Prupe.1G247200_v2.0.a1

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007309
Physical Location & Seq
Forward (+)
25995186 .. 25998370
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G247200.2

Sequence Viewer

Length: 1212 bp
ATGGCGGCCACTCGAGCCCCTCTGTCCTCATACCAAAACCCTAGCTCCACACCCACATTGAAATCTCCTCCCAAACCCTCTTATGTCGCTTTTGAAATCAAAGCCTCGACCTTGAGGAAGAAGAAGAAACAGAACGGCATTAGGTGCGAGATCAAGAGCTTCGAGAATCCGCACAATTGGACCATCGAGCCGGATACGCCTATTCACGTCTTTCACAACCCTCCAGAAGCTCAGGTGGCAATGGCTTCCGGATCGGCAGTGAAGAAAGTGAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAGTCGCTCGCTCAGAAAGTCGCGGCTCAATCTGACGCCATTGAGCTCCGTAGCATCACTTGGAGGAAATTTGATGATGGGTTTCCCAACATATTCATACCCAATGCTCATGGCATTCGAGGACACCATGTGGCCTTTCTGGCCTCGTTTAGCTCCCCATCAGTGATTTTTGAGCAGCTCTCTGTGATCTATGCATTGCCCAAGTTGTTCATCTCCTCATTCACGCTCGTCCTTCCCTTTTTTCCCACTGGGACTTCTGAGCGTATGGAGGATGAGGGAGATGTTGCCACCGCTTTCACACTTGCCAGGGCCTTGTCAAATATACCCATTTCAATGGGAGGGCCCACTAGTTTAGTCATCTATGATATCCATGCCTTGCAGGAGAGATTTTACTTTGGTGATAATATCTTACCATGCTTTGAAAGTGGGATCCCTTTGCTCAAAAGTAGGCTGCAACAGCTCCCTGATTCTGACAATATATCCATTGCTTTTCCTGATGACGGTGCATGGAAACGATTTCATAAGCAGCTACAGCATTTCCCAACGATTGTCTGTGCTAAAGTTCGGGAAGGTGACCAACGAATTGTACGTATTAAGGAGGGAGACGCAAGAGGACGGCATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACCTTGATCGAATGCCAGAAAGTTTTAGCCGCCCATGGAGCTGCAAAAATCAGTGCTTATGTAACACATGGGATTTTTCCTAATAGATCATGGGAACGCTTTCAAAGAGATAATGGAGGGAAACCTGAGCATGGGCTGACCTACTTCTGGATTACAGACTCATGTCCACTGACAGTGAAAGATGTGATGCACAATCCACCGTTTGAAATTCTCAGCCTTGCTGGTTCTATAGCGGCTACTCTTCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

404

Amino Acids

44.67

Weight (kDa)

