FvH4_4g25920

Ribose-phosphate pyrophosphokinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27536296 .. 27539188
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25920.t1

Sequence Viewer

Length: 1188 bp
ATGGCGGCCACTGGTGCCCTCCCCTCTTCCTACCAAACCCCTAACCTCCCGCCACCTTCACTCAAATCCTCCTCCTCCTTCTCCTCCGCCGCTCTCGTCTTCATCAAACCGCACAAGAAGAACCACAACAGTATCAGGTGCGATATCACCAGCCCCAACTCTCCGGTTCATTTCTTCACCAACAACACCTCGCCGGAGCATCTTCCGGTCCCAATGGCTTCCGAATCGGCCGTCAAGAACGCCAAGAAGGTCTGCCTCTTCTACTGCGCCGAAACCAAAGAGCTCGCTCAGAAAGTCGCCGCCGAGTCCGACGGAATCGAGCTCCGCAGCATCACCTGGAGGAAATTTGCTGATGGATTCCCGAACATTTTCATTCCTAATGCTCATGCGATTCGCGGCCAACACGTGGCGTTTCTGGCGTCGTTTAATTCTCCGTCGGTGATTTTCGAGCAGCTCTCTGTGATCTATGCGTTGCCGAAGTTGTTTATAGCCTCATTCACGCTTGTGCTTCCGTTTTTTCCGACGGGGACGTCGGAGAGAATGGAGGATGAGGGAGATGTGGCCACTGCTTTCACACTGGCCAGGGCATTGTCGAATATTCCGATTTCGATGGGAGGGCCTACTAGTTTGGTTATATATGATATCCATGCCTTGCAGGAGAGGTTTTACTTTGGTGATAATATCTTACCGTGCTTTGAGAGTGGTATCCCATTGCTTAAAACTAGGCTTCAACAGCTCCCTGACTCTGACAATATATCCATTTGTTTTCCGGATGATGGTGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACGATTGTTTGTGCTAAAGTTAGGGAAGGTGACCAACGCATTGTGCGTATAAAAGAGGGAGACCCTAAAGGACGGCATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACACTGATAGAATGTCAGAAAGTTCTAGCCGCCCATGGAGCAGCAAAGATAAGCGCTTATGTAACACATGGGATTTTCCCTAATAGATCATGGGGACGCTTCAAAAGTGATAAAGGAGGGAACCCTGAGCAGGGGCTCACATACTTTTGGATTACAGATTCTTGTCCCACAACAGTGAGAGATGTGATGCACAATCCACCATTTGAAGTTCTTAGCCTTGCTGGTTCCATAGCGACTACTCTTCAAAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

396

Amino Acids

43.36

Weight (kDa)

