Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007309

Physical Location & Seq

Genomic Coordinates Reverse (-)

6906325 .. 6909320

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1099000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGGCCACTCGACCTCTTCCGCCATCCTTCCAAAAACCTAACTTCCCACCCGCGCCCAAATCTCCCGATCCCTCCTCCGCCGCTTTCCACATCAAAGCCTCCAACTTTAGGAAGAAGAAGCAGAACGGCAGCAACATCATCAGGTGCGAGATCAAGAGCTTCGGCCACAACCTGACCATCGAGCCGGACTCTCCGGTTCACGTCTTCCGCGCCGCTTCCGAACCCCAATTGTCAATGGCTTCCGATTCGGCGGTGAAGAAGGCGAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGCCCTCGCCGAGAATGTCGCTGCCCAGTCCGACTCCATCGAGCTCCGCAGCATTACTTGGAGGAAATTTGATGATGGGTTTCCCAACATTTTCATACCCAATGCTCATGGAATTCGAGGGCAACATGTGGCGTTTCTCGCCTCGTTTAGCTCCCCGTCGGTGATTTTTGAGCAGCTCTCTGTGATTTATGCATTGCCCAAGTTGTTCATCTCCTCATTCACTCTGGTGCTTCCATTTTTTCCGACGGGGACTTCGGAGCGTATGGAGGATGAGGGAGATGTCGCCACCGCTTTCACGCTTGCCAGGGCCTTGTCAAACATTCCCATTTCGATGGGTGGGCCTACTAGTTTAGTTATCTATGATATCCATGCCTTGCAGGAGCGGTTTTACTTTGGTGATAATATCTTACCATGCTTTGAGAGCGGGATCCCTTTGCTCAAAAATAGGCTCCAGCAGCTCCCTGATTCCGACAATATATCCATTGCTTTTCCTGATGATGGTGCGTGGAAACGATTTCATAAGCAGCTACATCATTTCCCTACGATTGTCTGTGCTAAAGTTCGGGAAGGTGACCAACGAATTGTACGTATTAAGGAAGGAGACCCTAGAGGACGACATGTTGTGATCGTTGATGATTTGGTTCAGTCTGGTGGTACCTTGATCGAATGCCAGAAAGTTTTAGCCGCCCATGGAGCAGCAAAAATCAGCGCGTATGTAACACATGGGATCTTTCCTAATCGATCATGGGAACGCTTTCAAAGTGATTATGGAGGGCACCCGGAGCACGGGCTGACCTACTTCTGGATTACGGACTCGTGTCCAGTGACAGTGAAAGATGTGAAGAACAACCCGCCATTTGAAGTTCTTAGCCTTGCTGGTTCCATAGCGACTACTCTTCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

403

Amino Acids

44.43

Weight (kDa)