8.84

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 959
AccII CGCG 1 cut(s) 326
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 6 cut(s) 5, 170, 326, 594, 990, 1193
AclWI GGATC 3 cut(s) 259, 727, 740
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 371, 1167
AcyI GRCGYC 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 1 cut(s) 891
AfiI CCNNNNNNNGG 3 cut(s) 803, 1091, 1107
AgsI TTSAA 8 cut(s) 61, 95, 636, 725, 950, 1064, 1166, 1205
AhlI ACTAGT 1 cut(s) 650
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 9 cut(s) 45, 159, 230, 349, 456, 481, 763, 832, 1001
AluI AGCT 9 cut(s) 45, 159, 230, 349, 456, 481, 763, 832, 1001
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 293, 900
AlwI GGATC 3 cut(s) 259, 727, 740
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 5 cut(s) 6, 435, 444, 612, 644
ApaI GGGCCC 1 cut(s) 648
ApeKI GCWGC 4 cut(s) 478, 754, 829, 1001
ApoI RAATTY 2 cut(s) 371, 1167
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 180, 612, 644, 645
AsuHPI GGTGA 2 cut(s) 713, 887
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 648
BamHI GGATCC 1 cut(s) 732
BanI GGYRCC 1 cut(s) 959
BanII GRGCYC 3 cut(s) 19, 351, 648
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 490, 741, 841, 988
BccI CCATC 3 cut(s) 191, 374, 469
BceAI ACGGC 2 cut(s) 151, 935
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BciT130I CCWGG 1 cut(s) 610
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 293, 900
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 2 cut(s) 42, 651
BfmI CTRYAG 2 cut(s) 833, 1188
BfuI GTATCC 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 8 cut(s) 6, 327, 479, 755, 830, 990, 1002, 1194
BlsI GCNGC 8 cut(s) 7, 328, 480, 756, 831, 991, 1003, 1195
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 180, 612, 644, 645
BmiI GGNNCC 3 cut(s) 646, 734, 961
BmrFI CCNGG 1 cut(s) 610
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 2 cut(s) 366, 1137
BmuI ACTGGG 1 cut(s) 561
BoxI GACNNNNGTC 1 cut(s) 1122
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 2 cut(s) 231, 1086
BpuEI CTTGAG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 609, 994
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 803, 1091, 1107
Bse1I ACTGG 1 cut(s) 556
Bse3DI GCAATG 3 cut(s) 246, 497, 786
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 609, 994
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 3 cut(s) 803, 1091, 1107
BseMI GCAATG 3 cut(s) 246, 497, 786
BseMII CTCAG 5 cut(s) 245, 329, 552, 1077, 1186
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 2 cut(s) 57, 508
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 4 cut(s) 490, 741, 841, 988
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 5 cut(s) 8, 437, 446, 614, 646
BshNI GGYRCC 1 cut(s) 959
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 191, 249
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 803, 1091, 1107
BsmAI GTCTC 2 cut(s) 293, 900
BsmBI CGTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 2 cut(s) 417, 977
BsnI GGCC 5 cut(s) 8, 437, 446, 614, 646
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 12
Bsp120I GGGCCC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 19, 351, 648
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 6 cut(s) 5, 170, 326, 594, 990, 1193
BspANI GGCC 5 cut(s) 8, 437, 446, 614, 646
BspCNI CTCAG 5 cut(s) 244, 328, 553, 1078, 1185
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 3 cut(s) 646, 734, 961
BspPI GGATC 3 cut(s) 259, 727, 740
BspT107I GGYRCC 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 3 cut(s) 246, 497, 786
BsrI ACTGG 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 609, 994
BssMI GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 994
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 3 cut(s) 806, 1135, 1161
Bst6I CTCTTC 2 cut(s) 290, 1206
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 893
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 5 cut(s) 231, 315, 561, 1086, 1172
BstDSI CCRYGG 1 cut(s) 994
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 6 cut(s) 153, 254, 492, 735, 969, 1049
BstMAI GTCTC 2 cut(s) 293, 900
BstMBI GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
BstMWI GCNNNNNNNGC 8 cut(s) 14, 144, 196, 236, 443, 760, 835, 998
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 926
BstPAI GACNNNNGTC 1 cut(s) 1122
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 608
BstSFI CTRYAG 2 cut(s) 833, 1188
BstSLI GKGCMC 1 cut(s) 648
BstSNI TACGTA 1 cut(s) 893
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 4 cut(s) 490, 741, 841, 988
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 732
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 5 cut(s) 8, 437, 446, 614, 646
BtgI CCRYGG 1 cut(s) 994
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 6 cut(s) 264, 471, 549, 1018, 1127, 1140
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 180, 612, 644, 645
CseI GACGC 2 cut(s) 347, 917
Csp6I GTAC 1 cut(s) 890
CviQI GTAC 1 cut(s) 890
DdeI CTNAG 5 cut(s) 231, 315, 561, 1086, 1172
DpnI GATC 6 cut(s) 152, 253, 491, 734, 968, 1048
