FvH4_4g25710

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001774
Physical Location & Seq
Reverse (-)
27404429 .. 27410371
5943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25710.t3

Sequence Viewer

Length: 1266 bp
ATGAGATCAGCTATCGCTTTCTACTTGCAGTTCCTTTTTCCATGCATTTGTAGTCAGAAGCTTGTAAATAAGATGGGAATCCTTTCACGCAGTGCGGTTAGTAGAAAACCGAATGAGACTATGAGGCTTATTGTGACAACTTTTGTAGGAGTAGTTTTTGGATTCTTGATAGGTGTATCCTTTCCAACATTGTCATTAACAAAGCTGAATCTCTCATCCAGCCTTCTTCCATCAGTTGATCTATCATACAATGACAATGGGAAATCAAGTGTCTCAGATTTTTATTCTTATGTGAAGAAAAATAGTAGCTCTTCTCAATCTCAGAGAGTAAATGATACATCTAAGATTTGGGTGCCCACAAATCCTAGAGGTGCAGAAATGCTACCCCCAGGAATTGTTGAAGCTGAGTCGGATTTCTACTTGCGCAGATTATGGGGCAAGCCTAGTGAGGACTTAACAACCAAACCTAGGTACCTTGTGACATTCACTGTGGGTATCAATCAGAAAAAGAATATTGATGCAGCTGTGAAAAAGTTTTCAGAGGACTTCACGATTCTTCTTTTCCATTACGATGGGATAACAACTGAATGGGATGACCTGGAGTGGTCTAAGCGGGCTATACATGTTAGTGTTCGCAAGCAAACTAAATGGTGGTATGCCAAGCGATTTTTGCATCCTGACATTGTGGCCCCTTACGATTACATATTTATCTGGGATGAAGACCTCGGAGTTGAGCATTTTAATGCTGAAGAATACATAAAGCTAGTCAGGAAGCATGGTTTGGAAATTTCACAGCCTGGTTTAGAACCTAACAAAGGATTGACATGGCAGATGACAAAGAGAAGAGGTGACCGTGAAGTTCACAAACAAACACAGGAGAAACCAGGCTGGTGCACTGACCCACATCTGCCACCATGTGCAGCGTTTGTTGAGATCATGGCTCCTGTATTTTCCCGAAGCGCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCCATGGGTGGGGTCTCGACTTTGCCCTTAGAAAATGTGTAGAGCCTGCCCATGAGAAGATAGGAGTTGTAGATTCTCAGTGGATTGTTCATCAAACTGTTCCATCACTTGGTAATCAGGGTGAATCACAAAACGGAAAGGCACCATGGCAAGGGGTGAGGGAAAGGTGCAGAAAGGAATGGACAATGTTTCAGATGAGGGTCGCAAATGCAGAAAGTGCGTATTTTAACGCAATGGAGACGTATAACTCGACAAACTCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

422

Amino Acids

48.37

Weight (kDa)

