Rw4G027980

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007309
Physical Location & Seq
Reverse (-)
54703043 .. 54705992
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027980.1

Sequence Viewer

Length: 1200 bp
ATGGCGGCCACTGGAGCTTTTCCGTCTTCCTACCAAAACCCTAACCTCCAATTTCCCAAACCCTTGTCCTCCTCCGCCGCTTTTGTCATCATCAAAGCACCGAGCACAAAGACGAAGAAGCACGGCACCAATAGCATCAGGTGCGAGATCACCAGCACCAACAATTGGACCGTCGAGCCGGACCCTCCGGTTCATTTCTTCAACAACAACAACTCGCCGGACCACCTTCCGGTGCGAATGGCTTCCGAGTCGGCCGTCAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGAGCTCGCTCAGAAAGTCGCCGCCGAGTCCGAGGGAATTGAGCTCCGTAGCATCACCTGGAGGAAATTTGCTGATGGATTCCCTAACATTTTCATACCTAATGCTCAAGCGATTCGCGGACGGCATGTGGCGTTTCTGGCCTCGTTTAATTCTCCGTCGGTGATTTTTGAGCAGCTCTCTGTAATCTATGCATTGCCGAAGTTGTTCATCGCCTCATTCACGCTTGTGCTTCCATTTTTTCCGACTGGGACGTCGGAGCGTATGGAGGATGAGGGAGATGTTGCCACTGCTTTCACACTGGCAAGGGCATTGTCGAATATACCGATTTCGATGGGAGGGCCGACTAGTTTGGTTATCTATGATATCCATGCCTTGCAGGAGAGGTTTTACTTTGGTGATAATATATTACCGTGTTTTGAGAGTGGTATCCCTTTGCTTAAAACTAGGCTTCAACAGCTCCCTGATTCTGACAATATAACCATTGCTTTTCCTGATGATGGCGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACGATTGTTTGTGCCAAAGTTCGGGAAGGTGACCAACGTATTGTTCGTATTAAAGAGGGAGACCCTAAGGGGCGACATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACATTGATTGAATGTCAGAAAGTTTTAGCCGCCCATGGAGCAGCAAAGATAAGTGCATATGTAACACATGGGATTTTCCCTAATAGATCATGGGAACGCTTCGGAAGTGATAAAGGAGGGAACCCTGAGCAGGGGCTGACATACTTCTGGATTACAGACTCGTGTCCCACCACAGTGAGAGATGTGATGCACAATCCACCATTTGAAGTTCTTAGCCTTGCTGGTTCCATAGCAACTACTCTTCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

399

Amino Acids

44.06

Weight (kDa)

