Rorug04G0265800

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001774
Physical Location & Seq
Forward (+)
43790712 .. 43793312
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0265800.1

Sequence Viewer

Length: 657 bp
ATGGCAAGCAGGCTTTTACAAGTAGGCACTAAGATCATCGGAGTCGGCAGAAACTACGCCGCCCACGCCAAAGAGCTCGGCAACGCCGTCCCCAAGGAGCCTGTGCTGTTTCTCAAACCGACGTCGTCTTACTTGGAAAACGGAGGCACGATCGAAATCCCTCACCCTCTGCAGTCGTTGGACTATGAGGTGGAGCTGGCCGTCATCATATCCAAGAAAGCTCGCGATGTTCCCCAGGCCAAGGCCATGGATTACGTTGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAGATTCAAGCTACTGCTAAGTCTGCAGGTCTTCCATGGACCATAGCAAAAGGGCAGGACACCTTCACACCAATCAGTTCTGTGTTGTCCCTAGCAACGGTGCCAGACCCTGACGATTTGGAACTTTGGTTGAAGGTAGATGGAGAAGTGAGGCAAAAAGGCTCAACCAAGGATATGATATTTAAAATCCCATTTCTCATCAGCCACATAAGTTCCATTATGACACTTCTGGAAGGAGATGTAATACTAACAGGTACTCCCAAGGGTGTTGGTCCAGTAAAAGCAGGCCAAAAGATAACTGCGGGAATAACAAACCTTGTGGATGTACAATTCAATGTTGACAAACGGAGGCAAGGAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

218

Amino Acids

23.45

Weight (kDa)

7.87

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase PF01557 11 - 210 9.3e-62 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 391
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 60, 593
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 547, 618
AfiI CCNNNNNNNGG 2 cut(s) 241, 388
AgsI TTSAA 3 cut(s) 299, 424, 625
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 4 cut(s) 76, 196, 221, 302
AluI AGCT 4 cut(s) 76, 196, 221, 302
Alw21I GWGCWC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 4 cut(s) 198, 237, 243, 577
AspS9I GGNCC 2 cut(s) 330, 563
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 330, 563
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 1 cut(s) 425
BceAI ACGGC 2 cut(s) 71, 185
BciT130I CCWGG 1 cut(s) 236
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 2 cut(s) 170, 315
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 330, 563
BmgT120I GGNCC 2 cut(s) 330, 563
BmiI GGNNCC 2 cut(s) 99, 393
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 7 cut(s) 93, 234, 240, 246, 326, 459, 552
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 388
Bse1I ACTGG 1 cut(s) 566
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 7 cut(s) 93, 234, 240, 246, 326, 459, 552
BseGI GGATG 1 cut(s) 619
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 241, 388
BseNI ACTGG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 200, 239, 245, 579
BshNI GGYRCC 1 cut(s) 391
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 78
BslFI GGGAC 2 cut(s) 74, 364
BslI CCNNNNNNNGG 2 cut(s) 241, 388
BsmFI GGGAC 2 cut(s) 74, 364
BsnI GGCC 4 cut(s) 200, 239, 245, 579
Bsp1286I GDGCHC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 2 cut(s) 33, 150
Bsp19I CCATGG 2 cut(s) 246, 326
Bsp68I TCGCGA 1 cut(s) 225
BspACI CCGC 2 cut(s) 60, 593
BspANI GGCC 4 cut(s) 200, 239, 245, 579
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 99, 393
BspMAI CTGCAG 2 cut(s) 174, 319
BspMI ACCTGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 391
BsrGI TGTACA 1 cut(s) 616
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 7 cut(s) 93, 234, 240, 246, 326, 459, 552
BssMI GATC 2 cut(s) 33, 150
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 6 cut(s) 93, 240, 246, 326, 459, 552
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 616
BstC8I GCNNGC 5 cut(s) 7, 11, 198, 223, 577
BstDEI CTNAG 2 cut(s) 30, 309
BstDSI CCRYGG 2 cut(s) 246, 326
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 2 cut(s) 36, 153
BstMBI GATC 2 cut(s) 33, 150
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 65, 314
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 170, 315
BstUI CGCG 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 4 cut(s) 200, 239, 245, 579
BtgI CCRYGG 2 cut(s) 246, 326
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 619
BtuMI TCGCGA 1 cut(s) 225
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 5 cut(s) 7, 11, 198, 223, 577
CaiI CAGNNNCTG 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 330, 563
Csp6I GTAC 2 cut(s) 546, 617
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 2 cut(s) 247, 327
CviQI GTAC 2 cut(s) 546, 617
DdeI CTNAG 2 cut(s) 30, 309
DpnI GATC 2 cut(s) 35, 152
DpnII GATC 2 cut(s) 33, 150
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 6 cut(s) 93, 240, 246, 326, 459, 552
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 330, 563
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 6 cut(s) 93, 240, 246, 326, 459, 552
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 6 cut(s) 93, 240, 246, 326, 459, 552
FaeI CATG 2 cut(s) 250, 330
FaqI GGGAC 2 cut(s) 74, 364
FatI CATG 2 cut(s) 246, 326
FauI CCCGC 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 383
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 4 cut(s) 200, 239, 245, 579
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 2 cut(s) 250, 330
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 2 cut(s) 42, 295
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 4 cut(s) 224, 275, 521, 654
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 2 cut(s) 124, 127
HpyAV CCTTC 3 cut(s) 364, 418, 518
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 122, 255
HpyCH4V TGCA 3 cut(s) 172, 266, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 314
HpyF3I CTNAG 2 cut(s) 30, 309
HpySE526I ACGT 2 cut(s) 122, 255
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 2 cut(s) 250, 330
Kzo9I GATC 2 cut(s) 33, 150
LmnI GCTCC 2 cut(s) 97, 193
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 122, 255
MalI GATC 2 cut(s) 35, 152
MboI GATC 2 cut(s) 33, 150
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 620
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 137, 171, 177, 181, 435, 633
MseI TTAA 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 65, 314
NcoI CCATGG 2 cut(s) 246, 326
NdeII GATC 2 cut(s) 33, 150
NlaIII CATG 2 cut(s) 250, 330
NlaIV GGNNCC 2 cut(s) 99, 393
NmeAIII GCCGAG 1 cut(s) 57
NruI TCGCGA 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 99, 393
PspPI GGNCC 2 cut(s) 330, 563
PstI CTGCAG 2 cut(s) 174, 319
PstNI CAGNNNCTG 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 124
PvuI CGATCG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 225
RsaI GTAC 2 cut(s) 547, 618
RsaNI GTAC 2 cut(s) 546, 617
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 33, 150
Sau96I GGNCC 2 cut(s) 330, 563
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 170, 315
SinI GGWCC 2 cut(s) 330, 563
Sse9I AATT 1 cut(s) 620
SsiI CCGC 2 cut(s) 60, 593
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 6 cut(s) 93, 240, 246, 326, 459, 552
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 125, 258
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 620
TatI WGTACW 1 cut(s) 616
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TspGWI ACGGA 2 cut(s) 156, 652
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 330, 563
XspI CTAG 1 cut(s) 383
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.