RLG00000006781

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001774
Physical Location & Seq
Forward (+)
10442003 .. 10446903
4901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006781

Sequence Viewer

Length: 1266 bp
ATGAGATCAGCTATCGCTTGCTACCTGCAGTTCCTTTTTCCGTGCATTTATAGTCAGAAGCTTGTAAATAACATGGGAATCCTTTCACGCAGTGCGGTTGCTAGAAAACCAAATGAGACAATGAGGCTTATTGTGACAACTTTTGTAGGAGTAGTTTTTGGATTCTTGATAGGTGTATCCTTTCCAACATTGTCATTAACGAAGCTGAATCTCTCATCCAGCCTTCTTCCATCAGTTGATCTATCATACAATGAGAAAGGGAAATCAAGCATCTCAGATTTTTATTCTTATGTGAAGAAAAATAGTAGCTCAACTCAATCTCAGAGACGAAATGATACATCGAAGATTTGGGTGCCCACAAATCCTAGAGGTGCAGAAATGCTACCCCCAGGAATTGTTGAAGCTGAGTCAGACTTCTACTTGCGCAGATTATGGGGCAAGCCTAGTGAGGACTTAACAACCAAACCGAGGTACCTTGTGACATTCACTGTGGGTATCAAACAGAAAAATAATATTGATGCAGCTGTGAAAAAGTTTTCGGAGGACTTTACGATTCTTCTTTTCCATTACGATGGGATAACAACTGAATGGGATGACCTTGAGTGGTCTAAGCGGGCTATACATGTTAGTGTTCGCAAGCAAACTAAATGGTGGTATGCCAAGCGATTTTTGCATCCTGACATTGTGGCCCCATATGATTACATATTTATCTGGGATGAAGACCTCGGAGTAGAGCATTTTAATGCTGAGGAGTACATAAAGCTAGTCAGGAAGCATGGTTTGGAGATTTCGCAGCCTGGTTTAGAACCTAACAAAGGATTGACATGGCAGATGACAAAGAGAAGAGGTGACCGTGAAGTTCACAAACAGACAGAGGAGAAACCAGGCTGGTGCACTGACCCACATCTGCCTCCATGTGCAGCGTTCGTTGAGATCATGGCTCCCGTATTTTCCCGAAGTGCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCCACGGGTGGGGTCTTGACTTTGCCCTTAGAAAATGTGTAGAGCCTGCCCATGAGAAGATAGGAGTTGTAGATTCTCAGTGGATTGTTCATCAAACTGTTCCATCGCTCGGTAGTCAGGGTGAATCACAAGGTGGAAAAGCGCCATGGCAAGGGGTGAGGGAAAGGTGCAGAAAGGAATGGACAATGTTTCAGATGAGGGTCGCAAATGCAGAAAGTGCGTATTTTAAAGAAATGGAGACGTATAATTCGACGACCGCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

422

Amino Acids

48.43

Weight (kDa)