8.08

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 85 - 198 1.2e-08 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 235 - 334 5.9e-10 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 529
AatII GACGTC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 406
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 1 cut(s) 396
AccIII TCCGGA 1 cut(s) 769
AciI CCGC 9 cut(s) 5, 50, 87, 90, 110, 300, 325, 396, 963
AcoI YGGCCR 5 cut(s) 6, 228, 397, 561, 579
AcsI RAATTY 1 cut(s) 344
AcvI CACGTG 1 cut(s) 406
AcyI GRCGYC 2 cut(s) 419, 530
AfeI AGCGCT 1 cut(s) 988
AfiI CCNNNNNNNGG 4 cut(s) 406, 776, 1063, 1064
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 5 cut(s) 731, 923, 1036, 1139, 1178
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 2 cut(s) 335, 581
AleI CACNNNNGTG 2 cut(s) 503, 1106
AluBI AGCT 5 cut(s) 283, 322, 454, 736, 805
AluI AGCT 5 cut(s) 283, 322, 454, 736, 805
Alw21I GWGCWC 2 cut(s) 285, 324
Alw26I GTCTC 1 cut(s) 873
Aor13HI TCCGGA 1 cut(s) 769
Aor51HI AGCGCT 1 cut(s) 988
AoxI GGCC 6 cut(s) 6, 228, 397, 561, 579, 617
ApeKI GCWGC 4 cut(s) 327, 451, 802, 974
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 269, 989
AspS9I GGNCC 2 cut(s) 208, 617
AsuHPI GGTGA 6 cut(s) 139, 169, 325, 451, 686, 860
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 19
BaeI ACNNNNGTAYC 2 cut(s) 115, 148
BalI TGGCCA 2 cut(s) 563, 581
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 3 cut(s) 285, 324, 1071
BbrPI CACGTG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 285, 324
BbvI GCAGC 4 cut(s) 339, 463, 814, 986
BccI CCATC 3 cut(s) 347, 604, 770
BceAI ACGGC 2 cut(s) 215, 908
BciT130I CCWGG 2 cut(s) 337, 583
BciVI GTATCC 1 cut(s) 716
BcoDI GTCTC 1 cut(s) 873
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 3 cut(s) 624, 723, 959
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 990
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 9 cut(s) 6, 90, 300, 328, 397, 452, 803, 963, 975
BlsI GCNGC 9 cut(s) 7, 91, 301, 329, 398, 453, 804, 964, 976
Bme1390I CCNGG 2 cut(s) 337, 583
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 208, 617
BmiI GGNNCC 4 cut(s) 16, 210, 1055, 1159
BmrFI CCNGG 2 cut(s) 337, 583
BmsI GCATC 3 cut(s) 208, 339, 1110
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 1059
BsaAI YACGTR 1 cut(s) 406
BsaHI GRCGYC 2 cut(s) 419, 530
BsaI GGTCTC 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 582, 967
BsaWI WCCGGW 3 cut(s) 163, 205, 769
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 776, 1063, 1064
Bse1I ACTGG 2 cut(s) 16, 582
Bse3DI GCAATG 1 cut(s) 710
BseAI TCCGGA 1 cut(s) 769
BseBI CCWGG 2 cut(s) 337, 583
BseDI CCNNGG 2 cut(s) 582, 967
BseGI GGATG 2 cut(s) 553, 778
BseLI CCNNNNNNNGG 4 cut(s) 406, 776, 1063, 1064
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 2 cut(s) 302, 1050
BseNI ACTGG 2 cut(s) 16, 582
BseRI GAGGAG 3 cut(s) 61, 64, 73
BseSI GKGCMC 1 cut(s) 19
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 4 cut(s) 339, 463, 814, 986
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 6 cut(s) 8, 230, 399, 563, 581, 619
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 285, 324
BsiSI CCGG 4 cut(s) 164, 194, 206, 770
BslFI GGGAC 4 cut(s) 194, 541, 1041, 1083
BslI CCNNNNNNNGG 4 cut(s) 406, 776, 1063, 1064
BsmAI GTCTC 1 cut(s) 873
BsmFI GGGAC 4 cut(s) 194, 541, 1041, 1083
BsnI GGCC 6 cut(s) 8, 230, 399, 563, 581, 619
Bso31I GGTCTC 1 cut(s) 873
Bsp1286I GDGCHC 4 cut(s) 19, 285, 324, 1071
Bsp13I TCCGGA 1 cut(s) 769
Bsp143I GATC 2 cut(s) 462, 1019
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 9 cut(s) 5, 50, 87, 90, 110, 300, 325, 396, 963
BspANI GGCC 6 cut(s) 8, 230, 399, 563, 581, 619
BspCNI CTCAG 2 cut(s) 301, 1051
BspEI TCCGGA 1 cut(s) 769
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 4 cut(s) 16, 210, 1055, 1159
