Rorug04G0268300

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007309
Physical Location & Seq
Forward (+)
44093804 .. 44094415
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0268300.1

Sequence Viewer

Length: 279 bp
ATGGCAACGCAAGAAGACCCGGCAAAGCTTTGGAGGGAGCCTTTTGCTATGCTAGACAAGTACTATGGCGGGCCCACCGCCGGAGGGGGAACCAGTACTCTATTTCTTCGTCCTCATCACATACTAGCCGGAAGACCACGTCCTCAGCAGGCCGGTGTTATTAGCAGCAATGATGCAGCTCAGACGGCGAGAAAGCCCATCACTAGCGACGAGGCAGCCAAACTGTTCGGGGGTATTTTGATAACTGAATATCGTAACAAGAAACAGTATCGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

92

Amino Acids

10.1

Weight (kDa)

9.82

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 69, 78
AfaI GTAC 2 cut(s) 62, 97
AfiI CCNNNNNNNGG 2 cut(s) 80, 84
AjiI CACGTC 1 cut(s) 140
AluBI AGCT 2 cut(s) 28, 179
AluI AGCT 2 cut(s) 28, 179
AoxI GGCC 2 cut(s) 71, 150
ApaI GGGCCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 165, 176, 215
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 71, 72
AsuC2I CCSGG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 21, 139
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 177, 188, 227
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 201
BcnI CCSGG 1 cut(s) 20
BfaI CTAG 3 cut(s) 53, 125, 204
BisI GCNGC 3 cut(s) 166, 177, 216
BlsI GCNGC 3 cut(s) 167, 178, 217
BmcAI AGTACT 2 cut(s) 62, 97
Bme1390I CCNGG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 71, 72
BmiI GGNNCC 3 cut(s) 39, 73, 91
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 21, 139
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 84
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 80, 84
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 158, 194
BseNI ACTGG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 3 cut(s) 177, 188, 227
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 73, 152
BsiSI CCGG 4 cut(s) 20, 81, 129, 153
BslI CCNNNNNNNGG 2 cut(s) 80, 84
BsnI GGCC 2 cut(s) 73, 152
Bsp120I GGGCCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 2 cut(s) 69, 78
BspANI GGCC 2 cut(s) 73, 152
BspCNI CTCAG 2 cut(s) 157, 193
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 39, 73, 91
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 225, 267
BstC8I GCNNGC 2 cut(s) 71, 150
BstDEI CTNAG 2 cut(s) 144, 180
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 177, 188, 227
BstV2I GAAGAC 2 cut(s) 21, 139
BsuRI GGCC 2 cut(s) 73, 152
BtrI CACGTC 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 71, 150
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 71, 72
Csp6I GTAC 2 cut(s) 61, 96
CviJI RGCY 8 cut(s) 28, 40, 73, 128, 152, 179, 196, 218
CviKI_1 RGCY 8 cut(s) 28, 40, 73, 128, 152, 179, 196, 218
CviQI GTAC 2 cut(s) 61, 96
DdeI CTNAG 2 cut(s) 144, 180
Eco24I GRGCYC 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 75
FaiI YATR 3 cut(s) 50, 66, 122
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 166, 177, 216
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 166, 177, 216
FspBI CTAG 3 cut(s) 53, 125, 204
GlaI GCGC 1 cut(s) 274
GluI GCNGC 3 cut(s) 166, 177, 216
HaeIII GGCC 2 cut(s) 73, 152
HapII CCGG 4 cut(s) 20, 81, 129, 153
HhaI GCGC 1 cut(s) 275
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 26
HpaII CCGG 4 cut(s) 20, 81, 129, 153
Hpy188I TCNGA 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 225, 267
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 144, 180
HpySE526I ACGT 1 cut(s) 139
HspAI GCGC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 6 cut(s) 33, 94, 106, 134, 142, 166
Lsp1109I GCAGC 3 cut(s) 177, 188, 227
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 53, 125, 204
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 3 cut(s) 26, 98, 144
MhlI GDGCHC 1 cut(s) 75
MnlI CCTC 5 cut(s) 27, 77, 123, 153, 205
MspI CCGG 4 cut(s) 20, 81, 129, 153
MspR9I CCNGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 20
NlaIV GGNNCC 3 cut(s) 39, 73, 91
PflFI GACNNNGTC 1 cut(s) 138
PkrI GCNGC 3 cut(s) 167, 178, 217
PspN4I GGNNCC 3 cut(s) 39, 73, 91
PspOMI GGGCCC 1 cut(s) 71
PspPI GGNCC 2 cut(s) 71, 72
PsyI GACNNNGTC 1 cut(s) 138
RsaI GTAC 2 cut(s) 62, 97
RsaNI GTAC 2 cut(s) 61, 96
SatI GCNGC 3 cut(s) 166, 177, 216
Sau96I GGNCC 2 cut(s) 71, 72
ScaI AGTACT 2 cut(s) 62, 97
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 30, 142, 181
SfaNI GCATC 1 cut(s) 163
SsiI CCGC 2 cut(s) 69, 78
SspMI CTAG 3 cut(s) 53, 125, 204
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 225, 267
TaiI ACGT 1 cut(s) 142
TatI WGTACW 2 cut(s) 60, 95
TseI GCWGC 3 cut(s) 165, 176, 215
Tth111I GACNNNGTC 1 cut(s) 138
XspI CTAG 3 cut(s) 53, 125, 204
ZrmI AGTACT 2 cut(s) 62, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.