RchiOBHm_Chr4g0433381

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007309
Physical Location & Seq
Reverse (-)
57534971 .. 57537837
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40190

Sequence Viewer

Length: 1197 bp
ATGGCGGCCACTGGAGTTTTTCCGTCTTCCTACCAAAACCCTAACCTCCAATTTCCCAAACCCTTGTCCTCCTCCGCTGTTGTCATCATCAAAGCACCGAGCACAAAGACGAAGAAGCACAGCACCAATAGCATCAGGTGCGAGATCACCAGCACCAACAATTGGACCGTCGAGCCGGACCCTCCGGTTCATTTCTTCAACAACAACAACTCGCCGGAGCACCTTCCGGTGCGAATGGCTTCCGAATCGGCCGTCAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGAGCTCGCTCAGAAAGTCGCCGCTGAGTCCGACGGAATTGAGCTCCGTAGCATCACCTGGAGGAAATTTGCTGATGGATTCCCTAACATTTTCATACCTAATGCTCATGCGATTCGCGGACGGCATGTGGCGTTTCTGGCCTCGTTTAATTCTCCGTCGGTGATTTTTGAGCAGCTCTCTGTAATCTATGCATTGCCGAAGTTGTTCATCGCCTCATTCACGCTTGTGCTTCCATTTTTTCCGACTGGGACGTCGGAGCGTATGGAGGATGAGGGAGATGTTGCCACTGCTTTCACACTGGCAAGGGCATTGTCGAATATACCAATTTCGATGGGAGGGCCGACTAGTTTGGTTATCTATGATATCCATGCCTTGCAGGAGAGGTTTTACTTTGGTGATAATATATTACCGTGTTTTGAGAGTGGTATCCCTTTGCTTAAAACTAGGCTTCAACAGCTCCCTGATTCTGACAATATAACCATTGCTTTTCCTGATGATGGCGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACAATTGTTTGTGCCAAAGTTCGGGAAGGTGACCAACGTATTGTTCGTATTAAAGAGGGAGACCCTAAGGGACGACATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACATTGATTGAATGTCAGAAAGTTTTAGCCGCCCATGGAGCAGCAAAGATAAGTGCATATGTAACACATGGGATTTTCCCTAATAGATCATGGGAACGCTTCGGAAGTGATAAAGGAGGGAACCCTGAGCAGGGGCTGACATACTTCTGGATTACAGACTCGTGTCCCACCACAGTGAGAGATGTGATGCACAATCCACCATTTGAAGTTCTTAGCCTTGCTGGTTCCATTGCAACTACTCTTCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

398

Amino Acids

44.01

Weight (kDa)

