Rw4G027780

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001774
Physical Location & Seq
Reverse (-)
54500157 .. 54505731
5575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027780.1

Sequence Viewer

Length: 1194 bp
ATGGGAATCCTTTCACGCAGTGCGGTTGCTAGAAAACCAAATGAGACAATGAGGCTCATTGTGACAACTTTTGTAGGAGTAGTTTTTGGATTCTTGATAGGTGTATCCTTTCCAACATTGTCATTAACGAAGCTGAATCTCTCATCCAGCCTTCTTCCATCAGTTGATCTATCATACAATGAGAAAGGGAAATCAAGCATCTCAGATTTTTATTCTTATGTGAAGAAAAATAGTAGCTCAACTCAATCTCAGAGACGAAATGATACATCGAAGATTTGGGTGCCCACAAATCCTAGAGGTGCAGAAATGCTACCCCCAGGAATTGTTGAAGCTGAGTCAGACTACTACTTGCGCAGATTATGGGGCAAGCCTAGTGAGGACTTAACAACCAAACCTAGGTACCTTGTGACATTCACTGTGGGTATCAAACAGAAAAATAATATTGATGCAGCTGTGAAAAAGTTTTCGGAGGACTTTACGATTCTTCTTTTCCATTATGATGGGATAACAACCGAATGGGATGACCTTGAGTGGTCTAAGCGGGCTATACATGTTAGCGTTCGCAAGCAAACTAAATGGTGGTATGCCAAGCGATTTTTGCATCCTGACATTGTTGCCCCATACGATTACATATTTATCTGGGATGAAGACCTCGGAGTAGAGCATTTTAATGCTGAGGAGTACATAAAGCTAGTCAGGAAGCATGGTTTGGAGATCTCGCAGCCTGGTTTAGAACCTAACAAAGGATTGACATGGCAGATGACAAAGAGAAGAGGTGACCGTGAAGTCCACAAACAAACAGAGGAGAAACCAGGCTGGTGCACTGACCCACATCTGCCTCCATGTGCAGCGTTCGTTGAGATCATGGCTCCCGTATTTTCCCGAAGTGCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCCACGGGTGGGGTCTTGACTTTGCCCTTAGAAAATGTGTAGAGCCTGCCCATGAGAAGATAGGAGTTGTAGATTCTCAGTGGATTGTTCATCAAACTGTTCCATCGCTCGGTAGTCAGGGTGAATCACAAGGTGGAAAAGCGCCATGGCAAGGGGTGAGGGAAAGGTGCAGAAAGGAATGGACAATGTTTCAGATGAGAGTCGCAAATGCAGAAAGTGCTTATTTTAAAGCAATGGAGATGTATAATTCGACGACCGCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

397

Amino Acids

45.61

Weight (kDa)