8.39

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	93 - 206	2.8e-07	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	242 - 342	1.1e-09	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10700 AT1G10700
fragaria_vesca	FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920
malus_domestica	MD13G1098100.v1.1 MD16G1099000.v1.1
prunus_persica	Prupe.1G247200_v2.0.a1 Prupe.1G247200_v2.0.a1
pyrus_communis	pycom13g08570 pycom16g08430
rosa_chinensis	RchiOBHm_Chr4g0433381
rosa_laevigata	RLG00000006758
rosa_multiflora	Rmu_sc0000759.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374930
rosa_rugosa	Rorug04G0268100.1 Rorug04G0268200 Rorug04G0268300
rosa_samantha	Rh4AG323100 Rh4BG330700 Rh4CG346100 Rh4DG327200
rosa_wichuraiana	Rw4G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	956
AccB1I	GGYRCC	2 cut(s)	956, 1077
AccBSI	CCGCTC	2 cut(s)	685, 726
AccII	CGCG	3 cut(s)	56, 213, 1013
AclWI	GGATC	4 cut(s)	65, 724, 737, 1037
AcoI	YGGCCR	2 cut(s)	6, 166
AcsI	RAATTY	2 cut(s)	368, 414
AfaI	GTAC	2 cut(s)	888, 958
AfiI	CCNNNNNNNGG	4 cut(s)	111, 800, 1088, 1104
AflIII	ACRYGT	2 cut(s)	427, 919
AgsI	TTSAA	3 cut(s)	1061, 1163, 1202
AhlI	ACTAGT	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	605
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	6 cut(s)	162, 346, 453, 478, 760, 829
AluI	AGCT	6 cut(s)	162, 346, 453, 478, 760, 829
Alw21I	GWGCWC	2 cut(s)	348, 1089
Alw26I	GTCTC	2 cut(s)	290, 897
AlwI	GGATC	4 cut(s)	65, 724, 737, 1037
AoxI	GGCC	4 cut(s)	6, 166, 609, 641
ApeKI	GCWGC	7 cut(s)	132, 323, 351, 475, 757, 826, 998
ApoI	RAATTY	2 cut(s)	368, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
Asp700I	GAANNNNTTC	1 cut(s)	1056
Asp718I	GGTACC	1 cut(s)	956
AspLEI	GCGC	4 cut(s)	58, 215, 293, 1013
AspS9I	GGNCC	2 cut(s)	609, 641
AsuC2I	CCSGG	1 cut(s)	1082
AsuHPI	GGTGA	4 cut(s)	268, 475, 710, 884
BaeGI	GKGCMC	1 cut(s)	1080
BamHI	GGATCC	1 cut(s)	729
BanI	GGYRCC	2 cut(s)	956, 1077
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	1117
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	348, 1089
BbvI	GCAGC	7 cut(s)	144, 310, 363, 487, 769, 838, 1010
BccI	CCATC	6 cut(s)	34, 188, 347, 371, 628, 794
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	1082
BcoDI	GTCTC	2 cut(s)	290, 897
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	2 cut(s)	648, 909
Bme1390I	CCNGG	2 cut(s)	607, 1082
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	609, 641
BmiI	GGNNCC	5 cut(s)	731, 752, 958, 1079, 1183
BmrFI	CCNGG	2 cut(s)	607, 1082
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BoxI	GACNNNNGTC	1 cut(s)	1119
BpiI	GAAGAC	1 cut(s)	199
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 464, 496
BpmI	CTGGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	1082
Bsa29I	ATCGAT	1 cut(s)	1042
BsaAI	YACGTR	1 cut(s)	890
BsaI	GGTCTC	2 cut(s)	290, 897
BsaJI	CCNNGG	2 cut(s)	606, 991
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 800, 1088, 1104
Bse1I	ACTGG	2 cut(s)	328, 1124
Bse3DI	GCAATG	2 cut(s)	494, 783
BseBI	CCWGG	1 cut(s)	607
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	2 cut(s)	606, 991
BseGI	GGATG	2 cut(s)	26, 577
BseLI	CCNNNNNNNGG	4 cut(s)	111, 800, 1088, 1104
BseMI	GCAATG	2 cut(s)	494, 783
BseNI	ACTGG	2 cut(s)	328, 1124
BseRI	GAGGAG	2 cut(s)	67, 505
BseSI	GKGCMC	1 cut(s)	1080
BseXI	GCAGC	7 cut(s)	144, 310, 363, 487, 769, 838, 1010
Bsh1236I	CGCG	3 cut(s)	56, 213, 1013
BshFI	GGCC	4 cut(s)	8, 168, 611, 643
BshNI	GGYRCC	2 cut(s)	956, 1077
BshVI	ATCGAT	1 cut(s)	1042
BsiHKAI	GWGCWC	2 cut(s)	348, 1089
BsiSI	CCGG	3 cut(s)	188, 197, 1082
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	4 cut(s)	111, 800, 1088, 1104
BsmAI	GTCTC	2 cut(s)	290, 897
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	974
BsnI	GGCC	4 cut(s)	8, 168, 611, 643
