Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001774

Physical Location & Seq

Genomic Coordinates Forward (+)

5771259 .. 5774023

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08720.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTATAGTCAGAAGCTTGTAAATAACATGAGAATCCTTTCGCGCAGTTCGGGTGGTAAAAAACCAAATGAGAACATGAGGCTTATTGTGACAACTTTTGTAGGTGTAGCTTTTGGATTCTTGATAGGTGTGTCCTTTCCAACATTGTCACTAACAAAGCTGAATCTCTCATCCAGCCTTCTTCCAACTGTTGATCTTTCATACACTGAGGACAAGAAATCAGACATCTCCAGCCAATCACAAAGTTCTTGGCCTTCTGAAAGGAGTAAAAATAGCTCAAGTCAAGATCAGAGTTCGAATGGCAAATCGAGGATTTGGGTGCCATCAAATCCTAGAGGTGCAGAAATGCTACCACCAGGAATTGTTGCAGCCGAGTCAGACTTCTACTTGCGCAGATTATGGGGCAAGCCTAGTGAGGACTTGACCATCAAACCAAGGTACCTAGTGACATTCACTGTGGGTTTGAATCAGAAAAAGAATATTGATGCAGCAGTGAAAAAGTTTTCAGAGAACTTTACAATTCTCCTTTTTCATTACGATGGCCAAACAACTGAGTGGGATGACTTAGAGTGGTCTAAGCGTGCTATACATATTAGTGCTCGTAAGCAGACTAAATGGTGGTATGCCAAGCGGTTTTTGCATCCTGACATTGTGGCGCCATACGACTACATATTTATCTGGGATGAAGACCTGGGAGTAGAGCATTTTAATGCAGAAGTATACCTAAGACTAGTGAAGAAGCATGGTTTGGAGATTTCACAGCCTGGTTTGGAACCCAACAAAGGTTTAACATGGCAGATGACAAAGAGGAGGGTCGATCGTGAAGTTCATAAACAAACAGAGGAAAAACCGGGCTGGTGCACTGACCCACTTCTGCCTCCATGTGCAGCCTTTATTGAAATCATGGCTCCAGTATTTTCTCGAAGTGCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCCACGGCTGGGGTCTTGATTTTGCCCTGAGAAAATGTGTAGAGCCTGCGCACGAGAAGATTGGCGTTGTAGATTCTCAGTGGATCTGGGGTTCATCAAACTGTTCCTTCATTGGGGAGCCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

365

Amino Acids

41.6

Weight (kDa)

