RLG00000006758

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007309
Physical Location & Seq
Forward (+)
10235473 .. 10238016
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006758

Sequence Viewer

Length: 1212 bp
ATGGCGGCCACTGGAGCTTTTCCGTCTTCCTACCAAAACCCTAACCTCCAATTTCCCAAACCCTTGTCCTCCTCCTCCTCCTCCTCCGCCGCTTTTGTCATCATCAAAGCACCGACCACAAAGACGAAGAAGCACAGCACCAATAGCATCAGGTGCGAGATCACCAGCACCAACAATTGGACCGTCGAGCCGGACCCTCCGGTTCATTTCTTCAACAACAACTCGCCGGACCACCTTCCGGTGCCAATGGCTTCCGAATCGGCCGTCAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGAGCTCGCTCAGAAAGTCGCCGCCGAGTCCGACGGAATTGAGCTCCGTAGCATAACCTGGAGGAAATTTGCTGATGGATTCCCTAACATTTTCATACCTAATGCTCATGCGATTCGCGGACAGCATGTGGCGTTTCTGGCCTCGTTTAATTCTCCGTCGGTGATTTTTGAGCAGCTCTCTGTAATCTATGCATTGCCCAAGTTGTTCATCGCCTCATTCACGCTTGTGCTACCATTTTTTCCGACCGGGACGTCGGAGCGTATGGAGGATGAGGGAGATGTTGCCACTGCTTTCACACTGGCAAGGGCATTGTCGAATATACCGATTTCGATGGGAGGGCCGACTAGTTTGGTTATCTATGATATCCATGCCTTGCAGGAGAGGTTTTACTTTGGTGATAATATCTTGCCATGCTTTGAGAGTGGTATCCCATTGCTTAAAACTAGGCTTCAACAGCTCCCTGATTCTGACAATATAACCATTGCTTTTCCTGATGATGGCGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACGATTGTTTGTGCCAAAGTTCGGGAAGGTGACCAACGCATTGTTCGTATTAAAGAGGGAGACCCTAAGGGACGACATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACATTGATTGAATGTCAGAAAGTTTTAGCCGCCCATGGAGCAGCAAAGATAAGTGCTTATGTAACACATGGGATTTTCCCTAATAGATCATGGGAACGCTTCCGAAGTGATAAAGGAGGGAACCCTGAGCAGGGGCTGACATACTTCTGGATTACAGACTCGTGTCCCACTACAGTGAGAGATGTGATGCACAATCCACCATTTGAAGTTCTTAGCCTTGCTGGTTGCATAGCAACTACTCTTCAAATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

404

Amino Acids

44.46

Weight (kDa)

