Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001774

Physical Location & Seq

Genomic Coordinates Forward (+)

43804848 .. 43806429

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCTAACCTTGGTCAAGTTGTTTCTGCAGGGATCCAGAGCGCCAATGATGCAGGATTAATAATTTTCAGCCACAGCCTCGTAAACCATGCGATAGTGTCTATCTTGATAATGTACCTCACTGTTAATTGGCAGAATCAACATTTTCAAATAGCTGCTGTAGTTACAAATGTGCAAGAAGGGTTTTCAGACATCTTGGTGATCATCTTAGCTCATTTCTCGCGTACATACAGGGGTTCGTATAATATAATTGTCACCACAAACGCTGCCTATATTGCTGGACTGGCTATACTGTGGCGTTCTGCTGAGCATATGACCGCAGATACAGCTGCCAAGGTACTATGGTGCTGTGTTACTGCTGACATTGGGCGAAGCAGGGCGGTCGGCTGCCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

6.49

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850
fragaria_vesca	FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710
malus_domestica	MD13G1099800.v1.1 MD16G1100800.v1.1
prunus_persica	Prupe.1G246200_v2.0.a1 Prupe.1G246200_v2.0.a1 Prupe.1G246200_v2.0.a1
pyrus_communis	pycom13g08720 pycom16g08530
rosa_chinensis	RchiOBHm_Chr4g0433141
rosa_laevigata	RLG00000006781
rosa_multiflora	Rmu_ssc0000295.1_g000051
rosa_roxburghii	Rroxscaffold_5G00374620
rosa_rugosa	Rorug04G0265700 Rorug04G0265800 Rorug04G0265800 Rorug04G0265900 Rorug04G0266000 Rorug04G0266100 Rorug04G0266200.1
rosa_samantha	Rh4AG319800 Rh4BG328100 Rh4CG343500 Rh4DG323300
rosa_wichuraiana	Rw4G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	318, 380
AclWI	GGATC	2 cut(s)	28, 41
AfaI	GTAC	3 cut(s)	116, 226, 339
AgsI	TTSAA	2 cut(s)	149, 395
AluBI	AGCT	3 cut(s)	155, 212, 329
AluI	AGCT	3 cut(s)	155, 212, 329
AlwI	GGATC	2 cut(s)	28, 41
ApeKI	GCWGC	4 cut(s)	155, 266, 329, 387
AseI	ATTAAT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	211, 247
BaeI	ACNNNNGTAYC	2 cut(s)	329, 362
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	142, 253, 316, 374
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BclI	TGATCA	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	27, 159
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	4 cut(s)	156, 267, 330, 388
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	4 cut(s)	157, 268, 331, 389
BmiI	GGNNCC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	10, 333
Bse1I	ACTGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	10, 333
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	142, 253, 316, 374
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	33, 201
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	318, 380
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	28, 41
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	10, 333
BssMI	GATC	2 cut(s)	33, 201
BssT1I	CCWWGG	2 cut(s)	10, 333
Bst4CI	ACNGT	2 cut(s)	124, 294
BstDEI	CTNAG	2 cut(s)	208, 306
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	36, 204
BstMBI	GATC	2 cut(s)	33, 201
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 275, 284, 326
BstSFI	CTRYAG	2 cut(s)	27, 159
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	142, 253, 316, 374
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	115, 225, 338
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	72, 78, 155, 212, 287, 329, 387
CviKI_1	RGCY	7 cut(s)	72, 78, 155, 212, 287, 329, 387
CviQI	GTAC	3 cut(s)	115, 225, 338
DdeI	CTNAG	2 cut(s)	208, 306
DpnI	GATC	2 cut(s)	35, 203
DpnII	GATC	2 cut(s)	33, 201
Eco130I	CCWWGG	2 cut(s)	10, 333
EcoT14I	CCWWGG	2 cut(s)	10, 333
ErhI	CCWWGG	2 cut(s)	10, 333
FaeI	CATG	1 cut(s)	92
FaiI	YATR	9 cut(s)	90, 229, 243, 248, 273, 290, 312, 314, 343
FatI	CATG	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	156, 267, 330, 388
Fsp4HI	GCNGC	4 cut(s)	156, 267, 330, 388
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	156, 267, 330, 388
HaeII	RGCGCY	1 cut(s)	45
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	2 cut(s)	211, 247
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	37, 106
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	124, 294
HpyCH4V	TGCA	3 cut(s)	29, 53, 175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 275, 284, 326
HpyF3I	CTNAG	2 cut(s)	208, 306
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	33, 201
LpnPI	CCDG	7 cut(s)	15, 39, 50, 217, 264, 269, 361
Lsp1109I	GCAGC	4 cut(s)	142, 253, 316, 374
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	3 cut(s)	163, 253, 352
MalI	GATC	2 cut(s)	35, 203
MboI	GATC	2 cut(s)	33, 201
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	3 cut(s)	63, 127, 249
MnlI	CCTC	2 cut(s)	89, 128
MseI	TTAA	2 cut(s)	59, 126
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	50, 275, 284, 326
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	2 cut(s)	33, 201
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	157, 268, 331, 389
PshBI	ATTAAT	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	116, 226, 339
RsaNI	GTAC	3 cut(s)	115, 225, 338
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	59, 126
SatI	GCNGC	4 cut(s)	156, 267, 330, 388
Sau3AI	GATC	2 cut(s)	33, 201
SetI	ASST	6 cut(s)	12, 120, 157, 214, 331, 339
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	2 cut(s)	27, 159
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	63, 127, 249
SsiI	CCGC	2 cut(s)	318, 380
StyI	CCWWGG	2 cut(s)	10, 333
TaaI	ACNGT	2 cut(s)	124, 294
TasI	AATT	3 cut(s)	63, 127, 249
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	59, 126
Tru9I	TTAA	2 cut(s)	59, 126
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	155, 266, 329, 387
Tsp45I	GTSAC	1 cut(s)	253
TspRI	CASTG	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.