DpnII GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 290, 1206
EarI CTCTTC 2 cut(s) 290, 1206
Ecl136II GAGCTC 1 cut(s) 349
Eco105I TACGTA 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 994
Eco24I GRGCYC 3 cut(s) 19, 351, 648
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 349
EcoO109I RGGNCCY 2 cut(s) 612, 644
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 608
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 994
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 3 cut(s) 19, 351, 648
ErhI CCWWGG 1 cut(s) 994
Esp3I CGTCTC 1 cut(s) 900
FaqI GGGAC 1 cut(s) 568
Fnu4HI GCNGC 8 cut(s) 6, 327, 479, 755, 830, 990, 1002, 1194
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 3 cut(s) 19, 351, 648
Fsp4HI GCNGC 8 cut(s) 6, 327, 479, 755, 830, 990, 1002, 1194
FspBI CTAG 2 cut(s) 42, 651
GlaI GCGC 1 cut(s) 295
GluI GCNGC 8 cut(s) 6, 327, 479, 755, 830, 990, 1002, 1194
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 5 cut(s) 8, 437, 446, 614, 646
HapII CCGG 2 cut(s) 191, 249
HgaI GACGC 2 cut(s) 347, 917
HhaI GCGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 339
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 166, 770, 1118
HpaII CCGG 2 cut(s) 191, 249
HphI GGTGA 2 cut(s) 713, 887
Hpy166II GTNNAC 1 cut(s) 1127
Hpy188I TCNGA 4 cut(s) 318, 337, 562, 775
Hpy188III TCNNGA 7 cut(s) 154, 163, 224, 249, 797, 869, 1108
Hpy8I GTNNAC 1 cut(s) 1127
HpyAV CCTTC 3 cut(s) 268, 545, 866
HpyCH4III ACNGT 3 cut(s) 806, 1135, 1161
HpyCH4IV ACGT 2 cut(s) 207, 892
HpyCH4V TGCA 6 cut(s) 497, 682, 757, 809, 1004, 1150
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 144, 196, 236, 443, 760, 835, 998
HpyF3I CTNAG 5 cut(s) 231, 315, 561, 1086, 1172
HpySE526I ACGT 2 cut(s) 207, 892
Hsp92I GRCGYC 1 cut(s) 339
HspAI GCGC 1 cut(s) 294
Kpn2I TCCGGA 1 cut(s) 248
Kzo9I GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
LmnI GCTCC 5 cut(s) 50, 354, 461, 768, 998
Lsp1109I GCAGC 4 cut(s) 490, 741, 841, 988
LweI GCATC 2 cut(s) 366, 1137
MaeI CTAG 2 cut(s) 42, 651
MaeII ACGT 2 cut(s) 207, 892
MaeIII GTNAC 2 cut(s) 875, 1021
MalI GATC 6 cut(s) 152, 253, 491, 734, 968, 1048
MboI GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
MboII GAAGA 7 cut(s) 130, 133, 136, 274, 277, 283, 1193
MfeI CAATTG 1 cut(s) 175
MflI RGATCY 1 cut(s) 732
MhlI GDGCHC 3 cut(s) 19, 351, 648
MluCI AATT 4 cut(s) 175, 371, 885, 1167
MlyI GAGTC 1 cut(s) 1112
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 1059
MseI TTAA 1 cut(s) 897
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 2 cut(s) 191, 249
MspR9I CCNGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 175
Mva1269I GAATGC 2 cut(s) 417, 977
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 8 cut(s) 14, 144, 196, 236, 443, 760, 835, 998
NcoI CCATGG 1 cut(s) 994
NdeII GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
NlaIV GGNNCC 3 cut(s) 646, 734, 961
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 875
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 926
PaeR7I CTCGAG 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 889
PctI GAATGC 2 cut(s) 417, 977
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 2 cut(s) 166, 770
PflFI GACNNNGTC 1 cut(s) 304
PkrI GCNGC 8 cut(s) 7, 328, 480, 756, 831, 991, 1003, 1195
PleI GAGTC 1 cut(s) 1112
PpsI GAGTC 1 cut(s) 1112
Ppu21I YACGTR 1 cut(s) 893
PshAI GACNNNNGTC 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 608
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 646, 734, 961
PspOMI GGGCCC 1 cut(s) 644
PspPI GGNCC 4 cut(s) 180, 612, 644, 645
PspXI VCTCGAGB 1 cut(s) 12
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 1 cut(s) 891
RsaNI GTAC 1 cut(s) 890
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 8 cut(s) 6, 327, 479, 755, 830, 990, 1002, 1194
Sau3AI GATC 6 cut(s) 150, 251, 489, 732, 966, 1046
Sau96I GGNCC 4 cut(s) 180, 612, 644, 645
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 3 cut(s) 19, 351, 648
SfaNI GCATC 2 cut(s) 366, 1137
SfcI CTRYAG 2 cut(s) 833, 1188
SfiI GGCCNNNNNGGCC 1 cut(s) 443
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 12, 112
SmoI CTYRAG 2 cut(s) 12, 112
SnaBI TACGTA 1 cut(s) 893
SpeI ACTAGT 1 cut(s) 650
Sse9I AATT 4 cut(s) 175, 371, 885, 1167
SsiI CCGC 6 cut(s) 5, 170, 326, 594, 990, 1193
SspMI CTAG 2 cut(s) 42, 651
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 3 cut(s) 806, 1135, 1161
TaiI ACGT 2 cut(s) 210, 895
TaqI TCGA 6 cut(s) 13, 107, 162, 186, 421, 969
TasI AATT 4 cut(s) 175, 371, 885, 1167
TauI GCSGC 4 cut(s) 8, 329, 992, 1196
TfiI GAWTC 2 cut(s) 166, 770
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TscAI CASTG 6 cut(s) 264, 471, 556, 1018, 1134, 1140
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 4 cut(s) 478, 754, 829, 1001
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 3 cut(s) 388, 502, 812
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 6 cut(s) 264, 471, 556, 1018, 1134, 1140
Tth111I GACNNNGTC 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 2 cut(s) 371, 1167
XceI RCATGY 1 cut(s) 926
XhoI CTCGAG 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 2 cut(s) 42, 651
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.