Bso31I	GGTCTC	2 cut(s)	290, 897
Bsp1286I	GDGCHC	3 cut(s)	348, 1080, 1089
Bsp143I	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
Bsp19I	CCATGG	1 cut(s)	991
BspANI	GGCC	4 cut(s)	8, 168, 611, 643
BspDI	ATCGAT	1 cut(s)	1042
BspFNI	CGCG	3 cut(s)	56, 213, 1013
BspLI	GGNNCC	5 cut(s)	731, 752, 958, 1079, 1183
BspPI	GGATC	4 cut(s)	65, 724, 737, 1037
BspT107I	GGYRCC	2 cut(s)	956, 1077
BspTNI	GGTCTC	2 cut(s)	290, 897
BsrBI	CCGCTC	2 cut(s)	685, 726
BsrDI	GCAATG	2 cut(s)	494, 783
BsrI	ACTGG	2 cut(s)	328, 1124
BssECI	CCNNGG	2 cut(s)	606, 991
BssMI	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
BssSI	CACGAG	1 cut(s)	1117
BssT1I	CCWWGG	1 cut(s)	991
Bst2BI	CACGAG	1 cut(s)	1117
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	1132
Bst6I	CTCTTC	3 cut(s)	24, 287, 1203
BstBAI	YACGTR	1 cut(s)	890
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	1169
BstDSI	CCRYGG	1 cut(s)	991
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	26, 577
BstFNI	CGCG	3 cut(s)	56, 213, 1013
BstHHI	GCGC	4 cut(s)	58, 215, 293, 1013
BstKTI	GATC	7 cut(s)	73, 156, 732, 930, 966, 1032, 1046
BstMAI	GTCTC	2 cut(s)	290, 897
BstMBI	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
BstMWI	GCNNNNNNNGC	5 cut(s)	440, 723, 757, 995, 1084
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	2 cut(s)	431, 923
BstPAI	GACNNNNGTC	1 cut(s)	1119
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	2 cut(s)	605, 1080
BstSLI	GKGCMC	1 cut(s)	1080
BstSNI	TACGTA	1 cut(s)	890
BstUI	CGCG	3 cut(s)	56, 213, 1013
BstV1I	GCAGC	7 cut(s)	144, 310, 363, 487, 769, 838, 1010
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	729, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	2 cut(s)	729, 1029
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	4 cut(s)	8, 168, 611, 643
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	1 cut(s)	991
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	26, 577
BtsIMutI	CAGTG	2 cut(s)	1131, 1137
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	4 cut(s)	58, 215, 293, 1013
Cfr13I	GGNCC	2 cut(s)	609, 641
ClaI	ATCGAT	1 cut(s)	1042
Csp6I	GTAC	2 cut(s)	887, 957
CviAII	CATG	8 cut(s)	410, 428, 671, 714, 920, 992, 1025, 1047
CviQI	GTAC	2 cut(s)	887, 957
DdeI	CTNAG	1 cut(s)	1169
DpnI	GATC	7 cut(s)	72, 155, 731, 929, 965, 1031, 1045
DpnII	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
EaeI	YGGCCR	2 cut(s)	6, 166
Eam1104I	CTCTTC	3 cut(s)	24, 287, 1203
EarI	CTCTTC	3 cut(s)	24, 287, 1203
EciI	GGCGGA	2 cut(s)	12, 70
Ecl136II	GAGCTC	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	991
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	2 cut(s)	290, 897
Eco32I	GATATC	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	346
Eco91I	GGTNACC	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	609
EcoO65I	GGTNACC	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	991
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	8 cut(s)	413, 431, 674, 717, 923, 995, 1028, 1050
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	8 cut(s)	409, 427, 670, 713, 919, 991, 1024, 1046
FauI	CCCGC	3 cut(s)	61, 719, 1161
FokI	GGATG	2 cut(s)	13, 584
FriOI	GRGCYC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	648, 909
GlaI	GCGC	4 cut(s)	57, 214, 292, 1012
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	4 cut(s)	8, 168, 611, 643
HapII	CCGG	3 cut(s)	188, 197, 1082
HhaI	GCGC	4 cut(s)	58, 215, 293, 1013
Hin1II	CATG	8 cut(s)	413, 431, 674, 717, 923, 995, 1028, 1050
Hin6I	GCGC	4 cut(s)	56, 213, 291, 1011
HinP1I	GCGC	4 cut(s)	56, 213, 291, 1011
HinfI	GANTC	5 cut(s)	191, 248, 335, 767, 1115
HpaII	CCGG	3 cut(s)	188, 197, 1082
HphI	GGTGA	4 cut(s)	268, 475, 710, 884
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	6 cut(s)	223, 247, 334, 546, 559, 772
