Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000759.1

Orthogroup ID

OG0007309

Physical Location & Seq

Genomic Coordinates Forward (+)

45859 .. 48250

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000759.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggcggccactggagcttttccgtcttcctaccaaaaccctaacctccaatttcccaaacccttgtcctcctccgctgcttttgccatcatcaaagcaccgagcacaaagacgaagaagcacggcaccaatagcattaggtgcgagatcaccagcaccaacaattggaccgtcgagccggaccctccggttcatttcttcaacaacaacaactcgccggaccaccttccggtgcgaatggcttccgagtcggccgtcaagaaggtctgcctcttctactgcgccgagaccaaagagctcgctcagaaagtcgccgccgagtccgagggaattgagctccgtagcatcacctggaggaaatttgctgatggattccctaacattttcatacctaatgctcatgcgattcgcggacggcatgtggcgtttctggcctcgtttaattctccgtcggtgatttttgagcagctctctgtaatctatgcattgccgaagttgttcatcgcctcattcacgcttgtgcttccattttttccgactgggacgtcggagcgtatggaggatgagggagatgttgccactgctttcacactggcaagggcattgtcgaatataccgatttcgatgggagggccgactagtttggttatctatgatatccatgccttgcaggagaggttttactttggtgataatatattaccgtgttttgagagtggcatccctttgcttaaaactaggcttcaacagctccctgattctgacaatataaccattgcttttcctgatgatggcgcatggaaacgatttcataagcagctacagcacttcccaacgattgtttgtgccaaagttcgggaaggtgaccaacgtattgttcgtattaaagagggagaccctaagggacgacatgttgtgattgttgatgatttggttcaatctggtggcacattgattgaatgtcagaaagttttagccgcccatggagcagcaaagataagtgcatatgtaacacatgggattttccctaatagatcatgggaacgcttcggaagtgataaaggagggaaacctgagcaggggctgacatacttctggattacagactcgtgtcccaccacagtgagagatgtgatgcacaatccaccatttgaagttcttagccttgctggttccatagcaactactcttcaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

399

Amino Acids

44.05

Weight (kDa)