7.19

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 89 - 202 1.2e-08 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 232 - 338 2.1e-10 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 541
AatII GACGTC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 408
AciI CCGC 5 cut(s) 5, 75, 312, 408, 975
AcoI YGGCCR 2 cut(s) 6, 249
AcsI RAATTY 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 542
AfiI CCNNNNNNNGG 5 cut(s) 162, 788, 852, 1075, 1076
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 6 cut(s) 199, 743, 935, 956, 1151, 1190
AhlI ACTAGT 1 cut(s) 635
AjnI CCWGG 1 cut(s) 347
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AleI CACNNNNGTG 2 cut(s) 515, 1118
AluBI AGCT 5 cut(s) 295, 334, 466, 748, 817
AluI AGCT 5 cut(s) 295, 334, 466, 748, 817
Alw21I GWGCWC 4 cut(s) 104, 222, 297, 336
Alw26I GTCTC 2 cut(s) 278, 885
AlwNI CAGNNNCTG 1 cut(s) 1081
AoxI GGCC 4 cut(s) 6, 249, 429, 629
ApeKI GCWGC 3 cut(s) 463, 814, 986
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 2 cut(s) 238, 494
AspLEI GCGC 2 cut(s) 281, 794
AspS9I GGNCC 3 cut(s) 165, 178, 629
AsuHPI GGTGA 5 cut(s) 139, 337, 463, 698, 872
AvaII GGWCC 2 cut(s) 165, 178
AxyI CCTNAGG 1 cut(s) 897
BanII GRGCYC 2 cut(s) 297, 336
BauI CACGAG 1 cut(s) 1105
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 4 cut(s) 104, 222, 297, 336
BbvI GCAGC 3 cut(s) 475, 826, 998
BccI CCATC 3 cut(s) 359, 616, 782
BceAI ACGGC 2 cut(s) 236, 428
BciT130I CCWGG 1 cut(s) 349
BciVI GTATCC 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 278, 885
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 2 cut(s) 636, 735
BfmI CTRYAG 1 cut(s) 818
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 6 cut(s) 6, 312, 464, 815, 975, 987
BlsI GCNGC 6 cut(s) 7, 313, 465, 816, 976, 988
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 2 cut(s) 165, 178
BmgT120I GGNCC 3 cut(s) 165, 178, 629
BmiI GGNNCC 3 cut(s) 180, 1067, 1171
BmrFI CCNGG 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 3 cut(s) 141, 351, 1122
BmuI ACTGGG 1 cut(s) 546
BoxI GACNNNNGTC 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 2 cut(s) 33, 370
Bpu10I CCTNAGC 1 cut(s) 1071
BsaHI GRCGYC 1 cut(s) 542
BsaI GGTCTC 2 cut(s) 278, 885
BsaJI CCNNGG 1 cut(s) 979
BsaWI WCCGGW 2 cut(s) 184, 226
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 788, 852, 1075, 1076
Bse1I ACTGG 3 cut(s) 16, 541, 594
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 3 cut(s) 482, 771, 1173
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 5 cut(s) 162, 788, 852, 1075, 1076
BseMI GCAATG 3 cut(s) 482, 771, 1173
BseMII CTCAG 3 cut(s) 306, 314, 1062
BseNI ACTGG 3 cut(s) 16, 541, 594
BseRI GAGGAG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 475, 826, 998
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 8, 251, 431, 631
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 4 cut(s) 104, 222, 297, 336
BsiSI CCGG 4 cut(s) 176, 185, 215, 227
BslFI GGGAC 3 cut(s) 553, 915, 1095
BslI CCNNNNNNNGG 5 cut(s) 162, 788, 852, 1075, 1076
BsmAI GTCTC 2 cut(s) 278, 885
BsmFI GGGAC 3 cut(s) 553, 915, 1095
BsnI GGCC 4 cut(s) 8, 251, 431, 631
Bso31I GGTCTC 2 cut(s) 278, 885
Bsp1286I GDGCHC 4 cut(s) 104, 222, 297, 336
Bsp143I GATC 2 cut(s) 144, 1031
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 5 cut(s) 5, 75, 312, 408, 975
BspANI GGCC 4 cut(s) 8, 251, 431, 631
BspCNI CTCAG 3 cut(s) 307, 313, 1063
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 180, 1067, 1171
BspTNI GGTCTC 2 cut(s) 278, 885
