Rh4BG330700

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007309
Physical Location & Seq
Reverse (-)
49590252 .. 49592980
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG330700.1

Sequence Viewer

Length: 1131 bp
ATGGCGGCCACTGGAGCTTTTCCGTCTTCTTACCAAAACCCGAACCTCCAATTTCCCAAACCCTTGTCCTCCTCCGCCGCTTTTGTCATCATCAAAGCACCGAGCACAAAGACGAAGAAGCACAGCACCAATAGCATCAGGTGCGAGATCACCAGCACCAACAATTGGACCGTCGAGCCGGACCCTCCGGTTCATTTCTTCAACAACAACTCGCCGGACCACCTTCGGGTGCCAATGGCTTCCGAATCGGCCGTCAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGAGCTCGCTCAGAAAGTCGCCGCCGAGTCCGACGGAATTGAGCTCCGTAGCATCACCTGGAGGAAATTTGCTGATGGATTCCCTAACATTTTCATACCTAATGCTCATGCGATTCGCGGACAGCATGTGGCGTTTCTGGCCTCGTTTAATTCTCCGTCGGTGATTTTTGAGCAGCTCTCTGTAATCTATGCATTGCCCAAGTTGTTCATCGCCTCATTCACGCTTGTGCTTCCATTTTTTCCGACTGGGACGTCGGAGCGTATGGAGGATGAGGGAGATGTTGCCACTGCTTTCACACTGGCAAGGGCATTGTCGAATATACCGATTTCGATGGGAGGGCCGACTAGTTTGGTTATCTATGACATCCATGCCTTGCAGGAGAGGTTTTACTTTGGCGATAATATCTTACCGTGCTTTGAGAGTGGTATCCCATTGCTTAAAACTAGGCTTCAACAGCTTCCTGATTCTGACAATGTAACCATTGCTTTTCCTGATGATGGTGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACTATTGTTTGTGCCAAAGTTCGGGAAGGTGACCAACGCATTGTTCGTATTAAAGAGGGAGACCCTAAAGGACGGCATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACATTGATTGAATGTCAGAAAGTTTTAGCCGCCCATGGAGCAGGAAAGATAAGTGCTTATGTAACACATGGGATTTTCCCTAATAGATCATGGGAACGCTTCGGAAGTGATAAAGGAGGTATTACATTCTATACTACTTCCTTTTGCTCCTTTTGCCTCTGGTGTTTTATTGCTTTTCTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

376

Amino Acids

41.66

Weight (kDa)