7.66

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10700 AT1G10700
fragaria_vesca	FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920
malus_domestica	MD13G1098100.v1.1 MD16G1099000.v1.1
prunus_persica	Prupe.1G247200_v2.0.a1 Prupe.1G247200_v2.0.a1
pyrus_communis	pycom13g08570 pycom16g08430
rosa_chinensis	RchiOBHm_Chr4g0433381
rosa_laevigata	RLG00000006758
rosa_multiflora	Rmu_sc0000759.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374930
rosa_rugosa	Rorug04G0268100.1 Rorug04G0268200 Rorug04G0268300
rosa_samantha	Rh4AG323100 Rh4BG330700 Rh4CG346100 Rh4DG327200
rosa_wichuraiana	Rw4G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
AatII	GACGTC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccII	CGCG	1 cut(s)	411
AciI	CCGC	5 cut(s)	5, 75, 315, 411, 978
AcoI	YGGCCR	2 cut(s)	6, 252
AcsI	RAATTY	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	545
AfiI	CCNNNNNNNGG	5 cut(s)	165, 229, 791, 855, 1079
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	6 cut(s)	202, 746, 938, 959, 1154, 1193
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	861, 893
AleI	CACNNNNGTG	2 cut(s)	518, 1121
AluBI	AGCT	6 cut(s)	17, 298, 337, 469, 751, 820
AluI	AGCT	6 cut(s)	17, 298, 337, 469, 751, 820
Alw21I	GWGCWC	3 cut(s)	107, 300, 339
Alw26I	GTCTC	2 cut(s)	281, 888
AlwNI	CAGNNNCTG	1 cut(s)	1084
AoxI	GGCC	4 cut(s)	6, 252, 432, 632
ApeKI	GCWGC	4 cut(s)	77, 466, 817, 989
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	2 cut(s)	241, 497
AspLEI	GCGC	2 cut(s)	284, 797
AspS9I	GGNCC	4 cut(s)	168, 181, 220, 632
AsuHPI	GGTGA	5 cut(s)	142, 340, 466, 701, 875
AvaII	GGWCC	3 cut(s)	168, 181, 220
AxyI	CCTNAGG	1 cut(s)	900
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	300, 339
BauI	CACGAG	1 cut(s)	1108
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	3 cut(s)	107, 300, 339
BbvI	GCAGC	4 cut(s)	64, 478, 829, 1001
BccI	CCATC	4 cut(s)	95, 362, 619, 785
BceAI	ACGGC	3 cut(s)	139, 239, 431
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	281, 888
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	639, 738
BfmI	CTRYAG	1 cut(s)	821
BisI	GCNGC	7 cut(s)	6, 78, 315, 467, 818, 978, 990
BlsI	GCNGC	7 cut(s)	7, 79, 316, 468, 819, 979, 991
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	3 cut(s)	168, 181, 220
BmgT120I	GGNCC	4 cut(s)	168, 181, 220, 632
BmiI	GGNNCC	3 cut(s)	127, 183, 1174
BmrFI	CCNGG	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	354, 729, 1125
BmuI	ACTGGG	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	1110
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	2 cut(s)	33, 373
Bpu10I	CCTNAGC	1 cut(s)	1074
BsaHI	GRCGYC	1 cut(s)	545
BsaI	GGTCTC	2 cut(s)	281, 888
BsaJI	CCNNGG	2 cut(s)	324, 982
BsaWI	WCCGGW	2 cut(s)	187, 229
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 229, 791, 855, 1079
Bse1I	ACTGG	3 cut(s)	16, 544, 597
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	485, 774
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	324, 982
BseGI	GGATG	2 cut(s)	568, 720
BseLI	CCNNNNNNNGG	5 cut(s)	165, 229, 791, 855, 1079
BseMI	GCAATG	2 cut(s)	485, 774
BseMII	CTCAG	2 cut(s)	317, 1065
BseNI	ACTGG	3 cut(s)	16, 544, 597
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	64, 478, 829, 1001
Bsh1236I	CGCG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	8, 254, 434, 634
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	3 cut(s)	107, 300, 339
BsiSI	CCGG	4 cut(s)	179, 188, 218, 230
BslFI	GGGAC	3 cut(s)	556, 918, 1098
BslI	CCNNNNNNNGG	5 cut(s)	165, 229, 791, 855, 1079
BsmAI	GTCTC	2 cut(s)	281, 888
BsmFI	GGGAC	3 cut(s)	556, 918, 1098
BsnI	GGCC	4 cut(s)	8, 254, 434, 634
Bso31I	GGTCTC	2 cut(s)	281, 888
Bsp1286I	GDGCHC	3 cut(s)	107, 300, 339
Bsp143I	GATC	2 cut(s)	147, 1034