8.89

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 39 - 294 3.9e-130 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 3 cut(s) 352, 471, 1141
AccB7I CCANNNNNTGG 1 cut(s) 1109
AciI CCGC 2 cut(s) 95, 613
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 768
AdeI CACNNNGTG 2 cut(s) 92, 917
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 5 cut(s) 388, 597, 796, 883, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 7 cut(s) 11, 61, 205, 309, 404, 524, 763
AluI AGCT 7 cut(s) 11, 61, 205, 309, 404, 524, 763
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 4 cut(s) 110, 277, 1019, 1232
Alw44I GTGCAC 1 cut(s) 892
AoxI GGCC 1 cut(s) 687
ApaLI GTGCAC 1 cut(s) 892
ApeKI GCWGC 2 cut(s) 521, 920
ApoI RAATTY 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 3 cut(s) 426, 962, 969
AspS9I GGNCC 2 cut(s) 688, 1000
AsuHPI GGTGA 3 cut(s) 860, 1133, 1168
AvaII GGWCC 1 cut(s) 1000
AvrII CCTAGG 1 cut(s) 467
BaeGI GKGCMC 2 cut(s) 357, 896
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BanI GGYRCC 3 cut(s) 352, 471, 1141
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 896
BbvI GCAGC 2 cut(s) 533, 932
BccI CCATC 4 cut(s) 67, 238, 566, 1111
BciT130I CCWGG 5 cut(s) 390, 599, 798, 885, 964
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 4 cut(s) 110, 277, 1019, 1232
BfaI CTAG 5 cut(s) 366, 444, 468, 764, 1264
BfoI RGCGCY 2 cut(s) 963, 970
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 2 cut(s) 522, 921
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 2 cut(s) 523, 922
Bme1390I CCNGG 5 cut(s) 390, 599, 798, 885, 964
Bme18I GGWCC 1 cut(s) 1000
BmgT120I GGNCC 2 cut(s) 688, 1000
BmiI GGNNCC 5 cut(s) 354, 473, 690, 942, 1143
BmrFI CCNGG 5 cut(s) 390, 599, 798, 885, 964
BmsI GCATC 2 cut(s) 508, 682
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
Bsc4I CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
Bse3DI GCAATG 1 cut(s) 1239
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 5 cut(s) 390, 599, 798, 885, 964
BseDI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
BseGI GGATG 4 cut(s) 215, 598, 673, 721
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 4 cut(s) 288, 335, 396, 1091
BseSI GKGCMC 2 cut(s) 357, 896
BseXI GCAGC 2 cut(s) 533, 932
BsgI GTGCAG 3 cut(s) 393, 939, 1189
BshFI GGCC 1 cut(s) 689
BshNI GGYRCC 3 cut(s) 352, 471, 1141
BsiHKAI GWGCWC 1 cut(s) 896
BslI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
BsmAI GTCTC 4 cut(s) 110, 277, 1019, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 1019
Bsp1286I GDGCHC 2 cut(s) 357, 896
Bsp143I GATC 3 cut(s) 5, 238, 933
Bsp19I CCATGG 2 cut(s) 1003, 1145
BspACI CCGC 2 cut(s) 95, 613
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 4 cut(s) 287, 334, 397, 1090
BspLI GGNNCC 5 cut(s) 354, 473, 690, 942, 1143
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 3 cut(s) 352, 471, 1141
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 1239
BssECI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
BssMI GATC 3 cut(s) 5, 238, 933
BssT1I CCWWGG 3 cut(s) 467, 1003, 1145
Bst2UI CCWGG 5 cut(s) 390, 599, 798, 885, 964
Bst4CI ACNGT 3 cut(s) 490, 854, 1099
Bst6I CTCTTC 2 cut(s) 316, 838
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstC8I GCNNGC 4 cut(s) 440, 615, 638, 1047