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 873
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 710
BsrI ACTGG 2 cut(s) 16, 582
BssECI CCNNGG 2 cut(s) 582, 967
BssMI GATC 2 cut(s) 462, 1019
BssNI GRCGYC 2 cut(s) 419, 530
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 2 cut(s) 337, 583
Bst4CI ACNGT 4 cut(s) 131, 690, 1108, 1184
Bst6I CTCTTC 3 cut(s) 31, 263, 1179
BstACI GRCGYC 2 cut(s) 419, 530
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 288, 1059, 1145
BstDSI CCRYGG 1 cut(s) 967
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 2 cut(s) 553, 778
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 2 cut(s) 269, 989
BstKTI GATC 2 cut(s) 465, 1022
BstMAI GTCTC 1 cut(s) 873
BstMBI GATC 2 cut(s) 462, 1019
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 5 cut(s) 14, 416, 733, 808, 971
BstNI CCWGG 2 cut(s) 337, 583
BstNSI RCATGY 1 cut(s) 899
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 2 cut(s) 335, 581
BstSFI CTRYAG 1 cut(s) 806
BstSLI GKGCMC 1 cut(s) 19
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 4 cut(s) 339, 463, 814, 986
BstV2I GAAGAC 1 cut(s) 91
BstZI CGGCCG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 6 cut(s) 8, 230, 399, 563, 581, 619
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 2 cut(s) 553, 778
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 5 cut(s) 9, 564, 575, 935, 1113
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 2 cut(s) 269, 989
Cfr13I GGNCC 2 cut(s) 208, 617
CseI GACGC 2 cut(s) 408, 1038
CviAII CATG 7 cut(s) 386, 647, 783, 896, 968, 1001, 1023
DdeI CTNAG 3 cut(s) 288, 1059, 1145
DpnI GATC 2 cut(s) 464, 1021
DpnII GATC 2 cut(s) 462, 1019
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 5 cut(s) 6, 228, 397, 561, 579
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 31, 263, 1179
EarI CTCTTC 3 cut(s) 31, 263, 1179
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 2 cut(s) 283, 322
EclXI CGGCCG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 967
Eco24I GRGCYC 3 cut(s) 285, 324, 1071
Eco31I GGTCTC 1 cut(s) 873
Eco32I GATATC 2 cut(s) 145, 643
Eco47I GGWCC 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 988
Eco52I CGGCCG 1 cut(s) 228
Eco53kI GAGCTC 2 cut(s) 283, 322
Eco72I CACGTG 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 848
EcoICRI GAGCTC 2 cut(s) 283, 322
EcoO109I RGGNCCY 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 2 cut(s) 335, 581
EcoRV GATATC 2 cut(s) 145, 643
EcoT14I CCWWGG 1 cut(s) 967
EcoT38I GRGCYC 3 cut(s) 285, 324, 1071
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 7 cut(s) 389, 650, 786, 899, 971, 1004, 1026
FaqI GGGAC 4 cut(s) 194, 541, 1041, 1083
FatI CATG 7 cut(s) 385, 646, 782, 895, 967, 1000, 1022
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 9 cut(s) 6, 90, 300, 328, 397, 452, 803, 963, 975
FokI GGATG 2 cut(s) 560, 785
FriOI GRGCYC 3 cut(s) 285, 324, 1071
Fsp4HI GCNGC 9 cut(s) 6, 90, 300, 328, 397, 452, 803, 963, 975
FspBI CTAG 3 cut(s) 624, 723, 959
GlaI GCGC 2 cut(s) 268, 988
GluI GCNGC 9 cut(s) 6, 90, 300, 328, 397, 452, 803, 963, 975
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 6 cut(s) 8, 230, 399, 563, 581, 619
HapII CCGG 4 cut(s) 164, 194, 206, 770
HgaI GACGC 2 cut(s) 408, 1038
HhaI GCGC 2 cut(s) 269, 989
Hin1I GRCGYC 2 cut(s) 419, 530
Hin1II CATG 7 cut(s) 389, 650, 786, 899, 971, 1004, 1026
Hin6I GCGC 2 cut(s) 267, 987
HinP1I GCGC 2 cut(s) 267, 987
HinfI GANTC 7 cut(s) 224, 305, 315, 357, 391, 743, 1091
HpaII CCGG 4 cut(s) 164, 194, 206, 770
HphI GGTGA 6 cut(s) 139, 169, 325, 451, 686, 860
Hpy188I TCNGA 8 cut(s) 223, 291, 310, 522, 535, 603, 748, 951
Hpy188III TCNNGA 3 cut(s) 235, 361, 770
Hpy99I CGWCG 5 cut(s) 314, 424, 439, 526, 535
HpyAV CCTTC 4 cut(s) 66, 88, 241, 839