8.88

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 120 - 406 2.6e-143 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 33
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 2 cut(s) 352, 471
AciI CCGC 3 cut(s) 95, 613, 1257
AdeI CACNNNGTG 2 cut(s) 92, 1133
AfaI GTAC 2 cut(s) 473, 755
AfiI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 4 cut(s) 388, 796, 883, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 7 cut(s) 11, 61, 205, 309, 404, 524, 763
AluI AGCT 7 cut(s) 11, 61, 205, 309, 404, 524, 763
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 3 cut(s) 110, 319, 1232
Alw44I GTGCAC 1 cut(s) 892
AoxI GGCC 1 cut(s) 687
ApaLI GTGCAC 1 cut(s) 892
ApeKI GCWGC 3 cut(s) 521, 793, 920
ArsI GACNNNNNNTTYG 2 cut(s) 1231, 1263
Asp700I GAANNNNTTC 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 471
AspLEI GCGC 3 cut(s) 426, 969, 1144
AspS9I GGNCC 2 cut(s) 688, 1000
AsuHPI GGTGA 3 cut(s) 860, 1133, 1168
AvaII GGWCC 1 cut(s) 1000
BaeGI GKGCMC 2 cut(s) 357, 896
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BanI GGYRCC 2 cut(s) 352, 471
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 896
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 533, 805, 932
BccI CCATC 3 cut(s) 238, 566, 1111
BciT130I CCWGG 4 cut(s) 390, 798, 885, 964
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 110, 319, 1232
BfaI CTAG 5 cut(s) 102, 366, 444, 764, 1264
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 2 cut(s) 970, 1145
BfuAI ACCTGC 1 cut(s) 33
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 3 cut(s) 522, 794, 921
BlsI GCNGC 3 cut(s) 523, 795, 922
Bme1390I CCNGG 4 cut(s) 390, 798, 885, 964
Bme18I GGWCC 1 cut(s) 1000
BmgT120I GGNCC 2 cut(s) 688, 1000
BmiI GGNNCC 4 cut(s) 354, 473, 690, 942
BmrFI CCNGG 4 cut(s) 390, 798, 885, 964
BmsI GCATC 3 cut(s) 279, 508, 682
BpiI GAAGAC 1 cut(s) 726
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 620
BsaJI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
Bsc4I CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
BseBI CCWGG 4 cut(s) 390, 798, 885, 964
BseDI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
BseGI GGATG 4 cut(s) 215, 598, 673, 721
BseLI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
BseMII CTCAG 5 cut(s) 288, 335, 396, 738, 1091
BseRI GAGGAG 2 cut(s) 764, 890
BseSI GKGCMC 2 cut(s) 357, 896
BseXI GCAGC 3 cut(s) 533, 805, 932
BsgI GTGCAG 3 cut(s) 393, 939, 1189
Bsh1285I CGRYCG 1 cut(s) 1257
BshFI GGCC 1 cut(s) 689
BshNI GGYRCC 2 cut(s) 352, 471
BsiEI CGRYCG 1 cut(s) 1257
BsiHKAI GWGCWC 1 cut(s) 896
BslI CCNNNNNNNGG 5 cut(s) 468, 815, 1009, 1109, 1151
BsmAI GTCTC 3 cut(s) 110, 319, 1232
BsmBI CGTCTC 2 cut(s) 319, 1232
BsnI GGCC 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 357, 896
Bsp143I GATC 3 cut(s) 5, 238, 933
Bsp19I CCATGG 1 cut(s) 1145
BspACI CCGC 3 cut(s) 95, 613, 1257
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 5 cut(s) 287, 334, 397, 739, 1090
BspLI GGNNCC 4 cut(s) 354, 473, 690, 942
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 352, 471
BssECI CCNNGG 5 cut(s) 388, 467, 724, 1003, 1145
BssMI GATC 3 cut(s) 5, 238, 933
BssT1I CCWWGG 1 cut(s) 1145
Bst2UI CCWGG 4 cut(s) 390, 798, 885, 964
Bst4CI ACNGT 3 cut(s) 490, 854, 1099