7.16

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 90 - 203 7e-09 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 233 - 339 2.1e-10 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 544
AatII GACGTC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 411
AciI CCGC 6 cut(s) 5, 75, 78, 315, 411, 978
AcoI YGGCCR 2 cut(s) 6, 252
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 545
AfiI CCNNNNNNNGG 6 cut(s) 165, 229, 791, 855, 1078, 1079
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 6 cut(s) 202, 746, 938, 959, 1154, 1193
AhlI ACTAGT 1 cut(s) 638
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 861, 893
AleI CACNNNNGTG 2 cut(s) 518, 1121
AluBI AGCT 6 cut(s) 17, 298, 337, 469, 751, 820
AluI AGCT 6 cut(s) 17, 298, 337, 469, 751, 820
Alw21I GWGCWC 3 cut(s) 107, 300, 339
Alw26I GTCTC 2 cut(s) 281, 888
AlwNI CAGNNNCTG 1 cut(s) 1084
AoxI GGCC 4 cut(s) 6, 252, 432, 632
ApeKI GCWGC 3 cut(s) 466, 817, 989
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 2 cut(s) 241, 497
AspLEI GCGC 2 cut(s) 284, 797
AspS9I GGNCC 4 cut(s) 168, 181, 220, 632
AsuHPI GGTGA 5 cut(s) 142, 340, 466, 701, 875
AvaII GGWCC 3 cut(s) 168, 181, 220
AxyI CCTNAGG 1 cut(s) 900
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 300, 339
BauI CACGAG 1 cut(s) 1108
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 107, 300, 339
BbvI GCAGC 3 cut(s) 478, 829, 1001
BccI CCATC 3 cut(s) 362, 619, 785
BceAI ACGGC 3 cut(s) 139, 239, 431
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 731
BcoDI GTCTC 2 cut(s) 281, 888
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 2 cut(s) 639, 738
BfmI CTRYAG 1 cut(s) 821
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 7 cut(s) 6, 78, 315, 467, 818, 978, 990
BlsI GCNGC 7 cut(s) 7, 79, 316, 468, 819, 979, 991
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 3 cut(s) 168, 181, 220
BmgT120I GGNCC 4 cut(s) 168, 181, 220, 632
BmiI GGNNCC 4 cut(s) 127, 183, 1070, 1174
BmrFI CCNGG 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 3 cut(s) 144, 354, 1125
BmuI ACTGGG 1 cut(s) 549
BoxI GACNNNNGTC 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 2 cut(s) 33, 373
Bpu10I CCTNAGC 1 cut(s) 1074
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 281, 888
BsaJI CCNNGG 2 cut(s) 324, 982
BsaWI WCCGGW 2 cut(s) 187, 229
Bsc4I CCNNNNNNNGG 6 cut(s) 165, 229, 791, 855, 1078, 1079
Bse1I ACTGG 3 cut(s) 16, 544, 597
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 2 cut(s) 485, 774
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 324, 982
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 6 cut(s) 165, 229, 791, 855, 1078, 1079
BseMI GCAATG 2 cut(s) 485, 774
BseMII CTCAG 2 cut(s) 317, 1065
BseNI ACTGG 3 cut(s) 16, 544, 597
BseRI GAGGAG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 3 cut(s) 478, 829, 1001
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 8, 254, 434, 634
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 3 cut(s) 107, 300, 339
BsiSI CCGG 4 cut(s) 179, 188, 218, 230
BslFI GGGAC 2 cut(s) 556, 1098
BslI CCNNNNNNNGG 6 cut(s) 165, 229, 791, 855, 1078, 1079
BsmAI GTCTC 2 cut(s) 281, 888
BsmFI GGGAC 2 cut(s) 556, 1098
BsnI GGCC 4 cut(s) 8, 254, 434, 634
Bso31I GGTCTC 2 cut(s) 281, 888
Bsp1286I GDGCHC 3 cut(s) 107, 300, 339
Bsp143I GATC 2 cut(s) 147, 1034
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 6 cut(s) 5, 75, 78, 315, 411, 978
BspANI GGCC 4 cut(s) 8, 254, 434, 634
BspCNI CTCAG 2 cut(s) 316, 1066
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 4 cut(s) 127, 183, 1070, 1174