6.86

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 93 - 206 1.2e-08 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 236 - 342 1.7e-10 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 553
AatII GACGTC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 420
AciI CCGC 6 cut(s) 5, 87, 90, 324, 420, 987
AcoI YGGCCR 2 cut(s) 6, 261
AcsI RAATTY 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 554
AfiI CCNNNNNNNGG 6 cut(s) 177, 238, 800, 864, 1087, 1088
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 6 cut(s) 214, 755, 947, 968, 1163, 1202
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AleI CACNNNNGTG 2 cut(s) 527, 1130
AluBI AGCT 6 cut(s) 17, 307, 346, 478, 760, 829
AluI AGCT 6 cut(s) 17, 307, 346, 478, 760, 829
Alw21I GWGCWC 2 cut(s) 309, 348
Alw26I GTCTC 2 cut(s) 290, 897
AlwNI CAGNNNCTG 1 cut(s) 1093
AoxI GGCC 4 cut(s) 6, 261, 441, 641
ApeKI GCWGC 3 cut(s) 475, 826, 998
ApoI RAATTY 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspLEI GCGC 2 cut(s) 293, 806
AspS9I GGNCC 4 cut(s) 180, 193, 229, 641
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 4 cut(s) 154, 475, 710, 884
AvaII GGWCC 3 cut(s) 180, 193, 229
AxyI CCTNAGG 1 cut(s) 909
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 309, 348
BauI CACGAG 1 cut(s) 1117
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 309, 348
BbvI GCAGC 3 cut(s) 487, 838, 1010
BccI CCATC 3 cut(s) 371, 628, 794
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 740
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 290, 897
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 2 cut(s) 648, 747
BfmI CTRYAG 2 cut(s) 830, 1128
BfuI GTATCC 1 cut(s) 740
BisI GCNGC 7 cut(s) 6, 90, 324, 476, 827, 987, 999
BlsI GCNGC 7 cut(s) 7, 91, 325, 477, 828, 988, 1000
Bme1390I CCNGG 2 cut(s) 361, 550
Bme18I GGWCC 3 cut(s) 180, 193, 229
BmgT120I GGNCC 4 cut(s) 180, 193, 229, 641
BmiI GGNNCC 3 cut(s) 195, 243, 1079
BmrFI CCNGG 2 cut(s) 361, 550
BmsI GCATC 2 cut(s) 156, 1134
BoxI GACNNNNGTC 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 2 cut(s) 33, 382
Bpu10I CCTNAGC 1 cut(s) 1083
BpuMI CCSGG 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 2 cut(s) 290, 897
BsaJI CCNNGG 1 cut(s) 991
BsaWI WCCGGW 2 cut(s) 199, 238
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 238, 800, 864, 1087, 1088
Bse1I ACTGG 2 cut(s) 16, 606
Bse21I CCTNAGG 1 cut(s) 909
Bse3DI GCAATG 3 cut(s) 494, 734, 783
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 991
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 6 cut(s) 177, 238, 800, 864, 1087, 1088
BseMI GCAATG 3 cut(s) 494, 734, 783
BseMII CTCAG 2 cut(s) 326, 1074
BseNI ACTGG 2 cut(s) 16, 606
BseRI GAGGAG 5 cut(s) 61, 64, 67, 70, 73
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 487, 838, 1010
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 2 cut(s) 264, 549
BshFI GGCC 4 cut(s) 8, 263, 443, 643
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 2 cut(s) 264, 549
BsiHKAI GWGCWC 2 cut(s) 309, 348
BsiSI CCGG 5 cut(s) 191, 200, 227, 239, 549
BslFI GGGAC 3 cut(s) 565, 927, 1107
BslI CCNNNNNNNGG 6 cut(s) 177, 238, 800, 864, 1087, 1088
BsmAI GTCTC 2 cut(s) 290, 897
BsmFI GGGAC 3 cut(s) 565, 927, 1107
BsnI GGCC 4 cut(s) 8, 263, 443, 643
Bso31I GGTCTC 2 cut(s) 290, 897
Bsp1286I GDGCHC 2 cut(s) 309, 348
Bsp143I GATC 2 cut(s) 159, 1043
Bsp19I CCATGG 1 cut(s) 991
BspACI CCGC 6 cut(s) 5, 87, 90, 324, 420, 987
BspANI GGCC 4 cut(s) 8, 263, 443, 643
BspCNI CTCAG 2 cut(s) 325, 1075
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 3 cut(s) 195, 243, 1079
