Rh4AG319800

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001774
Physical Location & Seq
Reverse (-)
63182626 .. 63190207
7582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG319800.1

Sequence Viewer

Length: 1056 bp
ATGGGAATCCTTTCACGCAGTGCGGTTGCTAGAAAACCAAATGAGACAATGAGGCTTATTGTGACAACTTTTGTAGGAGTAGTTTTTGGATTCTTGATAGGTGTATCCTTTCCAACATTGTCATTAACGAAGCTGAATCTCTCATCCAGCCTTCTTCCATCAGTTGATCTATCATACAATGAGAAGGGGAAATCAAGCATCTCAGATTTTTATTCTTATGTGAAGAAAAATAGTAGCTCAACTCAATCTCAGAGACGAAATGATACATCGAAGATTTGGGTGCCCACAAATCCTAGAGGTGCAGAAATGCTACCCCCAGGAATTGTTGAAGCTGAGTCAGACTACTACTTGCGCAGATTATGGGGCAAGCCTAGTGAGGACTTAACAACCAAACCTAGGTACCTTGTGACATTCACTGTGGGTATCAAACAGAAAAATAATATTGATGCAGCTGTGAAAAAGTTTTCGGAGGACTTTACGATTCTTCTTTTCCATTACGATGGGATAACAACCGAATGGGATGACCTTGAGTGGTCTAAGCGGGCTATACATGTTAGTGTTCGCAAGCAAACTAAATGGTGGTATGCCAAGCGATTTTTGCATCCTGACATTGTTGCCCCATACGATTACATATTTATCTGGGATGAAGACCTCGGAGTAGAGCATTTTAATGCTGAGGAGTACATAAAGCTAGTCAGGAAGCATGGTTTGGAGATTTCGCAGCCTGGTTTAGAACCTAACAAAGGATTGACATGGCAGATGACAAAGAGAAGAGGTGACCGTGAAGTTCACAAACAAACAGAGGAGAAACCAGGCTGGTGCACTGACCCACATCTGCCTCCATGTGCAGCGTTCGTTGAGATCATGGCTCCCGTATTTTCCCGAAGTGCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCCACGGGTGGGGTCTTGACTTTGCCCTTAGAAAATGTGTAGAGGTGAGTGACCCACCTCCAATCTGTTTCTATGATGTTTCTTCAACCATTAGTTTGTCCTTGTTGGGATTTCATCTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

351

Amino Acids

40.28

Weight (kDa)