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 2 cut(s) 281, 888
BsrDI GCAATG 2 cut(s) 485, 774
BsrI ACTGG 3 cut(s) 16, 544, 597
BssECI CCNNGG 2 cut(s) 324, 982
BssMI GATC 2 cut(s) 147, 1034
BssNI GRCGYC 1 cut(s) 545
BssSI CACGAG 1 cut(s) 1108
BssT1I CCWWGG 1 cut(s) 982
Bst2BI CACGAG 1 cut(s) 1108
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 172, 705, 1123
Bst6I CTCTTC 2 cut(s) 278, 1194
BstACI GRCGYC 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 4 cut(s) 303, 900, 1074, 1160
BstDSI CCRYGG 1 cut(s) 982
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 2 cut(s) 284, 797
BstKTI GATC 2 cut(s) 150, 1037
BstMAI GTCTC 2 cut(s) 281, 888
BstMBI GATC 2 cut(s) 147, 1034
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 7 cut(s) 14, 132, 141, 431, 748, 823, 986
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 422, 914
BstPAI GACNNNNGTC 1 cut(s) 1110
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 821
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 478, 829, 1001
BstV2I GAAGAC 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 900
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 4 cut(s) 8, 254, 434, 634
BtgI CCRYGG 1 cut(s) 982
BtgZI GCGATG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 4 cut(s) 9, 579, 590, 1128
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 1084
CfoI GCGC 2 cut(s) 284, 797
Cfr13I GGNCC 4 cut(s) 168, 181, 220, 632
CviAII CATG 7 cut(s) 419, 662, 798, 911, 983, 1016, 1038
DdeI CTNAG 4 cut(s) 303, 900, 1074, 1160
DpnI GATC 2 cut(s) 149, 1036
DpnII GATC 2 cut(s) 147, 1034
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
EaeI YGGCCR 2 cut(s) 6, 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 278, 1194
EarI CTCTTC 2 cut(s) 278, 1194
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 298, 337
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 982
Eco24I GRGCYC 2 cut(s) 300, 339
Eco31I GGTCTC 2 cut(s) 281, 888
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 3 cut(s) 168, 181, 220
Eco52I CGGCCG 1 cut(s) 252
Eco53kI GAGCTC 2 cut(s) 298, 337
Eco81I CCTNAGG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 863
EcoICRI GAGCTC 2 cut(s) 298, 337
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 982
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 2 cut(s) 300, 339
ErhI CCWWGG 1 cut(s) 982
FaeI CATG 7 cut(s) 422, 665, 801, 914, 986, 1019, 1041
FaqI GGGAC 2 cut(s) 556, 1098
FatI CATG 7 cut(s) 418, 661, 797, 910, 982, 1015, 1037
FauNDI CATATG 1 cut(s) 1006
Fnu4HI GCNGC 7 cut(s) 6, 78, 315, 467, 818, 978, 990
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 2 cut(s) 300, 339
Fsp4HI GCNGC 7 cut(s) 6, 78, 315, 467, 818, 978, 990
FspBI CTAG 2 cut(s) 639, 738
GlaI GCGC 2 cut(s) 283, 796
GluI GCNGC 7 cut(s) 6, 78, 315, 467, 818, 978, 990
GsuI CTGGAG 2 cut(s) 33, 373
HaeIII GGCC 4 cut(s) 8, 254, 434, 634
HapII CCGG 4 cut(s) 179, 188, 218, 230
HhaI GCGC 2 cut(s) 284, 797
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 7 cut(s) 422, 665, 801, 914, 986, 1019, 1041
Hin6I GCGC 2 cut(s) 282, 795
HinP1I GCGC 2 cut(s) 282, 795
HinfI GANTC 6 cut(s) 248, 320, 372, 406, 758, 1106
HpaII CCGG 4 cut(s) 179, 188, 218, 230
HphI GGTGA 5 cut(s) 142, 340, 466, 701, 875
Hpy188I TCNGA 8 cut(s) 247, 306, 325, 537, 550, 763, 966, 1052
Hpy188III TCNNGA 4 cut(s) 259, 785, 857, 1096
Hpy99I CGWCG 3 cut(s) 176, 454, 550
HpyAV CCTTC 3 cut(s) 236, 256, 854
HpyCH4III ACNGT 3 cut(s) 172, 705, 1123
HpyCH4IV ACGT 2 cut(s) 545, 871
HpyCH4V TGCA 4 cut(s) 485, 670, 1004, 1138