BsrDI GCAATG 3 cut(s) 482, 771, 1173
BsrI ACTGG 3 cut(s) 16, 541, 594
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 2 cut(s) 144, 1031
BssNI GRCGYC 1 cut(s) 542
BssSI CACGAG 1 cut(s) 1105
BssT1I CCWWGG 1 cut(s) 979
Bst2BI CACGAG 1 cut(s) 1105
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 3 cut(s) 169, 702, 1120
Bst6I CTCTTC 2 cut(s) 275, 1191
BstACI GRCGYC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 5 cut(s) 300, 315, 897, 1071, 1157
BstDSI CCRYGG 1 cut(s) 979
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 281, 794
BstKTI GATC 2 cut(s) 147, 1034
BstMAI GTCTC 2 cut(s) 278, 885
BstMBI GATC 2 cut(s) 144, 1031
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 6 cut(s) 129, 138, 428, 745, 820, 983
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 2 cut(s) 419, 911
BstPAI GACNNNNGTC 1 cut(s) 1107
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 818
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 475, 826, 998
BstV2I GAAGAC 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 897
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 4 cut(s) 8, 251, 431, 631
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 1 cut(s) 565
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 4 cut(s) 9, 576, 587, 1125
Cac8I GCNNGC 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 1081
CfoI GCGC 2 cut(s) 281, 794
Cfr13I GGNCC 3 cut(s) 165, 178, 629
CviAII CATG 8 cut(s) 398, 416, 659, 795, 908, 980, 1013, 1035
DdeI CTNAG 5 cut(s) 300, 315, 897, 1071, 1157
DpnI GATC 2 cut(s) 146, 1033
DpnII GATC 2 cut(s) 144, 1031
DrdI GACNNNNNNGTC 1 cut(s) 541
DseDI GACNNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 6, 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 275, 1191
EarI CTCTTC 2 cut(s) 275, 1191
Ecl136II GAGCTC 2 cut(s) 295, 334
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 979
Eco24I GRGCYC 2 cut(s) 297, 336
Eco31I GGTCTC 2 cut(s) 278, 885
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 165, 178
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 2 cut(s) 295, 334
Eco81I CCTNAGG 1 cut(s) 897
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 2 cut(s) 295, 334
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 979
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 2 cut(s) 297, 336
ErhI CCWWGG 1 cut(s) 979
FaeI CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
FaqI GGGAC 3 cut(s) 553, 915, 1095
FatI CATG 8 cut(s) 397, 415, 658, 794, 907, 979, 1012, 1034
FauNDI CATATG 1 cut(s) 1003
Fnu4HI GCNGC 6 cut(s) 6, 312, 464, 815, 975, 987
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 2 cut(s) 297, 336
Fsp4HI GCNGC 6 cut(s) 6, 312, 464, 815, 975, 987
FspBI CTAG 2 cut(s) 636, 735
GlaI GCGC 2 cut(s) 280, 793
GluI GCNGC 6 cut(s) 6, 312, 464, 815, 975, 987
GsuI CTGGAG 2 cut(s) 33, 370
HaeIII GGCC 4 cut(s) 8, 251, 431, 631
HapII CCGG 4 cut(s) 176, 185, 215, 227
HhaI GCGC 2 cut(s) 281, 794
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
Hin6I GCGC 2 cut(s) 279, 792
HinP1I GCGC 2 cut(s) 279, 792
HinfI GANTC 6 cut(s) 245, 317, 369, 403, 755, 1103
HpaII CCGG 4 cut(s) 176, 185, 215, 227
HphI GGTGA 5 cut(s) 139, 337, 463, 698, 872
Hpy188I TCNGA 8 cut(s) 244, 303, 322, 534, 547, 760, 963, 1049
Hpy188III TCNNGA 4 cut(s) 256, 782, 854, 1093
Hpy99I CGWCG 4 cut(s) 173, 326, 451, 547
HpyAV CCTTC 3 cut(s) 233, 253, 851
HpyCH4III ACNGT 3 cut(s) 169, 702, 1120
HpyCH4IV ACGT 2 cut(s) 542, 868
HpyCH4V TGCA 5 cut(s) 482, 667, 1001, 1135, 1178