Bsp19I	CCATGG	1 cut(s)	982
BspACI	CCGC	5 cut(s)	5, 75, 315, 411, 978
BspANI	GGCC	4 cut(s)	8, 254, 434, 634
BspCNI	CTCAG	2 cut(s)	316, 1066
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	127, 183, 1174
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	2 cut(s)	281, 888
BsrDI	GCAATG	2 cut(s)	485, 774
BsrI	ACTGG	3 cut(s)	16, 544, 597
BssECI	CCNNGG	2 cut(s)	324, 982
BssMI	GATC	2 cut(s)	147, 1034
BssNI	GRCGYC	1 cut(s)	545
BssSI	CACGAG	1 cut(s)	1108
BssT1I	CCWWGG	1 cut(s)	982
Bst2BI	CACGAG	1 cut(s)	1108
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	3 cut(s)	172, 705, 1123
Bst6I	CTCTTC	2 cut(s)	278, 1194
BstACI	GRCGYC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	303, 900, 1074, 1160
BstDSI	CCRYGG	1 cut(s)	982
BstEII	GGTNACC	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	568, 720
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	284, 797
BstKTI	GATC	2 cut(s)	150, 1037
BstMAI	GTCTC	2 cut(s)	281, 888
BstMBI	GATC	2 cut(s)	147, 1034
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 83, 132, 141, 431, 748, 823, 986
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	2 cut(s)	422, 914
BstPAI	GACNNNNGTC	1 cut(s)	1110
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	4 cut(s)	64, 478, 829, 1001
BstV2I	GAAGAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	4 cut(s)	8, 254, 434, 634
BtgI	CCRYGG	1 cut(s)	982
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	568, 720
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	4 cut(s)	9, 579, 590, 1128
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	1084
CfoI	GCGC	2 cut(s)	284, 797
Cfr13I	GGNCC	4 cut(s)	168, 181, 220, 632
CviAII	CATG	8 cut(s)	401, 419, 662, 798, 911, 983, 1016, 1038
DdeI	CTNAG	4 cut(s)	303, 900, 1074, 1160
DpnI	GATC	2 cut(s)	149, 1036
DpnII	GATC	2 cut(s)	147, 1034
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	2 cut(s)	6, 252
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	278, 1194
EarI	CTCTTC	2 cut(s)	278, 1194
Ecl136II	GAGCTC	2 cut(s)	298, 337
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	982
Eco24I	GRGCYC	2 cut(s)	300, 339
Eco31I	GGTCTC	2 cut(s)	281, 888
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	3 cut(s)	168, 181, 220
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	2 cut(s)	298, 337
Eco81I	CCTNAGG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	863
EcoICRI	GAGCTC	2 cut(s)	298, 337
EcoO65I	GGTNACC	1 cut(s)	863
EcoRII	CCWGG	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	2 cut(s)	300, 339
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	8 cut(s)	404, 422, 665, 801, 914, 986, 1019, 1041
FaqI	GGGAC	3 cut(s)	556, 918, 1098
FatI	CATG	8 cut(s)	400, 418, 661, 797, 910, 982, 1015, 1037
FauNDI	CATATG	1 cut(s)	1006
Fnu4HI	GCNGC	7 cut(s)	6, 78, 315, 467, 818, 978, 990
FokI	GGATG	2 cut(s)	575, 707
FriOI	GRGCYC	2 cut(s)	300, 339
Fsp4HI	GCNGC	7 cut(s)	6, 78, 315, 467, 818, 978, 990
FspBI	CTAG	2 cut(s)	639, 738
GlaI	GCGC	2 cut(s)	283, 796
GluI	GCNGC	7 cut(s)	6, 78, 315, 467, 818, 978, 990
GsuI	CTGGAG	2 cut(s)	33, 373
HaeIII	GGCC	4 cut(s)	8, 254, 434, 634
HapII	CCGG	4 cut(s)	179, 188, 218, 230
HhaI	GCGC	2 cut(s)	284, 797
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	8 cut(s)	404, 422, 665, 801, 914, 986, 1019, 1041
Hin6I	GCGC	2 cut(s)	282, 795
HinP1I	GCGC	2 cut(s)	282, 795
HinfI	GANTC	6 cut(s)	248, 320, 372, 406, 758, 1106
HpaII	CCGG	4 cut(s)	179, 188, 218, 230
HphI	GGTGA	5 cut(s)	142, 340, 466, 701, 875
Hpy188I	TCNGA	8 cut(s)	247, 306, 325, 537, 550, 763, 966, 1052
Hpy188III	TCNNGA	4 cut(s)	259, 785, 857, 1096
Hpy99I	CGWCG	3 cut(s)	176, 454, 550
HpyAV	CCTTC	3 cut(s)	236, 256, 854
HpyCH4III	ACNGT	3 cut(s)	172, 705, 1123
HpyCH4IV	ACGT	2 cut(s)	545, 871