8.88

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 96 - 382 3.7e-143 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
Acc16I TGCGCA 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 2 cut(s) 280, 399
AciI CCGC 3 cut(s) 23, 541, 1185
AdeI CACNNNGTG 2 cut(s) 20, 1061
AfaI GTAC 2 cut(s) 401, 683
AfiI CCNNNNNNNGG 5 cut(s) 396, 743, 937, 1037, 1079
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 4 cut(s) 316, 724, 811, 890
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 133, 237, 332, 452, 691
AluI AGCT 5 cut(s) 133, 237, 332, 452, 691
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 2 cut(s) 38, 247
Alw44I GTGCAC 1 cut(s) 820
ApaLI GTGCAC 1 cut(s) 820
ApeKI GCWGC 3 cut(s) 449, 721, 848
Asp700I GAANNNNTTC 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 399
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 3 cut(s) 354, 897, 1072
AspS9I GGNCC 1 cut(s) 928
AsuHPI GGTGA 3 cut(s) 788, 1061, 1096
AvaII GGWCC 1 cut(s) 928
AvrII CCTAGG 1 cut(s) 395
BaeGI GKGCMC 2 cut(s) 285, 824
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BanI GGYRCC 2 cut(s) 280, 399
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 824
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 461, 733, 860
BccI CCATC 3 cut(s) 166, 494, 1039
BciT130I CCWGG 4 cut(s) 318, 726, 813, 892
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 38, 247
BfaI CTAG 6 cut(s) 30, 294, 372, 396, 692, 1192
BfoI RGCGCY 2 cut(s) 898, 1073
BfuI GTATCC 1 cut(s) 115
BglII AGATCT 1 cut(s) 714
BisI GCNGC 3 cut(s) 450, 722, 849
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 451, 723, 850
Bme1390I CCNGG 4 cut(s) 318, 726, 813, 892
Bme18I GGWCC 1 cut(s) 928
BmgT120I GGNCC 1 cut(s) 928
BmiI GGNNCC 3 cut(s) 282, 401, 870
BmrFI CCNGG 4 cut(s) 318, 726, 813, 892
BmsI GCATC 3 cut(s) 207, 436, 610
BpiI GAAGAC 1 cut(s) 654
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 5 cut(s) 316, 395, 652, 931, 1073
Bsc4I CCNNNNNNNGG 5 cut(s) 396, 743, 937, 1037, 1079
Bse3DI GCAATG 1 cut(s) 1167
BseBI CCWGG 4 cut(s) 318, 726, 813, 892
BseDI CCNNGG 5 cut(s) 316, 395, 652, 931, 1073
BseGI GGATG 4 cut(s) 143, 526, 601, 649
BseLI CCNNNNNNNGG 5 cut(s) 396, 743, 937, 1037, 1079
BseMI GCAATG 1 cut(s) 1167
BseMII CTCAG 5 cut(s) 216, 263, 324, 666, 1019
BseRI GAGGAG 2 cut(s) 692, 818
BseSI GKGCMC 2 cut(s) 285, 824
BseXI GCAGC 3 cut(s) 461, 733, 860
BsgI GTGCAG 3 cut(s) 321, 867, 1117
Bsh1285I CGRYCG 1 cut(s) 1185
BshNI GGYRCC 2 cut(s) 280, 399
BsiEI CGRYCG 1 cut(s) 1185
BsiHKAI GWGCWC 1 cut(s) 824
BslI CCNNNNNNNGG 5 cut(s) 396, 743, 937, 1037, 1079
BsmAI GTCTC 2 cut(s) 38, 247
BsmBI CGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 285, 824
Bsp143I GATC 3 cut(s) 166, 714, 861
Bsp19I CCATGG 1 cut(s) 1073
BspACI CCGC 3 cut(s) 23, 541, 1185
BspCNI CTCAG 5 cut(s) 215, 262, 325, 667, 1018
BspLI GGNNCC 3 cut(s) 282, 401, 870
BspT107I GGYRCC 2 cut(s) 280, 399
BsrDI GCAATG 1 cut(s) 1167
BssECI CCNNGG 5 cut(s) 316, 395, 652, 931, 1073
BssMI GATC 3 cut(s) 166, 714, 861
BssT1I CCWWGG 2 cut(s) 395, 1073
Bst2UI CCWGG 4 cut(s) 318, 726, 813, 892