8.64

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 96 - 324 9.4e-123 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 2 cut(s) 280, 399
AciI CCGC 2 cut(s) 23, 541
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 401, 683
AfiI CCNNNNNNNGG 3 cut(s) 396, 743, 937
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 329, 1014
AjnI CCWGG 4 cut(s) 316, 724, 811, 890
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 133, 237, 332, 452, 691
AluI AGCT 5 cut(s) 133, 237, 332, 452, 691
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 2 cut(s) 38, 247
Alw44I GTGCAC 1 cut(s) 820
ApaLI GTGCAC 1 cut(s) 820
ApeKI GCWGC 3 cut(s) 449, 721, 848
Asp700I GAANNNNTTC 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 399
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 2 cut(s) 354, 897
AspS9I GGNCC 1 cut(s) 928
AsuHPI GGTGA 2 cut(s) 788, 985
AvaII GGWCC 1 cut(s) 928
AvrII CCTAGG 1 cut(s) 395
BaeGI GKGCMC 2 cut(s) 285, 824
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BanI GGYRCC 2 cut(s) 280, 399
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 824
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 461, 733, 860
BccI CCATC 2 cut(s) 166, 494
BciT130I CCWGG 4 cut(s) 318, 726, 813, 892
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 38, 247
BfaI CTAG 5 cut(s) 30, 294, 372, 396, 692
BfoI RGCGCY 1 cut(s) 898
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 3 cut(s) 450, 722, 849
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 451, 723, 850
Bme1390I CCNGG 4 cut(s) 318, 726, 813, 892
Bme18I GGWCC 1 cut(s) 928
BmgT120I GGNCC 1 cut(s) 928
BmiI GGNNCC 3 cut(s) 282, 401, 870
BmrFI CCNGG 4 cut(s) 318, 726, 813, 892
BmsI GCATC 3 cut(s) 207, 436, 610
BpiI GAAGAC 1 cut(s) 654
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 4 cut(s) 316, 395, 652, 931
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 743, 937
BseBI CCWGG 4 cut(s) 318, 726, 813, 892
BseDI CCNNGG 4 cut(s) 316, 395, 652, 931
BseGI GGATG 4 cut(s) 143, 526, 601, 649
BseLI CCNNNNNNNGG 3 cut(s) 396, 743, 937
BseMII CTCAG 4 cut(s) 216, 263, 324, 666
BseRI GAGGAG 2 cut(s) 692, 818
BseSI GKGCMC 2 cut(s) 285, 824
BseXI GCAGC 3 cut(s) 461, 733, 860
BsgI GTGCAG 2 cut(s) 321, 867
BshNI GGYRCC 2 cut(s) 280, 399
BsiHKAI GWGCWC 1 cut(s) 824
BslI CCNNNNNNNGG 3 cut(s) 396, 743, 937
BsmAI GTCTC 2 cut(s) 38, 247
BsmBI CGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 285, 824
Bsp143I GATC 2 cut(s) 166, 861
BspACI CCGC 2 cut(s) 23, 541
BspCNI CTCAG 4 cut(s) 215, 262, 325, 667
BspLI GGNNCC 3 cut(s) 282, 401, 870
BspT107I GGYRCC 2 cut(s) 280, 399
BssECI CCNNGG 4 cut(s) 316, 395, 652, 931
BssMI GATC 2 cut(s) 166, 861
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 4 cut(s) 318, 726, 813, 892
Bst4CI ACNGT 2 cut(s) 418, 782
Bst6I CTCTTC 1 cut(s) 766
BstC8I GCNNGC 3 cut(s) 368, 543, 566
BstDEI CTNAG 6 cut(s) 202, 249, 333, 537, 675, 956
BstDSI CCRYGG 1 cut(s) 931
BstEII GGTNACC 1 cut(s) 776
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 4 cut(s) 143, 526, 601, 649
BstH2I RGCGCY 1 cut(s) 898
BstHHI GCGC 2 cut(s) 354, 897
BstKTI GATC 2 cut(s) 169, 864
BstMAI GTCTC 2 cut(s) 38, 247
BstMBI GATC 2 cut(s) 166, 861
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 4 cut(s) 318, 726, 813, 892
BstNSI RCATGY 1 cut(s) 554
BstPI GGTNACC 1 cut(s) 776
BstSCI CCNGG 4 cut(s) 316, 724, 811, 890
BstSLI GKGCMC 2 cut(s) 285, 824
BstV1I GCAGC 3 cut(s) 461, 733, 860
BstV2I GAAGAC 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 500
BsuI GTATCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 931
BtsCI GGATG 4 cut(s) 143, 526, 601, 649
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 414, 822
Cac8I GCNNGC 3 cut(s) 368, 543, 566
CfoI GCGC 2 cut(s) 354, 897
Cfr13I GGNCC 1 cut(s) 928
Csp6I GTAC 2 cut(s) 400, 682
CviAII CATG 5 cut(s) 551, 704, 753, 843, 865
CviQI GTAC 2 cut(s) 400, 682
DdeI CTNAG 6 cut(s) 202, 249, 333, 537, 675, 956
DpnI GATC 2 cut(s) 168, 863
DpnII GATC 2 cut(s) 166, 861
DraIII CACNNNGTG 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 766
EarI CTCTTC 1 cut(s) 766