8.8

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850 AT1G67850
fragaria_vesca	FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710 FvH4_4g25710
malus_domestica	MD13G1099800.v1.1 MD16G1100800.v1.1
prunus_persica	Prupe.1G246200_v2.0.a1 Prupe.1G246200_v2.0.a1 Prupe.1G246200_v2.0.a1
pyrus_communis	pycom13g08720 pycom16g08530
rosa_chinensis	RchiOBHm_Chr4g0433141
rosa_laevigata	RLG00000006781
rosa_multiflora	Rmu_ssc0000295.1_g000051
rosa_roxburghii	Rroxscaffold_5G00374620
rosa_rugosa	Rorug04G0265700 Rorug04G0265800 Rorug04G0265800 Rorug04G0265900 Rorug04G0266000 Rorug04G0266100 Rorug04G0266200.1
rosa_samantha	Rh4AG319800 Rh4BG328100 Rh4CG343500 Rh4DG323300
rosa_wichuraiana	Rw4G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	392, 1017
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	3 cut(s)	319, 438, 655
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	1 cut(s)	43
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	1 cut(s)	1058
AcoI	YGGCCR	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	3 cut(s)	782, 976, 1080
AgsI	TTSAA	2 cut(s)	466, 899
AhlI	ACTAGT	1 cut(s)	730
AjnI	CCWGG	5 cut(s)	355, 690, 763, 929, 1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AloI	GAACNNNNNNTCC	2 cut(s)	1042, 1074
AluBI	AGCT	4 cut(s)	16, 110, 160, 276
AluI	AGCT	4 cut(s)	16, 110, 160, 276
Alw21I	GWGCWC	2 cut(s)	601, 863
Alw44I	GTGCAC	1 cut(s)	859
AlwI	GGATC	1 cut(s)	1058
AoxI	GGCC	2 cut(s)	251, 541
ApaLI	GTGCAC	1 cut(s)	859
ApeKI	GCWGC	3 cut(s)	368, 488, 887
Asp700I	GAANNNNTTC	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	438
AspLEI	GCGC	5 cut(s)	45, 393, 658, 936, 1018
AspS9I	GGNCC	1 cut(s)	967
AsuC2I	CCSGG	1 cut(s)	852
AsuII	TTCGAA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	967
BaeGI	GKGCMC	1 cut(s)	863
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	3 cut(s)	319, 438, 655
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	2 cut(s)	601, 863
BbvI	GCAGC	3 cut(s)	380, 500, 899
BccI	CCATC	3 cut(s)	331, 434, 533
BceAI	ACGGC	1 cut(s)	988
BciT130I	CCWGG	5 cut(s)	357, 692, 765, 931, 1089
BcnI	CCSGG	1 cut(s)	852
BcuI	ACTAGT	1 cut(s)	730
BfaI	CTAG	4 cut(s)	333, 411, 443, 731
BfoI	RGCGCY	2 cut(s)	659, 937
BisI	GCNGC	3 cut(s)	369, 489, 888
BlsI	GCNGC	3 cut(s)	370, 490, 889
Bme1390I	CCNGG	6 cut(s)	357, 692, 765, 852, 931, 1089
Bme18I	GGWCC	1 cut(s)	967
BmgT120I	GGNCC	1 cut(s)	967
BmiI	GGNNCC	6 cut(s)	321, 440, 657, 774, 909, 1086
BmrFI	CCNGG	6 cut(s)	357, 692, 765, 852, 931, 1089
BmsI	GCATC	2 cut(s)	475, 649
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	2 cut(s)	214, 894
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	852
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	4 cut(s)	434, 691, 970, 1088
BsaXI	ACNNNNNCTCC	1 cut(s)	1076
Bsc4I	CCNNNNNNNGG	3 cut(s)	782, 976, 1080
Bse1I	ACTGG	1 cut(s)	911
BseBI	CCWGG	5 cut(s)	357, 692, 765, 931, 1089
BseDI	CCNNGG	4 cut(s)	434, 691, 970, 1088
BseGI	GGATG	4 cut(s)	170, 565, 640, 688
BseLI	CCNNNNNNNGG	3 cut(s)	782, 976, 1080
BseMII	CTCAG	4 cut(s)	198, 543, 986, 1058
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	1 cut(s)	823
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	380, 500, 899
BseYI	CCCAGC	1 cut(s)	975
BsgI	GTGCAG	2 cut(s)	360, 906
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	2 cut(s)	253, 543
BshNI	GGYRCC	3 cut(s)	319, 438, 655
BsiEI	CGRYCG	1 cut(s)	820
BsiHKAI	GWGCWC	2 cut(s)	601, 863
BsiSI	CCGG	1 cut(s)	851
BslI	CCNNNNNNNGG	3 cut(s)	782, 976, 1080
BsnI	GGCC	2 cut(s)	253, 543
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	601, 863
Bsp143I	GATC	4 cut(s)	193, 286, 817, 1050
