Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007309

Physical Location & Seq

Genomic Coordinates Reverse (-)

63531328 .. 63534207

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG323100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGCCACTGGAGTTTTTCCGTCTTCCTACCAAAACCCTAACCTCCAATTTCCCAAACCCTTGTCCTCCTCCGCTTTTGTCATCATCAAAGCACCGAGCACAAAGACGAAGAAGCACAGCACCAATAGCATCAGGTGCGAGATCACCAGCACCAACAATTGGACCGTCGAGCCGGACCCTCCGGTTCATTTCTTCAACAACAACAACTCGCCGGAGCACCTTCCGGTGCGAATGGCTTCCGAATCGGCCGTCAAGAAGGTCTGCCTCTTCTACTGCGCCGAGACCAAAGAGCTCGCTCAGAAAGTCGCCGCCGAGTCCGACGGAATTGAGCTCCGTAGCATCACCTGGAGGAAATTTGCTGATGGATTCCCTAACATTTTCATACCTAATGCTCATGCGATTCGCGGACGGCATGTGGCGTTTCTGTCCTCGTTTAATTCTCCGTCGGTGATTTTTGAGCAGCTCTCTGTAATCTATGCATTGCCGAAGTTGTTCATCGCCTCATTCACGCTTGTGCTTCCATTTTTTCCGACTGGGACGTCGGAGCGTATGGAGGATGAGGGAGATGTTGCCACTGCTTTCACACTGGCAAGGGCATTGTCGAATATACCGATTTCGATGGGAGGGCCGACTAGTTTGGTTATCTATGATATCCATGCCTTGCAGGAGAGGTTTTACTTTGGTGATAATATATTACCGTGTTTTGAGAGTGGTATCCCTTTGCTTAAAACTAGGCTTCAACAGCTCCCTGATTCTGACAATATAACCATTGCTTTTCCTGATGATGGCGCATGGAAACGATTTCATAAGCAGCTACAGCACTTCCCAACGATTGTTTGTGCCAAAGTTCGGGAAGGTGACCAACGTATTGTTCGTATTAAAGAGGGAGACCCTAAGGGACGACATGTTGTGATTGTTGATGATTTGGTTCAATCTGGTGGCACATTGATTGAATGTCAGGTATCCAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

325

Amino Acids

36.1

Weight (kDa)