Bst4CI ACNGT 3 cut(s) 418, 782, 1027
Bst6I CTCTTC 1 cut(s) 766
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstC8I GCNNGC 4 cut(s) 368, 543, 566, 975
BstDEI CTNAG 7 cut(s) 202, 249, 333, 537, 675, 956, 1005
BstDSI CCRYGG 2 cut(s) 931, 1073
BstEII GGTNACC 1 cut(s) 776
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 4 cut(s) 143, 526, 601, 649
BstH2I RGCGCY 2 cut(s) 898, 1073
BstHHI GCGC 3 cut(s) 354, 897, 1072
BstKTI GATC 3 cut(s) 169, 717, 864
BstMAI GTCTC 2 cut(s) 38, 247
BstMBI GATC 3 cut(s) 166, 714, 861
BstMCI CGRYCG 1 cut(s) 1185
BstMWI GCNNNNNNNGC 2 cut(s) 598, 1145
BstNI CCWGG 4 cut(s) 318, 726, 813, 892
BstNSI RCATGY 1 cut(s) 554
BstPI GGTNACC 1 cut(s) 776
BstSCI CCNGG 4 cut(s) 316, 724, 811, 890
BstSLI GKGCMC 2 cut(s) 285, 824
BstV1I GCAGC 3 cut(s) 461, 733, 860
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 714
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 115
BtgI CCRYGG 2 cut(s) 931, 1073
BtgZI GCGATG 1 cut(s) 1017
BtsCI GGATG 4 cut(s) 143, 526, 601, 649
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 4 cut(s) 25, 414, 822, 1013
Cac8I GCNNGC 4 cut(s) 368, 543, 566, 975
CfoI GCGC 3 cut(s) 354, 897, 1072
Cfr13I GGNCC 1 cut(s) 928
Csp6I GTAC 2 cut(s) 400, 682
CviAII CATG 7 cut(s) 551, 704, 753, 843, 865, 980, 1074
CviQI GTAC 2 cut(s) 400, 682
DdeI CTNAG 7 cut(s) 202, 249, 333, 537, 675, 956, 1005
DpnI GATC 3 cut(s) 168, 716, 863
DpnII GATC 3 cut(s) 166, 714, 861
DraI TTTAAA 1 cut(s) 1156
DraIII CACNNNGTG 2 cut(s) 20, 1061
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1104I CTCTTC 1 cut(s) 766
EarI CTCTTC 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 395, 1073
Eco47I GGWCC 1 cut(s) 928
Eco91I GGTNACC 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoO65I GGTNACC 1 cut(s) 776
EcoRII CCWGG 4 cut(s) 316, 724, 811, 890
EcoT14I CCWWGG 2 cut(s) 395, 1073
ErhI CCWWGG 2 cut(s) 395, 1073
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 7 cut(s) 554, 707, 756, 846, 868, 983, 1077
FatI CATG 7 cut(s) 550, 703, 752, 842, 864, 979, 1073
FauI CCCGC 1 cut(s) 534
FauNDI CATATG 1 cut(s) 909
Fnu4HI GCNGC 3 cut(s) 450, 722, 849
FokI GGATG 4 cut(s) 130, 533, 588, 656
Fsp4HI GCNGC 3 cut(s) 450, 722, 849
FspBI CTAG 6 cut(s) 30, 294, 372, 396, 692, 1192
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 3 cut(s) 353, 896, 1071
GluI GCNGC 3 cut(s) 450, 722, 849
HaeII RGCGCY 2 cut(s) 898, 1073
HhaI GCGC 3 cut(s) 354, 897, 1072
Hin1II CATG 7 cut(s) 554, 707, 756, 846, 868, 983, 1077
Hin6I GCGC 3 cut(s) 352, 895, 1070
HinP1I GCGC 3 cut(s) 352, 895, 1070
HinfI GANTC 9 cut(s) 6, 90, 136, 335, 481, 913, 1001, 1052, 1128
HphI GGTGA 3 cut(s) 788, 1061, 1096
Hpy166II GTNNAC 3 cut(s) 790, 822, 931
Hpy188I TCNGA 7 cut(s) 205, 252, 340, 469, 656, 918, 1122
Hpy188III TCNNGA 5 cut(s) 94, 605, 697, 882, 944
Hpy8I GTNNAC 3 cut(s) 790, 822, 931
Hpy99I CGWCG 1 cut(s) 1183
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 3 cut(s) 418, 782, 1027
HpyCH4V TGCA 7 cut(s) 302, 449, 601, 822, 848, 1098, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 598, 1145