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	2 cut(s)	253, 543
BspCNI	CTCAG	4 cut(s)	199, 544, 987, 1057
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	6 cut(s)	321, 440, 657, 774, 909, 1086
BspPI	GGATC	1 cut(s)	1058
BspT104I	TTCGAA	1 cut(s)	296
BspT107I	GGYRCC	3 cut(s)	319, 438, 655
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	4 cut(s)	434, 691, 970, 1088
BssMI	GATC	4 cut(s)	193, 286, 817, 1050
BssNAI	GTATAC	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	656
BssSI	CACGAG	1 cut(s)	1019
BssT1I	CCWWGG	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	721
Bst2BI	CACGAG	1 cut(s)	1019
Bst2UI	CCWGG	5 cut(s)	357, 692, 765, 931, 1089
Bst4CI	ACNGT	3 cut(s)	190, 457, 1070
BstACI	GRCGYC	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	407, 582, 1014
BstDEI	CTNAG	7 cut(s)	207, 552, 565, 576, 725, 995, 1044
BstDSI	CCRYGG	1 cut(s)	970
BstF5I	GGATG	4 cut(s)	170, 565, 640, 688
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	659, 937
BstHHI	GCGC	5 cut(s)	45, 393, 658, 936, 1018
BstKTI	GATC	4 cut(s)	196, 289, 820, 1053
BstMBI	GATC	4 cut(s)	193, 286, 817, 1050
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	5 cut(s)	357, 692, 765, 931, 1089
BstSCI	CCNGG	6 cut(s)	355, 690, 763, 850, 929, 1087
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	380, 500, 899
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	1050
BstYI	RGATCY	1 cut(s)	1050
BstZ17I	GTATAC	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	253, 543
BtgI	CCRYGG	1 cut(s)	970
BtsCI	GGATG	4 cut(s)	170, 565, 640, 688
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	5 cut(s)	204, 453, 498, 861, 1052
Cac8I	GCNNGC	3 cut(s)	407, 582, 1014
CfoI	GCGC	5 cut(s)	45, 393, 658, 936, 1018
Cfr13I	GGNCC	1 cut(s)	967
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	6 cut(s)	28, 76, 743, 792, 882, 904
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	7 cut(s)	207, 552, 565, 576, 725, 995, 1044
DinI	GGCGCC	1 cut(s)	657
DpnI	GATC	4 cut(s)	195, 288, 819, 1052
DpnII	GATC	4 cut(s)	193, 286, 817, 1050
EaeI	YGGCCR	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	967
EcoRII	CCWGG	5 cut(s)	355, 690, 763, 929, 1087
EcoT14I	CCWWGG	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	657
EheI	GGCGCC	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	6 cut(s)	31, 79, 746, 795, 885, 907
FatI	CATG	6 cut(s)	27, 75, 742, 791, 881, 903
FauNDI	CATATG	1 cut(s)	948
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	3 cut(s)	369, 489, 888
FokI	GGATG	4 cut(s)	157, 572, 627, 695
Fsp4HI	GCNGC	3 cut(s)	369, 489, 888
FspBI	CTAG	4 cut(s)	333, 411, 443, 731
FspI	TGCGCA	2 cut(s)	392, 1017
GlaI	GCGC	5 cut(s)	44, 392, 657, 935, 1017
GluI	GCNGC	3 cut(s)	369, 489, 888
GsaI	CCCAGC	1 cut(s)	979
GsuI	CTGGAG	2 cut(s)	214, 894
HaeII	RGCGCY	2 cut(s)	659, 937
HaeIII	GGCC	2 cut(s)	253, 543
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	5 cut(s)	45, 393, 658, 936, 1018
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	6 cut(s)	31, 79, 746, 795, 885, 907
Hin6I	GCGC	5 cut(s)	43, 391, 656, 934, 1016
HinP1I	GCGC	5 cut(s)	43, 391, 656, 934, 1016
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	7 cut(s)	33, 117, 163, 374, 466, 952, 1040
HpaII	CCGG	1 cut(s)	851
Hpy166II	GTNNAC	3 cut(s)	721, 861, 970
Hpy188I	TCNGA	8 cut(s)	12, 223, 259, 291, 379, 471, 508, 957
Hpy188III	TCNNGA	6 cut(s)	121, 284, 644, 821, 921, 983
Hpy8I	GTNNAC	3 cut(s)	721, 861, 970
HpyAV	CCTTC	3 cut(s)	188, 264, 1084
HpyCH4III	ACNGT	3 cut(s)	190, 457, 1070
HpyCH4V	TGCA	7 cut(s)	341, 368, 488, 640, 713, 861, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	7 cut(s)	207, 552, 565, 576, 725, 995, 1044