BspT107I GGYRCC 1 cut(s) 241
BspTNI GGTCTC 2 cut(s) 290, 897
BsrDI GCAATG 3 cut(s) 494, 734, 783
BsrI ACTGG 2 cut(s) 16, 606
BssECI CCNNGG 1 cut(s) 991
BssMI GATC 2 cut(s) 159, 1043
BssNI GRCGYC 1 cut(s) 554
BssSI CACGAG 1 cut(s) 1117
BssT1I CCWWGG 1 cut(s) 991
Bst2BI CACGAG 1 cut(s) 1117
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 184, 1132
Bst6I CTCTTC 2 cut(s) 287, 1203
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 312, 909, 1083, 1169
BstDSI CCRYGG 1 cut(s) 991
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 2 cut(s) 293, 806
BstKTI GATC 2 cut(s) 162, 1046
BstMAI GTCTC 2 cut(s) 290, 897
BstMBI GATC 2 cut(s) 159, 1043
BstMCI CGRYCG 2 cut(s) 264, 549
BstMWI GCNNNNNNNGC 7 cut(s) 14, 144, 153, 440, 757, 832, 995
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 2 cut(s) 431, 923
BstPAI GACNNNNGTC 1 cut(s) 1119
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 2 cut(s) 359, 548
BstSFI CTRYAG 2 cut(s) 830, 1128
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 487, 838, 1010
BstV2I GAAGAC 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 909
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 4 cut(s) 8, 263, 443, 643
BtgI CCRYGG 1 cut(s) 991
BtgZI GCGATG 1 cut(s) 496
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 4 cut(s) 9, 588, 599, 1137
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 1093
CfoI GCGC 2 cut(s) 293, 806
Cfr13I GGNCC 4 cut(s) 180, 193, 229, 641
CviAII CATG 9 cut(s) 410, 428, 671, 714, 807, 920, 992, 1025, 1047
DdeI CTNAG 4 cut(s) 312, 909, 1083, 1169
DpnI GATC 2 cut(s) 161, 1045
DpnII GATC 2 cut(s) 159, 1043
DrdI GACNNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 6, 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 287, 1203
EarI CTCTTC 2 cut(s) 287, 1203
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 2 cut(s) 307, 346
EclXI CGGCCG 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 991
Eco24I GRGCYC 2 cut(s) 309, 348
Eco31I GGTCTC 2 cut(s) 290, 897
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 3 cut(s) 180, 193, 229
Eco52I CGGCCG 1 cut(s) 261
Eco53kI GAGCTC 2 cut(s) 307, 346
Eco81I CCTNAGG 1 cut(s) 909
Eco91I GGTNACC 1 cut(s) 872
EcoICRI GAGCTC 2 cut(s) 307, 346
EcoO65I GGTNACC 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 991
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 2 cut(s) 309, 348
ErhI CCWWGG 1 cut(s) 991
FaeI CATG 9 cut(s) 413, 431, 674, 717, 810, 923, 995, 1028, 1050
FaqI GGGAC 3 cut(s) 565, 927, 1107
FatI CATG 9 cut(s) 409, 427, 670, 713, 806, 919, 991, 1024, 1046
Fnu4HI GCNGC 7 cut(s) 6, 90, 324, 476, 827, 987, 999
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 2 cut(s) 309, 348
Fsp4HI GCNGC 7 cut(s) 6, 90, 324, 476, 827, 987, 999
FspBI CTAG 2 cut(s) 648, 747
GlaI GCGC 2 cut(s) 292, 805
GluI GCNGC 7 cut(s) 6, 90, 324, 476, 827, 987, 999
GsuI CTGGAG 2 cut(s) 33, 382
HaeIII GGCC 4 cut(s) 8, 263, 443, 643
HapII CCGG 5 cut(s) 191, 200, 227, 239, 549
HhaI GCGC 2 cut(s) 293, 806
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 9 cut(s) 413, 431, 674, 717, 810, 923, 995, 1028, 1050
Hin6I GCGC 2 cut(s) 291, 804
HinP1I GCGC 2 cut(s) 291, 804
HinfI GANTC 6 cut(s) 257, 329, 381, 415, 767, 1115
HpaII CCGG 5 cut(s) 191, 200, 227, 239, 549
HphI GGTGA 4 cut(s) 154, 475, 710, 884
Hpy188I TCNGA 8 cut(s) 256, 315, 334, 546, 559, 772, 975, 1061
Hpy188III TCNNGA 4 cut(s) 268, 794, 866, 1105
Hpy99I CGWCG 4 cut(s) 188, 338, 463, 559
HpyAV CCTTC 3 cut(s) 245, 265, 863
HpyCH4III ACNGT 2 cut(s) 184, 1132
HpyCH4IV ACGT 1 cut(s) 554
HpyCH4V TGCA 4 cut(s) 494, 679, 1147, 1185