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 132, 141, 431, 748, 823, 986
HpyF3I CTNAG 4 cut(s) 303, 900, 1074, 1160
HpySE526I ACGT 2 cut(s) 545, 871
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 7 cut(s) 422, 665, 801, 914, 986, 1019, 1041
HspAI GCGC 2 cut(s) 282, 795
Kzo9I GATC 2 cut(s) 147, 1034
LmnI GCTCC 5 cut(s) 14, 342, 550, 756, 986
Lsp1109I GCAGC 3 cut(s) 478, 829, 1001
LweI GCATC 3 cut(s) 144, 354, 1125
MaeI CTAG 2 cut(s) 639, 738
MaeII ACGT 2 cut(s) 545, 871
MaeIII GTNAC 2 cut(s) 863, 1009
MalI GATC 2 cut(s) 149, 1036
MboI GATC 2 cut(s) 147, 1034
MboII GAAGA 5 cut(s) 18, 127, 190, 265, 1181
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 107, 300, 339
MluCI AATT 5 cut(s) 50, 163, 330, 359, 442
MlyI GAGTC 3 cut(s) 257, 329, 1100
MmeI TCCRAC 2 cut(s) 528, 560
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 2 cut(s) 241, 497
MseI TTAA 3 cut(s) 441, 732, 885
MslI CAYNNNNRTG 2 cut(s) 518, 1121
MspI CCGG 4 cut(s) 179, 188, 218, 230
MspR9I CCNGG 1 cut(s) 352
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 7 cut(s) 14, 132, 141, 431, 748, 823, 986
NcoI CCATGG 1 cut(s) 982
NdeI CATATG 1 cut(s) 1006
NdeII GATC 2 cut(s) 147, 1034
NlaIII CATG 7 cut(s) 422, 665, 801, 914, 986, 1019, 1041
NlaIV GGNNCC 4 cut(s) 127, 183, 1070, 1174
NmeAIII GCCGAG 2 cut(s) 310, 343
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 2 cut(s) 422, 914
OliI CACNNNNGTG 2 cut(s) 518, 1121
PciI ACATGT 1 cut(s) 910
PcsI WCGNNNNNNNCGW 2 cut(s) 614, 877
PdmI GAANNNNTTC 2 cut(s) 241, 497
PfeI GAWTC 3 cut(s) 372, 406, 758
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 7 cut(s) 7, 79, 316, 468, 819, 979, 991
PleI GAGTC 3 cut(s) 256, 328, 1100
PpsI GAGTC 3 cut(s) 256, 328, 1100
PscI ACATGT 1 cut(s) 910
PshAI GACNNNNGTC 1 cut(s) 1110
Psp124BI GAGCTC 2 cut(s) 300, 339
Psp6I CCWGG 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 4 cut(s) 127, 183, 1070, 1174
PspPI GGNCC 4 cut(s) 168, 181, 220, 632
PstNI CAGNNNCTG 1 cut(s) 1084
RseI CAYNNNNRTG 2 cut(s) 518, 1121
SacI GAGCTC 2 cut(s) 300, 339
SaqAI TTAA 3 cut(s) 441, 732, 885
SatI GCNGC 7 cut(s) 6, 78, 315, 467, 818, 978, 990
Sau3AI GATC 2 cut(s) 147, 1034
Sau96I GGNCC 4 cut(s) 168, 181, 220, 632
SchI GAGTC 3 cut(s) 257, 329, 1100
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 3 cut(s) 107, 300, 339
SfaNI GCATC 3 cut(s) 144, 354, 1125
SfcI CTRYAG 1 cut(s) 821
SinI GGWCC 3 cut(s) 168, 181, 220
SmiMI CAYNNNNRTG 2 cut(s) 518, 1121
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 638
Sse9I AATT 5 cut(s) 50, 163, 330, 359, 442
SsiI CCGC 6 cut(s) 5, 75, 78, 315, 411, 978
SspMI CTAG 2 cut(s) 639, 738
SstI GAGCTC 2 cut(s) 300, 339
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 982
TaaI ACNGT 3 cut(s) 172, 705, 1123
TaiI ACGT 2 cut(s) 548, 874
TaqI TCGA 3 cut(s) 174, 608, 623
TasI AATT 5 cut(s) 50, 163, 330, 359, 442
TauI GCSGC 4 cut(s) 8, 80, 317, 980
TfiI GAWTC 3 cut(s) 372, 406, 758
Tru1I TTAA 3 cut(s) 441, 732, 885
Tru9I TTAA 3 cut(s) 441, 732, 885
TscAI CASTG 4 cut(s) 16, 586, 597, 1128
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 3 cut(s) 466, 817, 989
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 4 cut(s) 182, 376, 490, 800
TspGWI ACGGA 3 cut(s) 12, 329, 438
TspRI CASTG 4 cut(s) 16, 586, 597, 1128
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 3 cut(s) 168, 181, 220
XapI RAATTY 1 cut(s) 359
XceI RCATGY 2 cut(s) 422, 914
XmnI GAANNNNTTC 2 cut(s) 241, 497
XspI CTAG 2 cut(s) 639, 738
ZraI GACGTC 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.