Eco130I CCWWGG 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 928
Eco91I GGTNACC 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoO65I GGTNACC 1 cut(s) 776
EcoRII CCWGG 4 cut(s) 316, 724, 811, 890
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 5 cut(s) 554, 707, 756, 846, 868
FatI CATG 5 cut(s) 550, 703, 752, 842, 864
FauI CCCGC 1 cut(s) 534
FauNDI CATATG 1 cut(s) 909
Fnu4HI GCNGC 3 cut(s) 450, 722, 849
FokI GGATG 4 cut(s) 130, 533, 588, 656
Fsp4HI GCNGC 3 cut(s) 450, 722, 849
FspBI CTAG 5 cut(s) 30, 294, 372, 396, 692
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 2 cut(s) 353, 896
GluI GCNGC 3 cut(s) 450, 722, 849
HaeII RGCGCY 1 cut(s) 898
HhaI GCGC 2 cut(s) 354, 897
Hin1II CATG 5 cut(s) 554, 707, 756, 846, 868
Hin6I GCGC 2 cut(s) 352, 895
HinP1I GCGC 2 cut(s) 352, 895
HinfI GANTC 6 cut(s) 6, 90, 136, 335, 481, 913
HphI GGTGA 2 cut(s) 788, 985
Hpy166II GTNNAC 3 cut(s) 790, 822, 931
Hpy188I TCNGA 7 cut(s) 205, 252, 340, 469, 656, 918, 1047
Hpy188III TCNNGA 5 cut(s) 94, 605, 697, 882, 944
Hpy8I GTNNAC 3 cut(s) 790, 822, 931
HpyAV CCTTC 2 cut(s) 161, 178
HpyCH4III ACNGT 2 cut(s) 418, 782
HpyCH4V TGCA 5 cut(s) 302, 449, 601, 822, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 6 cut(s) 202, 249, 333, 537, 675, 956
Hsp92II CATG 5 cut(s) 554, 707, 756, 846, 868
HspAI GCGC 2 cut(s) 352, 895
KpnI GGTACC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 166, 861
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 3 cut(s) 461, 733, 860
LweI GCATC 3 cut(s) 207, 436, 610
MaeI CTAG 5 cut(s) 30, 294, 372, 396, 692
MaeIII GTNAC 4 cut(s) 61, 406, 776, 977
MalI GATC 2 cut(s) 168, 863
MboI GATC 2 cut(s) 166, 861
MboII GAAGA 7 cut(s) 146, 235, 283, 476, 659, 783, 1002
MhlI GDGCHC 2 cut(s) 285, 824
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 3 cut(s) 125, 383, 669
MslI CAYNNNNRTG 3 cut(s) 498, 555, 669
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 4 cut(s) 318, 726, 813, 892
MvaI CCWGG 4 cut(s) 318, 726, 813, 892
MwoI GCNNNNNNNGC 1 cut(s) 598
NdeI CATATG 1 cut(s) 909
NdeII GATC 2 cut(s) 166, 861
NlaIII CATG 5 cut(s) 554, 707, 756, 846, 868
NlaIV GGNNCC 3 cut(s) 282, 401, 870
NmuCI GTSAC 4 cut(s) 61, 406, 776, 977
NsbI TGCGCA 1 cut(s) 353
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 5 cut(s) 6, 90, 136, 481, 913
PflFI GACNNNGTC 1 cut(s) 926
PkrI GCNGC 3 cut(s) 451, 723, 850
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PscI ACATGT 1 cut(s) 550
Psp6I CCWGG 4 cut(s) 316, 724, 811, 890
PspEI GGTNACC 1 cut(s) 776
PspGI CCWGG 4 cut(s) 316, 724, 811, 890
PspN4I GGNNCC 3 cut(s) 282, 401, 870
PspPI GGNCC 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 401, 683
RsaNI GTAC 2 cut(s) 400, 682
RseI CAYNNNNRTG 3 cut(s) 498, 555, 669
SaqAI TTAA 3 cut(s) 125, 383, 669
SatI GCNGC 3 cut(s) 450, 722, 849
Sau3AI GATC 2 cut(s) 166, 861
Sau96I GGNCC 1 cut(s) 928
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 4 cut(s) 318, 726, 813, 892
SduI GDGCHC 2 cut(s) 285, 824
SfaNI GCATC 3 cut(s) 207, 436, 610
SinI GGWCC 1 cut(s) 928
SmiMI CAYNNNNRTG 3 cut(s) 498, 555, 669
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 1 cut(s) 321
SsiI CCGC 2 cut(s) 23, 541
SspI AATATT 1 cut(s) 442
SspMI CTAG 5 cut(s) 30, 294, 372, 396, 692
StyD4I CCNGG 4 cut(s) 316, 724, 811, 890
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 418, 782
TaqI TCGA 1 cut(s) 269
TasI AATT 1 cut(s) 321
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 5 cut(s) 6, 90, 136, 481, 913
Tru1I TTAA 3 cut(s) 125, 383, 669
Tru9I TTAA 3 cut(s) 125, 383, 669
TscAI CASTG 3 cut(s) 25, 421, 829
TseFI GTSAC 4 cut(s) 61, 406, 776, 977
TseI GCWGC 3 cut(s) 449, 721, 848
Tsp45I GTSAC 4 cut(s) 61, 406, 776, 977
TspDTI ATGAA 2 cut(s) 660, 1031
TspRI CASTG 3 cut(s) 25, 421, 829
Tth111I GACNNNGTC 1 cut(s) 926
VneI GTGCAC 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 928
XagI CCTNNNNNAGG 1 cut(s) 741
XceI RCATGY 1 cut(s) 554
XmaJI CCTAGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 5 cut(s) 30, 294, 372, 396, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.