8.04

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 89 - 202 1e-08 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 232 - 338 1.1e-09 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 541
AatII GACGTC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 408
AciI CCGC 6 cut(s) 5, 75, 78, 312, 408, 975
AcoI YGGCCR 2 cut(s) 6, 249
AcsI RAATTY 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 165, 226, 788, 852
AgsI TTSAA 4 cut(s) 202, 743, 935, 956
AhlI ACTAGT 1 cut(s) 635
AjnI CCWGG 1 cut(s) 347
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 6 cut(s) 17, 295, 334, 466, 748, 817
AluI AGCT 6 cut(s) 17, 295, 334, 466, 748, 817
Alw21I GWGCWC 3 cut(s) 107, 297, 336
Alw26I GTCTC 2 cut(s) 278, 885
AoxI GGCC 4 cut(s) 6, 249, 429, 629
ApeKI GCWGC 2 cut(s) 463, 814
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 4 cut(s) 168, 181, 217, 629
AsuHPI GGTGA 4 cut(s) 142, 337, 463, 872
AvaII GGWCC 3 cut(s) 168, 181, 217
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 2 cut(s) 297, 336
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 107, 297, 336
BbvI GCAGC 2 cut(s) 475, 826
BccI CCATC 3 cut(s) 359, 616, 782
BceAI ACGGC 2 cut(s) 236, 920
BciT130I CCWGG 1 cut(s) 349
BciVI GTATCC 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 278, 885
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 2 cut(s) 636, 735
BfmI CTRYAG 1 cut(s) 818
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 6 cut(s) 6, 78, 312, 464, 815, 975
BlsI GCNGC 6 cut(s) 7, 79, 313, 465, 816, 976
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 3 cut(s) 168, 181, 217
BmgT120I GGNCC 4 cut(s) 168, 181, 217, 629
BmiI GGNNCC 2 cut(s) 183, 231
BmrFI CCNGG 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 144, 351
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 2 cut(s) 33, 370
BsaHI GRCGYC 1 cut(s) 542
BsaI GGTCTC 2 cut(s) 278, 885
BsaJI CCNNGG 1 cut(s) 979
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 226, 788, 852
Bse1I ACTGG 3 cut(s) 16, 541, 594
Bse3DI GCAATG 3 cut(s) 482, 722, 771
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 2 cut(s) 565, 654
BseLI CCNNNNNNNGG 4 cut(s) 165, 226, 788, 852
BseMI GCAATG 3 cut(s) 482, 722, 771
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 3 cut(s) 16, 541, 594
BseRI GAGGAG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 475, 826
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 8, 251, 431, 631
BshNI GGYRCC 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 3 cut(s) 107, 297, 336
BsiSI CCGG 3 cut(s) 179, 188, 215
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 4 cut(s) 165, 226, 788, 852
BsmAI GTCTC 2 cut(s) 278, 885
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 4 cut(s) 8, 251, 431, 631
Bso31I GGTCTC 2 cut(s) 278, 885
Bsp1286I GDGCHC 3 cut(s) 107, 297, 336
Bsp143I GATC 2 cut(s) 147, 1031
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 6 cut(s) 5, 75, 78, 312, 408, 975
BspANI GGCC 4 cut(s) 8, 251, 431, 631
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 183, 231
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 278, 885
BsrDI GCAATG 3 cut(s) 482, 722, 771
BsrI ACTGG 3 cut(s) 16, 541, 594
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 2 cut(s) 147, 1031
BssNI GRCGYC 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 979
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 172, 702
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 979
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 2 cut(s) 565, 654
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 150, 1034
BstMAI GTCTC 2 cut(s) 278, 885
BstMBI GATC 2 cut(s) 147, 1031
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 8 cut(s) 14, 132, 141, 428, 745, 820, 983, 1098
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 2 cut(s) 419, 911
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 818
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 475, 826
BstV2I GAAGAC 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 4 cut(s) 8, 251, 431, 631
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 565, 654
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 9, 576, 587
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 4 cut(s) 168, 181, 217, 629
CviAII CATG 8 cut(s) 398, 416, 659, 795, 908, 980, 1013, 1035
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 149, 1033
DpnII GATC 2 cut(s) 147, 1031
DrdI GACNNNNNNGTC 1 cut(s) 541