Bst6I CTCTTC 1 cut(s) 838
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstC8I GCNNGC 5 cut(s) 19, 440, 615, 638, 1047
BstDEI CTNAG 7 cut(s) 274, 321, 405, 609, 747, 1028, 1077
BstDSI CCRYGG 2 cut(s) 1003, 1145
BstEII GGTNACC 1 cut(s) 848
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 4 cut(s) 215, 598, 673, 721
BstH2I RGCGCY 2 cut(s) 970, 1145
BstHHI GCGC 3 cut(s) 426, 969, 1144
BstKTI GATC 3 cut(s) 8, 241, 936
BstMAI GTCTC 3 cut(s) 110, 319, 1232
BstMBI GATC 3 cut(s) 5, 238, 933
BstMCI CGRYCG 1 cut(s) 1257
BstMWI GCNNNNNNNGC 2 cut(s) 670, 1217
BstNI CCWGG 4 cut(s) 390, 798, 885, 964
BstNSI RCATGY 1 cut(s) 626
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 4 cut(s) 388, 796, 883, 962
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 2 cut(s) 357, 896
BstV1I GCAGC 3 cut(s) 533, 805, 932
BstV2I GAAGAC 1 cut(s) 726
BstXI CCANNNNNNTGG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 689
BtgI CCRYGG 2 cut(s) 1003, 1145
BtgZI GCGATG 1 cut(s) 1089
BtsCI GGATG 4 cut(s) 215, 598, 673, 721
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 4 cut(s) 97, 486, 894, 1085
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 5 cut(s) 19, 440, 615, 638, 1047
CfoI GCGC 3 cut(s) 426, 969, 1144
Cfr13I GGNCC 2 cut(s) 688, 1000
Csp6I GTAC 2 cut(s) 472, 754
CviAII CATG 8 cut(s) 73, 623, 776, 825, 915, 937, 1052, 1146
CviQI GTAC 2 cut(s) 472, 754
DdeI CTNAG 7 cut(s) 274, 321, 405, 609, 747, 1028, 1077
DpnI GATC 3 cut(s) 7, 240, 935
DpnII GATC 3 cut(s) 5, 238, 933
DraI TTTAAA 1 cut(s) 1228
DraIII CACNNNGTG 2 cut(s) 92, 1133
Eam1104I CTCTTC 1 cut(s) 838
EarI CTCTTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 1145
Eco47I GGWCC 1 cut(s) 1000
Eco91I GGTNACC 1 cut(s) 848
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 4 cut(s) 388, 796, 883, 962
EcoT14I CCWWGG 1 cut(s) 1145
ErhI CCWWGG 1 cut(s) 1145
Esp3I CGTCTC 2 cut(s) 319, 1232
FaeI CATG 8 cut(s) 76, 626, 779, 828, 918, 940, 1055, 1149
FatI CATG 8 cut(s) 72, 622, 775, 824, 914, 936, 1051, 1145
FauI CCCGC 1 cut(s) 606
FauNDI CATATG 2 cut(s) 694, 981
Fnu4HI GCNGC 3 cut(s) 522, 794, 921
FokI GGATG 4 cut(s) 202, 605, 660, 728
Fsp4HI GCNGC 3 cut(s) 522, 794, 921
FspBI CTAG 5 cut(s) 102, 366, 444, 764, 1264
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 3 cut(s) 425, 968, 1143
GluI GCNGC 3 cut(s) 522, 794, 921
HaeII RGCGCY 2 cut(s) 970, 1145
HaeIII GGCC 1 cut(s) 689
HhaI GCGC 3 cut(s) 426, 969, 1144
Hin1II CATG 8 cut(s) 76, 626, 779, 828, 918, 940, 1055, 1149
Hin6I GCGC 3 cut(s) 424, 967, 1142
HinP1I GCGC 3 cut(s) 424, 967, 1142
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 8 cut(s) 78, 162, 208, 407, 553, 985, 1073, 1124
HphI GGTGA 3 cut(s) 860, 1133, 1168
Hpy166II GTNNAC 3 cut(s) 862, 894, 1003
Hpy188I TCNGA 8 cut(s) 57, 277, 324, 412, 541, 728, 990, 1194
Hpy188III TCNNGA 5 cut(s) 166, 677, 769, 954, 1016
Hpy8I GTNNAC 3 cut(s) 862, 894, 1003
Hpy99I CGWCG 1 cut(s) 1255
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 3 cut(s) 490, 854, 1099
HpyCH4IV ACGT 1 cut(s) 1241
HpyCH4V TGCA 9 cut(s) 28, 45, 374, 521, 673, 894, 920, 1170, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 670, 1217
HpyF3I CTNAG 7 cut(s) 274, 321, 405, 609, 747, 1028, 1077