BstDEI CTNAG 7 cut(s) 274, 321, 342, 405, 609, 1028, 1077
BstDSI CCRYGG 2 cut(s) 1003, 1145
BstEII GGTNACC 1 cut(s) 848
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 4 cut(s) 215, 598, 673, 721
BstH2I RGCGCY 2 cut(s) 963, 970
BstHHI GCGC 3 cut(s) 426, 962, 969
BstKTI GATC 3 cut(s) 8, 241, 936
BstMAI GTCTC 4 cut(s) 110, 277, 1019, 1232
BstMBI GATC 3 cut(s) 5, 238, 933
BstMWI GCNNNNNNNGC 3 cut(s) 670, 966, 1217
BstNI CCWGG 5 cut(s) 390, 599, 798, 885, 964
BstNSI RCATGY 1 cut(s) 626
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 5 cut(s) 388, 597, 796, 883, 962
BstSLI GKGCMC 2 cut(s) 357, 896
BstV1I GCAGC 2 cut(s) 533, 932
BstV2I GAAGAC 1 cut(s) 726
BstXI CCANNNNNNTGG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 689
BtgI CCRYGG 2 cut(s) 1003, 1145
BtsCI GGATG 4 cut(s) 215, 598, 673, 721
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 4 cut(s) 97, 486, 894, 1085
Cac8I GCNNGC 4 cut(s) 440, 615, 638, 1047
CfoI GCGC 3 cut(s) 426, 962, 969
Cfr13I GGNCC 2 cut(s) 688, 1000
Csp6I GTAC 1 cut(s) 472
CviAII CATG 9 cut(s) 42, 623, 776, 825, 915, 937, 1004, 1052, 1146
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 7 cut(s) 274, 321, 342, 405, 609, 1028, 1077
DpnI GATC 3 cut(s) 7, 240, 935
DpnII GATC 3 cut(s) 5, 238, 933
DraIII CACNNNGTG 2 cut(s) 92, 917
Eam1104I CTCTTC 2 cut(s) 316, 838
EarI CTCTTC 2 cut(s) 316, 838
Eco130I CCWWGG 3 cut(s) 467, 1003, 1145
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 768
Eco91I GGTNACC 1 cut(s) 848
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 5 cut(s) 388, 597, 796, 883, 962
EcoT14I CCWWGG 3 cut(s) 467, 1003, 1145
EcoT22I ATGCAT 1 cut(s) 47
ErhI CCWWGG 3 cut(s) 467, 1003, 1145
Esp3I CGTCTC 1 cut(s) 1232
FaeI CATG 9 cut(s) 45, 626, 779, 828, 918, 940, 1007, 1055, 1149
FatI CATG 9 cut(s) 41, 622, 775, 824, 914, 936, 1003, 1051, 1145
FauI CCCGC 1 cut(s) 606
FauNDI CATATG 1 cut(s) 981
Fnu4HI GCNGC 2 cut(s) 522, 921
FokI GGATG 4 cut(s) 202, 605, 660, 728
Fsp4HI GCNGC 2 cut(s) 522, 921
FspBI CTAG 5 cut(s) 366, 444, 468, 764, 1264
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 3 cut(s) 425, 961, 968
GluI GCNGC 2 cut(s) 522, 921
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 2 cut(s) 963, 970
HaeIII GGCC 1 cut(s) 689
HhaI GCGC 3 cut(s) 426, 962, 969
Hin1II CATG 9 cut(s) 45, 626, 779, 828, 918, 940, 1007, 1055, 1149
Hin6I GCGC 3 cut(s) 424, 960, 967
HinP1I GCGC 3 cut(s) 424, 960, 967
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 8 cut(s) 78, 162, 208, 407, 553, 985, 1073, 1124
HphI GGTGA 3 cut(s) 860, 1133, 1168
Hpy166II GTNNAC 2 cut(s) 862, 894
Hpy188I TCNGA 9 cut(s) 57, 277, 324, 412, 504, 541, 728, 990, 1194
Hpy188III TCNNGA 6 cut(s) 166, 550, 677, 769, 954, 1016
Hpy8I GTNNAC 2 cut(s) 862, 894
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 3 cut(s) 490, 854, 1099
HpyCH4IV ACGT 1 cut(s) 1241
HpyCH4V TGCA 9 cut(s) 28, 45, 374, 521, 673, 894, 920, 1170, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 670, 966, 1217
HpyF3I CTNAG 7 cut(s) 274, 321, 342, 405, 609, 1028, 1077
HpySE526I ACGT 1 cut(s) 1241
Hsp92II CATG 9 cut(s) 45, 626, 779, 828, 918, 940, 1007, 1055, 1149
HspAI GCGC 3 cut(s) 424, 960, 967
KpnI GGTACC 1 cut(s) 475