HpyCH4V	TGCA	4 cut(s)	485, 670, 1004, 1138
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 83, 132, 141, 431, 748, 823, 986
HpyF3I	CTNAG	4 cut(s)	303, 900, 1074, 1160
HpySE526I	ACGT	2 cut(s)	545, 871
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	8 cut(s)	404, 422, 665, 801, 914, 986, 1019, 1041
HspAI	GCGC	2 cut(s)	282, 795
Kzo9I	GATC	2 cut(s)	147, 1034
LmnI	GCTCC	5 cut(s)	14, 342, 550, 756, 986
Lsp1109I	GCAGC	4 cut(s)	64, 478, 829, 1001
LweI	GCATC	3 cut(s)	354, 729, 1125
MaeI	CTAG	2 cut(s)	639, 738
MaeII	ACGT	2 cut(s)	545, 871
MaeIII	GTNAC	2 cut(s)	863, 1009
MalI	GATC	2 cut(s)	149, 1036
MboI	GATC	2 cut(s)	147, 1034
MboII	GAAGA	5 cut(s)	18, 127, 190, 265, 1181
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	3 cut(s)	107, 300, 339
MluCI	AATT	5 cut(s)	50, 163, 330, 359, 442
MlyI	GAGTC	3 cut(s)	257, 329, 1100
MmeI	TCCRAC	2 cut(s)	528, 560
Mph1103I	ATGCAT	1 cut(s)	487
MroXI	GAANNNNTTC	2 cut(s)	241, 497
MseI	TTAA	3 cut(s)	441, 732, 885
MslI	CAYNNNNRTG	2 cut(s)	518, 1121
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	4 cut(s)	179, 188, 218, 230
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	8 cut(s)	14, 83, 132, 141, 431, 748, 823, 986
NcoI	CCATGG	1 cut(s)	982
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	2 cut(s)	147, 1034
NlaIII	CATG	8 cut(s)	404, 422, 665, 801, 914, 986, 1019, 1041
NlaIV	GGNNCC	3 cut(s)	127, 183, 1174
NmeAIII	GCCGAG	2 cut(s)	310, 343
NmuCI	GTSAC	1 cut(s)	863
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	2 cut(s)	422, 914
OliI	CACNNNNGTG	2 cut(s)	518, 1121
PciI	ACATGT	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	2 cut(s)	614, 877
PdmI	GAANNNNTTC	2 cut(s)	241, 497
PfeI	GAWTC	3 cut(s)	372, 406, 758
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	7 cut(s)	7, 79, 316, 468, 819, 979, 991
PleI	GAGTC	3 cut(s)	256, 328, 1100
PpsI	GAGTC	3 cut(s)	256, 328, 1100
PscI	ACATGT	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	1110
Psp124BI	GAGCTC	2 cut(s)	300, 339
Psp6I	CCWGG	1 cut(s)	350
PspEI	GGTNACC	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	127, 183, 1174
PspPI	GGNCC	4 cut(s)	168, 181, 220, 632
PstNI	CAGNNNCTG	1 cut(s)	1084
RseI	CAYNNNNRTG	2 cut(s)	518, 1121
SacI	GAGCTC	2 cut(s)	300, 339
SaqAI	TTAA	3 cut(s)	441, 732, 885
SatI	GCNGC	7 cut(s)	6, 78, 315, 467, 818, 978, 990
Sau3AI	GATC	2 cut(s)	147, 1034
Sau96I	GGNCC	4 cut(s)	168, 181, 220, 632
SchI	GAGTC	3 cut(s)	257, 329, 1100
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	3 cut(s)	107, 300, 339
SfaNI	GCATC	3 cut(s)	354, 729, 1125
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	3 cut(s)	168, 181, 220
SmiMI	CAYNNNNRTG	2 cut(s)	518, 1121
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	50, 163, 330, 359, 442
SsiI	CCGC	5 cut(s)	5, 75, 315, 411, 978
SspMI	CTAG	2 cut(s)	639, 738
SstI	GAGCTC	2 cut(s)	300, 339
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	3 cut(s)	172, 705, 1123
TaiI	ACGT	2 cut(s)	548, 874
TaqI	TCGA	3 cut(s)	174, 608, 623
TasI	AATT	5 cut(s)	50, 163, 330, 359, 442
TauI	GCSGC	3 cut(s)	8, 317, 980
TfiI	GAWTC	3 cut(s)	372, 406, 758
Tru1I	TTAA	3 cut(s)	441, 732, 885
Tru9I	TTAA	3 cut(s)	441, 732, 885
TscAI	CASTG	4 cut(s)	16, 586, 597, 1128
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	4 cut(s)	77, 466, 817, 989
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	4 cut(s)	182, 376, 490, 800
TspGWI	ACGGA	3 cut(s)	12, 329, 438
TspRI	CASTG	4 cut(s)	16, 586, 597, 1128
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	3 cut(s)	168, 181, 220
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	2 cut(s)	422, 914
XmnI	GAANNNNTTC	2 cut(s)	241, 497
XspI	CTAG	2 cut(s)	639, 738
ZraI	GACGTC	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.