, 881, 931
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	2 cut(s)	414, 476
FokI	GGATG	5 cut(s)	285, 299, 347, 690, 698
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	2 cut(s)	414, 476
FspBI	CTAG	3 cut(s)	129, 758, 773
GlaI	GCGC	2 cut(s)	736, 959
GluI	GCNGC	2 cut(s)	414, 476
HaeII	RGCGCY	1 cut(s)	961
HhaI	GCGC	2 cut(s)	737, 960
Hin1II	CATG	5 cut(s)	237, 387, 432, 584, 900
Hin6I	GCGC	2 cut(s)	735, 958
HinP1I	GCGC	2 cut(s)	735, 958
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	8 cut(s)	266, 343, 649, 670, 766, 793, 836, 926
HphI	GGTGA	2 cut(s)	140, 391
Hpy166II	GTNNAC	2 cut(s)	510, 1036
Hpy188I	TCNGA	4 cut(s)	205, 436, 669, 711
Hpy188III	TCNNGA	5 cut(s)	217, 274, 820, 840, 950
Hpy8I	GTNNAC	2 cut(s)	510, 1036
HpyAV	CCTTC	3 cut(s)	223, 626, 725
HpyCH4III	ACNGT	1 cut(s)	856
HpyCH4IV	ACGT	2 cut(s)	612, 1048
HpyCH4V	TGCA	7 cut(s)	15, 298, 338, 679, 778, 911, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 419, 875
HpyF3I	CTNAG	2 cut(s)	77, 1009
HpySE526I	ACGT	2 cut(s)	612, 1048
Hsp92II	CATG	5 cut(s)	237, 387, 432, 584, 900
HspAI	GCGC	2 cut(s)	735, 958
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	3 cut(s)	358, 542, 1000
LmnI	GCTCC	3 cut(s)	472, 875, 897
Lsp1109I	GCAGC	2 cut(s)	425, 487
LweI	GCATC	4 cut(s)	127, 307, 325, 676
MaeI	CTAG	3 cut(s)	129, 758, 773
MaeII	ACGT	2 cut(s)	612, 1048
MaeIII	GTNAC	6 cut(s)	367, 379, 526, 608, 698, 904
MalI	GATC	3 cut(s)	360, 544, 1002
MboI	GATC	3 cut(s)	358, 542, 1000
MboII	GAAGA	3 cut(s)	98, 126, 368
MhlI	GDGCHC	4 cut(s)	406, 667, 894, 1038
MluCI	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 970, 1029
MnlI	CCTC	9 cut(s)	276, 383, 434, 461, 631, 717, 807, 895, 972
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	4 cut(s)	42, 446, 572, 975
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	410, 419, 875
NcoI	CCATGG	1 cut(s)	896
NdeI	CATATG	3 cut(s)	532, 881, 931
NdeII	GATC	3 cut(s)	358, 542, 1000
NlaIII	CATG	5 cut(s)	237, 387, 432, 584, 900
NlaIV	GGNNCC	2 cut(s)	877, 893
NmuCI	GTSAC	4 cut(s)	367, 379, 526, 698
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	387
PciI	ACATGT	1 cut(s)	383
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	8 cut(s)	266, 343, 649, 670, 766, 793, 836, 926
PkrI	GCNGC	2 cut(s)	415, 477
PscI	ACATGT	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	1048
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	877, 893
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	3 cut(s)	177, 782, 941
RsaNI	GTAC	3 cut(s)	176, 781, 940
SaqAI	TTAA	4 cut(s)	42, 446, 572, 975
SatI	GCNGC	2 cut(s)	414, 476
Sau3AI	GATC	3 cut(s)	358, 542, 1000
ScaI	AGTACT	1 cut(s)	782
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	4 cut(s)	406, 667, 894, 1038
SetI	ASST	7 cut(s)	394, 418, 615, 763, 871, 906, 1051
SfaNI	GCATC	4 cut(s)	127, 307, 325, 676
SfcI	CTRYAG	1 cut(s)	909
Sse9I	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 970, 1029
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	3 cut(s)	129, 758, 773
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	896
TaaI	ACNGT	1 cut(s)	856
TaiI	ACGT	2 cut(s)	615, 1051
TaqI	TCGA	1 cut(s)	545
TasI	AATT	8 cut(s)	7, 101, 144, 329, 714, 720, 970, 1029
TatI	WGTACW	2 cut(s)	175, 780
TfiI	GAWTC	8 cut(s)	266, 343, 649, 670, 766, 793, 836, 926
Tru1I	TTAA	4 cut(s)	42, 446, 572, 975
Tru9I	TTAA	4 cut(s)	42, 446, 572, 975
TscAI	CASTG	4 cut(s)	62, 918, 1010, 1043
TseFI	GTSAC	4 cut(s)	367, 379, 526, 698
TseI	GCWGC	2 cut(s)	413, 475
Tsp45I	GTSAC	4 cut(s)	367, 379, 526, 698
TspDTI	ATGAA	3 cut(s)	417, 744, 918
TspGWI	ACGGA	2 cut(s)	291, 355
TspRI	CASTG	4 cut(s)	62, 918, 1010, 1043
VneI	GTGCAC	1 cut(s)	1034
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	3 cut(s)	129, 758, 773
ZrmI	AGTACT	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.