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 144, 153, 440, 757, 832, 995
HpyF3I CTNAG 4 cut(s) 312, 909, 1083, 1169
HpySE526I ACGT 1 cut(s) 554
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 9 cut(s) 413, 431, 674, 717, 810, 923, 995, 1028, 1050
HspAI GCGC 2 cut(s) 291, 804
Kzo9I GATC 2 cut(s) 159, 1043
LmnI GCTCC 5 cut(s) 14, 351, 559, 765, 995
Lsp1109I GCAGC 3 cut(s) 487, 838, 1010
LweI GCATC 2 cut(s) 156, 1134
MaeI CTAG 2 cut(s) 648, 747
MaeII ACGT 1 cut(s) 554
MaeIII GTNAC 2 cut(s) 872, 1018
MalI GATC 2 cut(s) 161, 1045
MboI GATC 2 cut(s) 159, 1043
MboII GAAGA 5 cut(s) 18, 139, 202, 274, 1190
MfeI CAATTG 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 309, 348
MluCI AATT 6 cut(s) 50, 175, 339, 368, 451, 1207
MlyI GAGTC 2 cut(s) 338, 1109
MmeI TCCRAC 3 cut(s) 357, 537, 569
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 3 cut(s) 450, 741, 894
MslI CAYNNNNRTG 2 cut(s) 527, 1130
MspI CCGG 5 cut(s) 191, 200, 227, 239, 549
MspR9I CCNGG 2 cut(s) 361, 550
MunI CAATTG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 7 cut(s) 14, 144, 153, 440, 757, 832, 995
NciI CCSGG 1 cut(s) 550
NcoI CCATGG 1 cut(s) 991
NdeII GATC 2 cut(s) 159, 1043
NlaIII CATG 9 cut(s) 413, 431, 674, 717, 810, 923, 995, 1028, 1050
NlaIV GGNNCC 3 cut(s) 195, 243, 1079
NmeAIII GCCGAG 2 cut(s) 319, 352
NmuCI GTSAC 1 cut(s) 872
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 2 cut(s) 431, 923
OliI CACNNNNGTG 2 cut(s) 527, 1130
PciI ACATGT 1 cut(s) 919
PcsI WCGNNNNNNNCGW 2 cut(s) 623, 886
PfeI GAWTC 4 cut(s) 257, 381, 415, 767
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 7 cut(s) 7, 91, 325, 477, 828, 988, 1000
PleI GAGTC 2 cut(s) 337, 1109
PpsI GAGTC 2 cut(s) 337, 1109
PscI ACATGT 1 cut(s) 919
PshAI GACNNNNGTC 1 cut(s) 1119
Psp124BI GAGCTC 2 cut(s) 309, 348
Psp6I CCWGG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 872
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 195, 243, 1079
PspPI GGNCC 4 cut(s) 180, 193, 229, 641
PstNI CAGNNNCTG 1 cut(s) 1093
RseI CAYNNNNRTG 2 cut(s) 527, 1130
SacI GAGCTC 2 cut(s) 309, 348
SaqAI TTAA 3 cut(s) 450, 741, 894
SatI GCNGC 7 cut(s) 6, 90, 324, 476, 827, 987, 999
Sau3AI GATC 2 cut(s) 159, 1043
Sau96I GGNCC 4 cut(s) 180, 193, 229, 641
SchI GAGTC 2 cut(s) 338, 1109
ScrFI CCNGG 2 cut(s) 361, 550
SduI GDGCHC 2 cut(s) 309, 348
SfaNI GCATC 2 cut(s) 156, 1134
SfcI CTRYAG 2 cut(s) 830, 1128
SinI GGWCC 3 cut(s) 180, 193, 229
SmiMI CAYNNNNRTG 2 cut(s) 527, 1130
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 6 cut(s) 50, 175, 339, 368, 451, 1207
SsiI CCGC 6 cut(s) 5, 87, 90, 324, 420, 987
SspMI CTAG 2 cut(s) 648, 747
SstI GAGCTC 2 cut(s) 309, 348
StyD4I CCNGG 2 cut(s) 359, 548
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 2 cut(s) 184, 1132
TaiI ACGT 1 cut(s) 557
TaqI TCGA 3 cut(s) 186, 617, 632
TasI AATT 6 cut(s) 50, 175, 339, 368, 451, 1207
TauI GCSGC 4 cut(s) 8, 92, 326, 989
TfiI GAWTC 4 cut(s) 257, 381, 415, 767
Tru1I TTAA 3 cut(s) 450, 741, 894
Tru9I TTAA 3 cut(s) 450, 741, 894
TscAI CASTG 4 cut(s) 16, 595, 606, 1137
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 3 cut(s) 475, 826, 998
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 4 cut(s) 194, 385, 499, 809
TspGWI ACGGA 4 cut(s) 12, 338, 351, 447
TspRI CASTG 4 cut(s) 16, 595, 606, 1137
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 3 cut(s) 180, 193, 229
XapI RAATTY 1 cut(s) 368
XceI RCATGY 2 cut(s) 431, 923
XspI CTAG 2 cut(s) 648, 747
ZraI GACGTC 1 cut(s) 555
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.