Kzo9I GATC 3 cut(s) 5, 238, 933
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 2 cut(s) 533, 932
LweI GCATC 2 cut(s) 508, 682
MaeI CTAG 5 cut(s) 366, 444, 468, 764, 1264
MaeII ACGT 1 cut(s) 1241
MaeIII GTNAC 3 cut(s) 133, 478, 848
MalI GATC 3 cut(s) 7, 240, 935
MboI GATC 3 cut(s) 5, 238, 933
MboII GAAGA 8 cut(s) 218, 303, 307, 548, 731, 761, 855, 1069
MhlI GDGCHC 2 cut(s) 357, 896
MluCI AATT 2 cut(s) 393, 786
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 209, 390
MnlI CCTC 8 cut(s) 117, 362, 442, 535, 734, 839, 1152, 1191
Mph1103I ATGCAT 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 4 cut(s) 197, 455, 741, 1227
MslI CAYNNNNRTG 3 cut(s) 570, 627, 741
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 5 cut(s) 390, 599, 798, 885, 964
MvaI CCWGG 5 cut(s) 390, 599, 798, 885, 964
MwoI GCNNNNNNNGC 3 cut(s) 670, 966, 1217
NcoI CCATGG 2 cut(s) 1003, 1145
NdeI CATATG 1 cut(s) 981
NdeII GATC 3 cut(s) 5, 238, 933
NlaIII CATG 9 cut(s) 45, 626, 779, 828, 918, 940, 1007, 1055, 1149
NlaIV GGNNCC 5 cut(s) 354, 473, 690, 942, 1143
NmuCI GTSAC 3 cut(s) 133, 478, 848
NsbI TGCGCA 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 1 cut(s) 626
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 1247
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 7 cut(s) 78, 162, 208, 553, 985, 1073, 1124
PflFI GACNNNGTC 1 cut(s) 998
PflMI CCANNNNNTGG 1 cut(s) 1109
PkrI GCNGC 2 cut(s) 523, 922
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 5 cut(s) 388, 597, 796, 883, 962
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 5 cut(s) 388, 597, 796, 883, 962
PspN4I GGNNCC 5 cut(s) 354, 473, 690, 942, 1143
PspPI GGNCC 2 cut(s) 688, 1000
PsyI GACNNNGTC 1 cut(s) 998
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 3 cut(s) 570, 627, 741
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 4 cut(s) 197, 455, 741, 1227
SatI GCNGC 2 cut(s) 522, 921
Sau3AI GATC 3 cut(s) 5, 238, 933
Sau96I GGNCC 2 cut(s) 688, 1000
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 5 cut(s) 390, 599, 798, 885, 964
SduI GDGCHC 2 cut(s) 357, 896
SfaNI GCATC 2 cut(s) 508, 682
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 3 cut(s) 570, 627, 741
Sse9I AATT 2 cut(s) 393, 786
SsiI CCGC 2 cut(s) 95, 613
SspI AATATT 1 cut(s) 514
SspMI CTAG 5 cut(s) 366, 444, 468, 764, 1264
StyD4I CCNGG 5 cut(s) 388, 597, 796, 883, 962
StyI CCWWGG 3 cut(s) 467, 1003, 1145
TaaI ACNGT 3 cut(s) 490, 854, 1099
TaiI ACGT 1 cut(s) 1244
TaqI TCGA 2 cut(s) 1017, 1250
TasI AATT 2 cut(s) 393, 786
TfiI GAWTC 7 cut(s) 78, 162, 208, 553, 985, 1073, 1124
Tru1I TTAA 4 cut(s) 197, 455, 741, 1227
Tru9I TTAA 4 cut(s) 197, 455, 741, 1227
TscAI CASTG 4 cut(s) 97, 493, 901, 1085
TseFI GTSAC 3 cut(s) 133, 478, 848
TseI GCWGC 2 cut(s) 521, 920
Tsp45I GTSAC 3 cut(s) 133, 478, 848
TspDTI ATGAA 2 cut(s) 732, 1079
TspGWI ACGGA 1 cut(s) 1149
TspRI CASTG 4 cut(s) 97, 493, 901, 1085
Tth111I GACNNNGTC 1 cut(s) 998
Van91I CCANNNNNTGG 1 cut(s) 1109
VneI GTGCAC 1 cut(s) 892
VpaK11BI GGWCC 1 cut(s) 1000
XagI CCTNNNNNAGG 1 cut(s) 813
XapI RAATTY 1 cut(s) 786
XceI RCATGY 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 5 cut(s) 366, 444, 468, 764, 1264
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.