HpySE526I ACGT 1 cut(s) 1241
Hsp92II CATG 8 cut(s) 76, 626, 779, 828, 918, 940, 1055, 1149
HspAI GCGC 3 cut(s) 424, 967, 1142
KpnI GGTACC 1 cut(s) 475
Kzo9I GATC 3 cut(s) 5, 238, 933
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 3 cut(s) 533, 805, 932
LweI GCATC 3 cut(s) 279, 508, 682
MaeI CTAG 5 cut(s) 102, 366, 444, 764, 1264
MaeII ACGT 1 cut(s) 1241
MaeIII GTNAC 3 cut(s) 133, 478, 848
MalI GATC 3 cut(s) 7, 240, 935
MboI GATC 3 cut(s) 5, 238, 933
MboII GAAGA 7 cut(s) 218, 307, 355, 548, 731, 855, 1069
MhlI GDGCHC 2 cut(s) 357, 896
MluCI AATT 2 cut(s) 393, 1246
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 4 cut(s) 197, 455, 741, 1227
MslI CAYNNNNRTG 3 cut(s) 570, 627, 741
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 4 cut(s) 390, 798, 885, 964
MvaI CCWGG 4 cut(s) 390, 798, 885, 964
MwoI GCNNNNNNNGC 2 cut(s) 670, 1217
NcoI CCATGG 1 cut(s) 1145
NdeI CATATG 2 cut(s) 694, 981
NdeII GATC 3 cut(s) 5, 238, 933
NlaIII CATG 8 cut(s) 76, 626, 779, 828, 918, 940, 1055, 1149
NlaIV GGNNCC 4 cut(s) 354, 473, 690, 942
NmuCI GTSAC 3 cut(s) 133, 478, 848
NsbI TGCGCA 1 cut(s) 425
NspI RCATGY 1 cut(s) 626
PciI ACATGT 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 1247
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 7 cut(s) 78, 162, 208, 553, 985, 1073, 1124
PflFI GACNNNGTC 1 cut(s) 998
PkrI GCNGC 3 cut(s) 523, 795, 922
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 4 cut(s) 388, 796, 883, 962
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 4 cut(s) 388, 796, 883, 962
PspN4I GGNNCC 4 cut(s) 354, 473, 690, 942
PspPI GGNCC 2 cut(s) 688, 1000
PstI CTGCAG 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 998
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 473, 755
RsaNI GTAC 2 cut(s) 472, 754
RseI CAYNNNNRTG 3 cut(s) 570, 627, 741
SaqAI TTAA 4 cut(s) 197, 455, 741, 1227
SatI GCNGC 3 cut(s) 522, 794, 921
Sau3AI GATC 3 cut(s) 5, 238, 933
Sau96I GGNCC 2 cut(s) 688, 1000
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 4 cut(s) 390, 798, 885, 964
SduI GDGCHC 2 cut(s) 357, 896
SfaNI GCATC 3 cut(s) 279, 508, 682
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 3 cut(s) 570, 627, 741
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 2 cut(s) 393, 1246
SsiI CCGC 3 cut(s) 95, 613, 1257
SspI AATATT 1 cut(s) 514
SspMI CTAG 5 cut(s) 102, 366, 444, 764, 1264
StyD4I CCNGG 4 cut(s) 388, 796, 883, 962
StyI CCWWGG 1 cut(s) 1145
TaaI ACNGT 3 cut(s) 490, 854, 1099
TaiI ACGT 1 cut(s) 1244
TaqI TCGA 2 cut(s) 341, 1250
TasI AATT 2 cut(s) 393, 1246
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 7 cut(s) 78, 162, 208, 553, 985, 1073, 1124
Tru1I TTAA 4 cut(s) 197, 455, 741, 1227
Tru9I TTAA 4 cut(s) 197, 455, 741, 1227
TscAI CASTG 4 cut(s) 97, 493, 901, 1085
TseFI GTSAC 3 cut(s) 133, 478, 848
TseI GCWGC 3 cut(s) 521, 793, 920
Tsp45I GTSAC 3 cut(s) 133, 478, 848
TspDTI ATGAA 2 cut(s) 732, 1079
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 4 cut(s) 97, 493, 901, 1085
Tth111I GACNNNGTC 1 cut(s) 998
VneI GTGCAC 1 cut(s) 892
VpaK11BI GGWCC 1 cut(s) 1000
XagI CCTNNNNNAGG 1 cut(s) 813
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 5 cut(s) 102, 366, 444, 764, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.