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	6 cut(s)	31, 79, 746, 795, 885, 907
HspAI	GCGC	5 cut(s)	43, 391, 656, 934, 1016
KasI	GGCGCC	1 cut(s)	655
KpnI	GGTACC	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	193, 286, 817, 1050
LmnI	GCTCC	2 cut(s)	913, 1084
Lsp1109I	GCAGC	3 cut(s)	380, 500, 899
LweI	GCATC	2 cut(s)	475, 649
MaeI	CTAG	4 cut(s)	333, 411, 443, 731
MaeIII	GTNAC	3 cut(s)	88, 147, 445
MalI	GATC	4 cut(s)	195, 288, 819, 1052
MboI	GATC	4 cut(s)	193, 286, 817, 1050
MboII	GAAGA	4 cut(s)	173, 698, 748, 1036
MflI	RGATCY	1 cut(s)	1050
MhlI	GDGCHC	2 cut(s)	601, 863
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	2 cut(s)	360, 519
MluNI	TGGCCA	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	164, 209
MnlI	CCTC	9 cut(s)	72, 202, 303, 329, 409, 801, 804, 835, 888
Mox20I	TGGCCA	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	2 cut(s)	708, 788
MslI	CAYNNNNRTG	3 cut(s)	537, 594, 708
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	6 cut(s)	357, 692, 765, 852, 931, 1089
MvaI	CCWGG	5 cut(s)	357, 692, 765, 931, 1089
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	637
NarI	GGCGCC	1 cut(s)	656
NciI	CCSGG	1 cut(s)	852
NdeI	CATATG	1 cut(s)	948
NdeII	GATC	4 cut(s)	193, 286, 817, 1050
NlaIII	CATG	6 cut(s)	31, 79, 746, 795, 885, 907
NlaIV	GGNNCC	6 cut(s)	321, 440, 657, 774, 909, 1086
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	3 cut(s)	88, 147, 445
NsbI	TGCGCA	2 cut(s)	392, 1017
NspV	TTCGAA	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	6 cut(s)	33, 117, 163, 466, 952, 1040
PflFI	GACNNNGTC	1 cut(s)	965
PkrI	GCNGC	3 cut(s)	370, 490, 889
Ple19I	CGATCG	1 cut(s)	820
PleI	GAGTC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	5 cut(s)	355, 690, 763, 929, 1087
PspFI	CCCAGC	1 cut(s)	975
PspGI	CCWGG	5 cut(s)	355, 690, 763, 929, 1087
PspN4I	GGNNCC	6 cut(s)	321, 440, 657, 774, 909, 1086
PspPI	GGNCC	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	1050
PsyI	GACNNNGTC	1 cut(s)	965
PvuI	CGATCG	1 cut(s)	820
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	3 cut(s)	537, 594, 708
SaqAI	TTAA	2 cut(s)	708, 788
SatI	GCNGC	3 cut(s)	369, 489, 888
Sau3AI	GATC	4 cut(s)	193, 286, 817, 1050
Sau96I	GGNCC	1 cut(s)	967
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	6 cut(s)	357, 692, 765, 852, 931, 1089
SduI	GDGCHC	2 cut(s)	601, 863
SfaNI	GCATC	2 cut(s)	475, 649
SfoI	GGCGCC	1 cut(s)	657
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	1 cut(s)	967
SmiMI	CAYNNNNRTG	3 cut(s)	537, 594, 708
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	730
Sse9I	AATT	2 cut(s)	360, 519
SsiI	CCGC	1 cut(s)	631
SspDI	GGCGCC	1 cut(s)	655
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	4 cut(s)	333, 411, 443, 731
StyD4I	CCNGG	6 cut(s)	355, 690, 763, 850, 929, 1087
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	190, 457, 1070
TaqI	TCGA	4 cut(s)	296, 308, 816, 922
TasI	AATT	2 cut(s)	360, 519
TfiI	GAWTC	6 cut(s)	33, 117, 163, 466, 952, 1040
Tru1I	TTAA	2 cut(s)	708, 788
Tru9I	TTAA	2 cut(s)	708, 788
TscAI	CASTG	5 cut(s)	211, 460, 498, 868, 1052
TseFI	GTSAC	3 cut(s)	88, 147, 445
TseI	GCWGC	3 cut(s)	368, 488, 887
Tsp45I	GTSAC	3 cut(s)	88, 147, 445
TspDTI	ATGAA	6 cut(s)	189, 521, 699, 818, 1050, 1066
TspRI	CASTG	5 cut(s)	211, 460, 498, 868, 1052
Tth111I	GACNNNGTC	1 cut(s)	965
VneI	GTGCAC	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	967
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	37
XspI	CTAG	4 cut(s)	333, 411, 443, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.