DseDI GACNNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 6, 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 295, 334
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 979
Eco24I GRGCYC 2 cut(s) 297, 336
Eco31I GGTCTC 2 cut(s) 278, 885
Eco47I GGWCC 3 cut(s) 168, 181, 217
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 2 cut(s) 295, 334
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 2 cut(s) 295, 334
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 979
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 2 cut(s) 297, 336
ErhI CCWWGG 1 cut(s) 979
FaeI CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
FaqI GGGAC 1 cut(s) 553
FatI CATG 8 cut(s) 397, 415, 658, 794, 907, 979, 1012, 1034
Fnu4HI GCNGC 6 cut(s) 6, 78, 312, 464, 815, 975
FokI GGATG 2 cut(s) 572, 641
FriOI GRGCYC 2 cut(s) 297, 336
Fsp4HI GCNGC 6 cut(s) 6, 78, 312, 464, 815, 975
FspBI CTAG 2 cut(s) 636, 735
GlaI GCGC 1 cut(s) 280
GluI GCNGC 6 cut(s) 6, 78, 312, 464, 815, 975
GsuI CTGGAG 2 cut(s) 33, 370
HaeIII GGCC 4 cut(s) 8, 251, 431, 631
HapII CCGG 3 cut(s) 179, 188, 215
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 5 cut(s) 245, 317, 369, 403, 755
HpaII CCGG 3 cut(s) 179, 188, 215
HphI GGTGA 4 cut(s) 142, 337, 463, 872
Hpy188I TCNGA 8 cut(s) 244, 303, 322, 534, 547, 760, 963, 1049
Hpy188III TCNNGA 4 cut(s) 256, 752, 782, 854
Hpy99I CGWCG 4 cut(s) 176, 326, 451, 547
HpyAV CCTTC 3 cut(s) 233, 253, 851
HpyCH4III ACNGT 2 cut(s) 172, 702
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 3 cut(s) 482, 667, 794
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 132, 141, 428, 745, 820, 983, 1098
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 147, 1031
LmnI GCTCC 5 cut(s) 14, 339, 547, 983, 1097
Lsp1109I GCAGC 2 cut(s) 475, 826
LweI GCATC 2 cut(s) 144, 351
MaeI CTAG 2 cut(s) 636, 735
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 3 cut(s) 766, 860, 1006
MalI GATC 2 cut(s) 149, 1033
MboI GATC 2 cut(s) 147, 1031
MboII GAAGA 4 cut(s) 18, 127, 190, 262
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 107, 297, 336
MluCI AATT 5 cut(s) 50, 163, 327, 356, 439
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 3 cut(s) 345, 525, 557
Mph1103I ATGCAT 1 cut(s) 484
MseI TTAA 3 cut(s) 438, 729, 882
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 3 cut(s) 179, 188, 215
MspR9I CCNGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 8 cut(s) 14, 132, 141, 428, 745, 820, 983, 1098
NcoI CCATGG 1 cut(s) 979
NdeII GATC 2 cut(s) 147, 1031
NlaIII CATG 8 cut(s) 401, 419, 662, 798, 911, 983, 1016, 1038
NlaIV GGNNCC 2 cut(s) 183, 231
NmeAIII GCCGAG 2 cut(s) 307, 340
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 2 cut(s) 419, 911
OliI CACNNNNGTG 1 cut(s) 515
PcsI WCGNNNNNNNCGW 2 cut(s) 611, 874
PfeI GAWTC 4 cut(s) 245, 369, 403, 755
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 6 cut(s) 7, 79, 313, 465, 816, 976
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp124BI GAGCTC 2 cut(s) 297, 336
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 183, 231
PspPI GGNCC 4 cut(s) 168, 181, 217, 629
RseI CAYNNNNRTG 1 cut(s) 515
SacI GAGCTC 2 cut(s) 297, 336
SaqAI TTAA 3 cut(s) 438, 729, 882
SatI GCNGC 6 cut(s) 6, 78, 312, 464, 815, 975
Sau3AI GATC 2 cut(s) 147, 1031
Sau96I GGNCC 4 cut(s) 168, 181, 217, 629
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 3 cut(s) 107, 297, 336
SfaNI GCATC 2 cut(s) 144, 351
SfcI CTRYAG 1 cut(s) 818
SinI GGWCC 3 cut(s) 168, 181, 217
SmiMI CAYNNNNRTG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 5 cut(s) 50, 163, 327, 356, 439
SsiI CCGC 6 cut(s) 5, 75, 78, 312, 408, 975
SspMI CTAG 2 cut(s) 636, 735
SstI GAGCTC 2 cut(s) 297, 336
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 979
TaaI ACNGT 2 cut(s) 172, 702
TaiI ACGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 174, 605, 620
TasI AATT 5 cut(s) 50, 163, 327, 356, 439
TauI GCSGC 4 cut(s) 8, 80, 314, 977
TfiI GAWTC 4 cut(s) 245, 369, 403, 755
Tru1I TTAA 3 cut(s) 438, 729, 882
Tru9I TTAA 3 cut(s) 438, 729, 882
TscAI CASTG 3 cut(s) 16, 583, 594
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 2 cut(s) 463, 814
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 4 cut(s) 182, 373, 487, 797
TspGWI ACGGA 4 cut(s) 12, 326, 339, 435
TspRI CASTG 3 cut(s) 16, 583, 594
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 3 cut(s) 168, 181, 217
XapI RAATTY 1 cut(s) 356
XceI RCATGY 2 cut(s) 419, 911
XspI CTAG 2 cut(s) 636, 735
ZraI GACGTC 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.