HpyF3I CTNAG 7 cut(s) 202, 249, 333, 537, 675, 956, 1005
Hsp92II CATG 7 cut(s) 554, 707, 756, 846, 868, 983, 1077
HspAI GCGC 3 cut(s) 352, 895, 1070
KpnI GGTACC 1 cut(s) 403
Kzo9I GATC 3 cut(s) 166, 714, 861
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 3 cut(s) 461, 733, 860
LweI GCATC 3 cut(s) 207, 436, 610
MaeI CTAG 6 cut(s) 30, 294, 372, 396, 692, 1192
MaeIII GTNAC 3 cut(s) 61, 406, 776
MalI GATC 3 cut(s) 168, 716, 863
MboI GATC 3 cut(s) 166, 714, 861
MboII GAAGA 7 cut(s) 146, 235, 283, 476, 659, 783, 997
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 2 cut(s) 285, 824
MluCI AATT 2 cut(s) 321, 1174
MlyI GAGTC 2 cut(s) 344, 1137
MmeI TCCRAC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 4 cut(s) 125, 383, 669, 1155
MslI CAYNNNNRTG 2 cut(s) 498, 669
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 4 cut(s) 318, 726, 813, 892
MvaI CCWGG 4 cut(s) 318, 726, 813, 892
MwoI GCNNNNNNNGC 2 cut(s) 598, 1145
NcoI CCATGG 1 cut(s) 1073
NdeI CATATG 1 cut(s) 909
NdeII GATC 3 cut(s) 166, 714, 861
NlaIII CATG 7 cut(s) 554, 707, 756, 846, 868, 983, 1077
NlaIV GGNNCC 3 cut(s) 282, 401, 870
NmuCI GTSAC 3 cut(s) 61, 406, 776
NsbI TGCGCA 1 cut(s) 353
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 7 cut(s) 6, 90, 136, 481, 913, 1001, 1052
PflFI GACNNNGTC 1 cut(s) 926
PkrI GCNGC 3 cut(s) 451, 723, 850
PleI GAGTC 2 cut(s) 343, 1136
PpsI GAGTC 2 cut(s) 343, 1136
PscI ACATGT 1 cut(s) 550
Psp6I CCWGG 4 cut(s) 316, 724, 811, 890
PspEI GGTNACC 1 cut(s) 776
PspGI CCWGG 4 cut(s) 316, 724, 811, 890
PspN4I GGNNCC 3 cut(s) 282, 401, 870
PspPI GGNCC 1 cut(s) 928
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 401, 683
RsaNI GTAC 2 cut(s) 400, 682
RseI CAYNNNNRTG 2 cut(s) 498, 669
SaqAI TTAA 4 cut(s) 125, 383, 669, 1155
SatI GCNGC 3 cut(s) 450, 722, 849
Sau3AI GATC 3 cut(s) 166, 714, 861
Sau96I GGNCC 1 cut(s) 928
SchI GAGTC 2 cut(s) 344, 1137
ScrFI CCNGG 4 cut(s) 318, 726, 813, 892
SduI GDGCHC 2 cut(s) 285, 824
SfaNI GCATC 3 cut(s) 207, 436, 610
SinI GGWCC 1 cut(s) 928
SmiMI CAYNNNNRTG 2 cut(s) 498, 669
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 2 cut(s) 321, 1174
SsiI CCGC 3 cut(s) 23, 541, 1185
SspI AATATT 1 cut(s) 442
SspMI CTAG 6 cut(s) 30, 294, 372, 396, 692, 1192
StyD4I CCNGG 4 cut(s) 316, 724, 811, 890
StyI CCWWGG 2 cut(s) 395, 1073
TaaI ACNGT 3 cut(s) 418, 782, 1027
TaqI TCGA 2 cut(s) 269, 1178
TasI AATT 2 cut(s) 321, 1174
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 7 cut(s) 6, 90, 136, 481, 913, 1001, 1052
Tru1I TTAA 4 cut(s) 125, 383, 669, 1155
Tru9I TTAA 4 cut(s) 125, 383, 669, 1155
TscAI CASTG 4 cut(s) 25, 421, 829, 1013
TseFI GTSAC 3 cut(s) 61, 406, 776
TseI GCWGC 3 cut(s) 449, 721, 848
Tsp45I GTSAC 3 cut(s) 61, 406, 776
TspDTI ATGAA 2 cut(s) 660, 1007
TspRI CASTG 4 cut(s) 25, 421, 829, 1013
Tth111I GACNNNGTC 1 cut(s) 926
VneI GTGCAC 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 928
XagI CCTNNNNNAGG 1 cut(s) 741
XceI RCATGY 1 cut(s) 554
XmaJI CCTAGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 6 cut(s) 30, 294, 372, 396, 692, 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.