Hpy188III	TCNNGA	5 cut(s)	68, 157, 794, 866, 1105
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	463, 550
HpyAV	CCTTC	5 cut(s)	40, 256, 265, 863, 893
HpyCH4III	ACNGT	1 cut(s)	1132
HpyCH4IV	ACGT	2 cut(s)	204, 889
HpyCH4V	TGCA	2 cut(s)	494, 679
HpyF10VI	GCNNNNNNNGC	5 cut(s)	440, 723, 757, 995, 1084
HpyF3I	CTNAG	1 cut(s)	1169
HpySE526I	ACGT	2 cut(s)	204, 889
Hsp92II	CATG	8 cut(s)	413, 431, 674, 717, 923, 995, 1028, 1050
HspAI	GCGC	4 cut(s)	56, 213, 291, 1011
KpnI	GGTACC	1 cut(s)	960
Kzo9I	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
LmnI	GCTCC	8 cut(s)	351, 458, 559, 682, 756, 765, 995, 1084
Lsp1109I	GCAGC	7 cut(s)	144, 310, 363, 487, 769, 838, 1010
MaeI	CTAG	2 cut(s)	648, 909
MaeII	ACGT	2 cut(s)	204, 889
MaeIII	GTNAC	3 cut(s)	872, 1018, 1126
MalI	GATC	7 cut(s)	72, 155, 731, 929, 965, 1031, 1045
MbiI	CCGCTC	2 cut(s)	685, 726
MboI	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
MboII	GAAGA	9 cut(s)	11, 127, 130, 199, 271, 274, 280, 1156, 1190
MfeI	CAATTG	1 cut(s)	230
MflI	RGATCY	2 cut(s)	729, 1029
MhlI	GDGCHC	3 cut(s)	348, 1080, 1089
MluCI	AATT	4 cut(s)	230, 368, 414, 882
MlyI	GAGTC	3 cut(s)	185, 329, 1109
MmeI	TCCRAC	4 cut(s)	129, 357, 569, 795
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	2 cut(s)	527, 632
MspI	CCGG	3 cut(s)	188, 197, 1082
MspR9I	CCNGG	2 cut(s)	607, 1082
MunI	CAATTG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	3 cut(s)	56, 213, 1013
MwoI	GCNNNNNNNGC	5 cut(s)	440, 723, 757, 995, 1084
NciI	CCSGG	1 cut(s)	1082
NcoI	CCATGG	1 cut(s)	991
NdeII	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
NlaIII	CATG	8 cut(s)	413, 431, 674, 717, 923, 995, 1028, 1050
NlaIV	GGNNCC	5 cut(s)	731, 752, 958, 1079, 1183
NmeAIII	GCCGAG	2 cut(s)	319, 337
NmuCI	GTSAC	2 cut(s)	872, 1126
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	2 cut(s)	431, 923
OliI	CACNNNNGTG	1 cut(s)	527
PciI	ACATGT	2 cut(s)	427, 919
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PctI	GAATGC	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	2 cut(s)	248, 767
PleI	GAGTC	3 cut(s)	185, 329, 1109
PpsI	GAGTC	3 cut(s)	185, 329, 1109
Ppu21I	YACGTR	1 cut(s)	890
PscI	ACATGT	2 cut(s)	427, 919
PshAI	GACNNNNGTC	1 cut(s)	1119
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	605
PspEI	GGTNACC	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	5 cut(s)	731, 752, 958, 1079, 1183
PspPI	GGNCC	2 cut(s)	609, 641
PsuI	RGATCY	2 cut(s)	729, 1029
RsaI	GTAC	2 cut(s)	888, 958
RsaNI	GTAC	2 cut(s)	887, 957
RseI	CAYNNNNRTG	2 cut(s)	527, 632
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	894
Sau3AI	GATC	7 cut(s)	70, 153, 729, 927, 963, 1029, 1043
Sau96I	GGNCC	2 cut(s)	609, 641
SchI	GAGTC	3 cut(s)	185, 329, 1109
ScrFI	CCNGG	2 cut(s)	607, 1082
SduI	GDGCHC	3 cut(s)	348, 1080, 1089
SmiMI	CAYNNNNRTG	2 cut(s)	527, 632
SnaBI	TACGTA	1 cut(s)	890
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	4 cut(s)	230, 368, 414, 882
SspMI	CTAG	2 cut(s)	648, 909
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	605, 1080
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	1 cut(s)	1132
TaiI	ACGT	2 cut(s)	207, 892
TaqI	TCGA	7 cut(s)	13, 183, 342, 418, 632, 966, 1042
TasI	AATT	4 cut(s)	230, 368, 414, 882
TauI	GCSGC	4 cut(s)	8, 86, 218, 989
TfiI	GAWTC	2 cut(s)	248, 767
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	2 cut(s)	1131, 1137
TseFI	GTSAC	2 cut(s)	872, 1126
TseI	GCWGC	7 cut(s)	132, 323, 351, 475, 757, 826, 998
Tsp45I	GTSAC	2 cut(s)	872, 1126
TspDTI	ATGAA	3 cut(s)	385, 499, 809
TspGWI	ACGGA	1 cut(s)	1127
TspRI	CASTG	2 cut(s)	1131, 1137
XapI	RAATTY	2 cut(s)	368, 414
XceI	RCATGY	2 cut(s)	431, 923
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	2 cut(s)	648, 909
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.