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 138, 428, 745, 820, 983
HpyF3I CTNAG 5 cut(s) 300, 315, 897, 1071, 1157
HpySE526I ACGT 2 cut(s) 542, 868
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
HspAI GCGC 2 cut(s) 279, 792
Kzo9I GATC 2 cut(s) 144, 1031
LmnI GCTCC 5 cut(s) 217, 339, 547, 753, 983
Lsp1109I GCAGC 3 cut(s) 475, 826, 998
LweI GCATC 3 cut(s) 141, 351, 1122
MaeI CTAG 2 cut(s) 636, 735
MaeII ACGT 2 cut(s) 542, 868
MaeIII GTNAC 2 cut(s) 860, 1006
MalI GATC 2 cut(s) 146, 1033
MboI GATC 2 cut(s) 144, 1031
MboII GAAGA 5 cut(s) 18, 124, 187, 262, 1178
MfeI CAATTG 2 cut(s) 160, 834
MhlI GDGCHC 4 cut(s) 104, 222, 297, 336
MluCI AATT 7 cut(s) 50, 160, 327, 356, 439, 615, 834
MlyI GAGTC 2 cut(s) 326, 1097
MmeI TCCRAC 3 cut(s) 345, 525, 557
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 2 cut(s) 238, 494
MseI TTAA 3 cut(s) 438, 729, 882
MslI CAYNNNNRTG 2 cut(s) 515, 1118
MspA1I CMGCKG 2 cut(s) 77, 314
MspI CCGG 4 cut(s) 176, 185, 215, 227
MspR9I CCNGG 1 cut(s) 349
MunI CAATTG 2 cut(s) 160, 834
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 6 cut(s) 129, 138, 428, 745, 820, 983
NcoI CCATGG 1 cut(s) 979
NdeI CATATG 1 cut(s) 1003
NdeII GATC 2 cut(s) 144, 1031
NlaIII CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
NlaIV GGNNCC 3 cut(s) 180, 1067, 1171
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 2 cut(s) 419, 911
OliI CACNNNNGTG 2 cut(s) 515, 1118
PciI ACATGT 1 cut(s) 907
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PdmI GAANNNNTTC 2 cut(s) 238, 494
PfeI GAWTC 4 cut(s) 245, 369, 403, 755
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 6 cut(s) 7, 313, 465, 816, 976, 988
PleI GAGTC 2 cut(s) 325, 1097
PpsI GAGTC 2 cut(s) 325, 1097
PscI ACATGT 1 cut(s) 907
PshAI GACNNNNGTC 1 cut(s) 1107
Psp124BI GAGCTC 2 cut(s) 297, 336
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 3 cut(s) 180, 1067, 1171
PspPI GGNCC 3 cut(s) 165, 178, 629
PstNI CAGNNNCTG 1 cut(s) 1081
RseI CAYNNNNRTG 2 cut(s) 515, 1118
SacI GAGCTC 2 cut(s) 297, 336
SaqAI TTAA 3 cut(s) 438, 729, 882
SatI GCNGC 6 cut(s) 6, 312, 464, 815, 975, 987
Sau3AI GATC 2 cut(s) 144, 1031
Sau96I GGNCC 3 cut(s) 165, 178, 629
SchI GAGTC 2 cut(s) 326, 1097
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 4 cut(s) 104, 222, 297, 336
SfaNI GCATC 3 cut(s) 141, 351, 1122
SfcI CTRYAG 1 cut(s) 818
SinI GGWCC 2 cut(s) 165, 178
SmiMI CAYNNNNRTG 2 cut(s) 515, 1118
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 7 cut(s) 50, 160, 327, 356, 439, 615, 834
SsiI CCGC 5 cut(s) 5, 75, 312, 408, 975
SspMI CTAG 2 cut(s) 636, 735
SstI GAGCTC 2 cut(s) 297, 336
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 979
TaaI ACNGT 3 cut(s) 169, 702, 1120
TaiI ACGT 2 cut(s) 545, 871
TaqI TCGA 3 cut(s) 171, 605, 620
TasI AATT 7 cut(s) 50, 160, 327, 356, 439, 615, 834
TauI GCSGC 3 cut(s) 8, 314, 977
TfiI GAWTC 4 cut(s) 245, 369, 403, 755
Tru1I TTAA 3 cut(s) 438, 729, 882
Tru9I TTAA 3 cut(s) 438, 729, 882
TscAI CASTG 4 cut(s) 16, 583, 594, 1125
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 3 cut(s) 463, 814, 986
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 4 cut(s) 179, 373, 487, 797
TspGWI ACGGA 4 cut(s) 12, 326, 339, 435
TspRI CASTG 4 cut(s) 16, 583, 594, 1125
Van91I CCANNNNNTGG 1 cut(s) 162
VpaK11BI GGWCC 2 cut(s) 165, 178
XapI RAATTY 1 cut(s) 356
XceI RCATGY 2 cut(s) 419, 911
XmnI GAANNNNTTC 2 cut(s) 238, 494
XspI CTAG 2 cut(s) 636, 735
ZraI GACGTC 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.