HpyCH4III ACNGT 4 cut(s) 131, 690, 1108, 1184
HpyCH4IV ACGT 2 cut(s) 405, 530
HpyCH4V TGCA 3 cut(s) 655, 782, 1123
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 416, 733, 808, 971
HpyF3I CTNAG 3 cut(s) 288, 1059, 1145
HpySE526I ACGT 2 cut(s) 405, 530
Hsp92I GRCGYC 2 cut(s) 419, 530
Hsp92II CATG 7 cut(s) 389, 650, 786, 899, 971, 1004, 1026
HspAI GCGC 2 cut(s) 267, 987
Kpn2I TCCGGA 1 cut(s) 769
Kzo9I GATC 2 cut(s) 462, 1019
LmnI GCTCC 4 cut(s) 196, 327, 741, 971
Lsp1109I GCAGC 4 cut(s) 339, 463, 814, 986
LweI GCATC 3 cut(s) 208, 339, 1110
MaeI CTAG 3 cut(s) 624, 723, 959
MaeII ACGT 2 cut(s) 405, 530
MaeIII GTNAC 2 cut(s) 848, 994
MalI GATC 2 cut(s) 464, 1021
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 462, 1019
MboII GAAGA 7 cut(s) 18, 91, 130, 166, 194, 250, 1166
MhlI GDGCHC 4 cut(s) 19, 285, 324, 1071
MlsI TGGCCA 2 cut(s) 563, 581
MluCI AATT 2 cut(s) 344, 427
MluNI TGGCCA 2 cut(s) 563, 581
MlyI GAGTC 2 cut(s) 314, 737
MmeI TCCRAC 3 cut(s) 333, 513, 545
Mox20I TGGCCA 2 cut(s) 563, 581
MroI TCCGGA 1 cut(s) 769
MroXI GAANNNNTTC 1 cut(s) 368
MscI TGGCCA 2 cut(s) 563, 581
MseI TTAA 2 cut(s) 426, 717
MslI CAYNNNNRTG 2 cut(s) 503, 1106
Msp20I TGGCCA 2 cut(s) 563, 581
MspI CCGG 4 cut(s) 164, 194, 206, 770
MspR9I CCNGG 2 cut(s) 337, 583
MvaI CCWGG 2 cut(s) 337, 583
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 5 cut(s) 14, 416, 733, 808, 971
NcoI CCATGG 1 cut(s) 967
NdeII GATC 2 cut(s) 462, 1019
NlaIII CATG 7 cut(s) 389, 650, 786, 899, 971, 1004, 1026
NlaIV GGNNCC 4 cut(s) 16, 210, 1055, 1159
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 848
NspI RCATGY 1 cut(s) 899
OliI CACNNNNGTG 2 cut(s) 503, 1106
PcsI WCGNNNNNNNCGW 2 cut(s) 599, 862
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 5 cut(s) 224, 315, 357, 391, 1091
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 9 cut(s) 7, 91, 301, 329, 398, 453, 804, 964, 976
PleI GAGTC 2 cut(s) 313, 737
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
PpsI GAGTC 2 cut(s) 313, 737
Ppu21I YACGTR 1 cut(s) 406
Psp124BI GAGCTC 2 cut(s) 285, 324
Psp6I CCWGG 2 cut(s) 335, 581
PspCI CACGTG 1 cut(s) 406
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 2 cut(s) 335, 581
PspN4I GGNNCC 4 cut(s) 16, 210, 1055, 1159
PspPI GGNCC 2 cut(s) 208, 617
RseI CAYNNNNRTG 2 cut(s) 503, 1106
SacI GAGCTC 2 cut(s) 285, 324
SaqAI TTAA 2 cut(s) 426, 717
SatI GCNGC 9 cut(s) 6, 90, 300, 328, 397, 452, 803, 963, 975
Sau3AI GATC 2 cut(s) 462, 1019
Sau96I GGNCC 2 cut(s) 208, 617
SchI GAGTC 2 cut(s) 314, 737
ScrFI CCNGG 2 cut(s) 337, 583
SduI GDGCHC 4 cut(s) 19, 285, 324, 1071
SfaNI GCATC 3 cut(s) 208, 339, 1110
SfcI CTRYAG 1 cut(s) 806
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 503, 1106
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 344, 427
SsiI CCGC 9 cut(s) 5, 50, 87, 90, 110, 300, 325, 396, 963
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 624, 723, 959
SstI GAGCTC 2 cut(s) 285, 324
StyD4I CCNGG 2 cut(s) 335, 581
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 4 cut(s) 131, 690, 1108, 1184
TaiI ACGT 2 cut(s) 408, 533
TaqI TCGA 4 cut(s) 318, 447, 593, 608
TasI AATT 2 cut(s) 344, 427
TauI GCSGC 5 cut(s) 8, 92, 302, 399, 965
TfiI GAWTC 5 cut(s) 224, 315, 357, 391, 1091
Tru1I TTAA 2 cut(s) 426, 717
Tru9I TTAA 2 cut(s) 426, 717
TscAI CASTG 5 cut(s) 16, 571, 582, 942, 1113
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 4 cut(s) 327, 451, 802, 974
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 4 cut(s) 91, 158, 361, 785
TspGWI ACGGA 3 cut(s) 327, 423, 501
TspRI CASTG 5 cut(s) 16, 571, 582, 942, 1113
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 899
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 3 cut(s) 624, 723, 959
ZraI GACGTC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.