7.67

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	89 - 202	6.6e-09	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	232 - 319	4.7e-07	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10700 AT1G10700
fragaria_vesca	FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920 FvH4_4g25920
malus_domestica	MD13G1098100.v1.1 MD16G1099000.v1.1
prunus_persica	Prupe.1G247200_v2.0.a1 Prupe.1G247200_v2.0.a1
pyrus_communis	pycom13g08570 pycom16g08430
rosa_chinensis	RchiOBHm_Chr4g0433381
rosa_laevigata	RLG00000006758
rosa_multiflora	Rmu_sc0000759.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374930
rosa_rugosa	Rorug04G0268100.1 Rorug04G0268200 Rorug04G0268300
rosa_samantha	Rh4AG323100 Rh4BG330700 Rh4CG346100 Rh4DG327200
rosa_wichuraiana	Rw4G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	541
AatII	GACGTC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccII	CGCG	1 cut(s)	408
AciI	CCGC	4 cut(s)	5, 75, 312, 408
AcoI	YGGCCR	2 cut(s)	6, 249
AcsI	RAATTY	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	162, 788, 852
AflIII	ACRYGT	1 cut(s)	907
AgsI	TTSAA	4 cut(s)	199, 743, 935, 956
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	5 cut(s)	295, 334, 466, 748, 817
AluI	AGCT	5 cut(s)	295, 334, 466, 748, 817
Alw21I	GWGCWC	4 cut(s)	104, 222, 297, 336
Alw26I	GTCTC	2 cut(s)	278, 885
AoxI	GGCC	3 cut(s)	6, 249, 629
ApeKI	GCWGC	2 cut(s)	463, 814
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	2 cut(s)	238, 494
AspLEI	GCGC	2 cut(s)	281, 794
AspS9I	GGNCC	3 cut(s)	165, 178, 629
AsuHPI	GGTGA	5 cut(s)	139, 337, 463, 698, 872
AvaII	GGWCC	2 cut(s)	165, 178
AxyI	CCTNAGG	1 cut(s)	897
BanII	GRGCYC	2 cut(s)	297, 336
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	4 cut(s)	104, 222, 297, 336
BbvI	GCAGC	2 cut(s)	475, 826
BccI	CCATC	3 cut(s)	359, 616, 782
BceAI	ACGGC	2 cut(s)	236, 428
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	2 cut(s)	728, 976
BcoDI	GTCTC	2 cut(s)	278, 885
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	2 cut(s)	636, 735
BfmI	CTRYAG	1 cut(s)	818
BfuI	GTATCC	2 cut(s)	728, 976
BisI	GCNGC	4 cut(s)	6, 312, 464, 815
BlsI	GCNGC	4 cut(s)	7, 313, 465, 816
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	2 cut(s)	165, 178
BmgT120I	GGNCC	3 cut(s)	165, 178, 629
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	349
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	141, 351
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	2 cut(s)	33, 370
BsaHI	GRCGYC	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	278, 885
BsaWI	WCCGGW	2 cut(s)	184, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 788, 852
Bse1I	ACTGG	3 cut(s)	16, 541, 594
Bse21I	CCTNAGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	482, 771
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	162, 788, 852
BseMI	GCAATG	2 cut(s)	482, 771
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	16, 541, 594
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	475, 826
Bsh1236I	CGCG	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	8, 251, 631
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	4 cut(s)	104, 222, 297, 336
BsiSI	CCGG	4 cut(s)	176, 185, 215, 227
BslFI	GGGAC	2 cut(s)	553, 915
BslI	CCNNNNNNNGG	3 cut(s)	162, 788, 852
BsmAI	GTCTC	2 cut(s)	278, 885
BsmFI	GGGAC	2 cut(s)	553, 915
BsnI	GGCC	3 cut(s)	8, 251, 631
Bso31I	GGTCTC	2 cut(s)	278, 885
Bsp1286I	GDGCHC	4 cut(s)	104, 222, 297, 336
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	4 cut(s)	5, 75, 312, 408
BspANI	GGCC	3 cut(s)	8, 251, 631
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	180
BspTNI	GGTCTC	2 cut(s)	278, 885
BsrDI	GCAATG	2 cut(s)	482, 771
BsrI	ACTGG	3 cut(s)	16, 541, 594
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	169, 702
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	300, 897
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	281, 794
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	278, 885
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 138, 745, 820
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	419, 911
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	818
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	475, 826
BstV2I	GAAGAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	897
BsuI	GTATCC	2 cut(s)	728, 976
BsuRI	GGCC	3 cut(s)	8, 251, 631
BtgZI	GCGATG	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	3 cut(s)	9, 576, 587
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	2 cut(s)	281, 794
Cfr13I	GGNCC	3 cut(s)	165, 178, 629
CviAII	CATG	5 cut(s)	398, 416, 659, 795, 908
DdeI	CTNAG	2 cut(s)	300, 897
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DrdI	GACNNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	6, 249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	295, 334
EclXI	CGGCCG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	297, 336
Eco31I	GGTCTC	2 cut(s)	278, 885
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	2 cut(s)	165, 178
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	2 cut(s)	295, 334
Eco81I	CCTNAGG	1 cut(s)	897
Eco91I	GGTNACC	1 cut(s)	860
EcoICRI	GAGCTC	2 cut(s)	295, 334
EcoO65I	GGTNACC	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	655
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	297, 336
FaeI	CATG	5 cut(s)	401, 419, 662, 798, 911
FaqI	GGGAC	2 cut(s)	553, 915
FatI	CATG	5 cut(s)	397, 415, 658, 794, 907
Fnu4HI	GCNGC	4 cut(s)	6, 312, 464, 815
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	2 cut(s)	297, 336
Fsp4HI	GCNGC	4 cut(s)	6, 312, 464, 815
FspBI	CTAG	2 cut(s)	636, 735
GlaI	GCGC	2 cut(s)	280, 793
GluI	GCNGC	4 cut(s)	6, 312, 464, 815
GsuI	CTGGAG	2 cut(s)	33, 370
HaeIII	GGCC	3 cut(s)	8, 251, 631
HapII	CCGG	4 cut(s)	176, 185, 215, 227
HhaI	GCGC	2 cut(s)	281, 794
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	401, 419, 662, 798, 911
Hin6I	GCGC	2 cut(s)	279, 792
HinP1I	GCGC	2 cut(s)	279, 792
HinfI	GANTC	5 cut(s)	245, 317, 369, 403, 755
HpaII	CCGG	4 cut(s)	176, 185, 215, 227
HphI	GGTGA	5 cut(s)	139, 337, 463, 698, 872
Hpy188I	TCNGA	6 cut(s)	244, 303, 322, 534, 547, 760
Hpy188III	TCNNGA	4 cut(s)	256, 782, 854, 975
Hpy99I	CGWCG	4 cut(s)	173, 326, 451, 547
HpyAV	CCTTC	3 cut(s)	233, 253, 851
HpyCH4III	ACNGT	2 cut(s)	169, 702
HpyCH4IV	ACGT	2 cut(s)	542, 868
HpyCH4V	TGCA	2 cut(s)	482, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 138, 745, 820
HpyF3I	CTNAG	2 cut(s)	300, 897
HpySE526I	ACGT	2 cut(s)	542, 868
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	401, 419, 662, 798, 911
HspAI	GCGC	2 cut(s)	279, 792
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	4 cut(s)	217, 339, 547, 753
Lsp1109I	GCAGC	2 cut(s)	475, 826
LweI	GCATC	2 cut(s)	141, 351
MaeI	CTAG	2 cut(s)	636, 735
MaeII	ACGT	2 cut(s)	542, 868
MaeIII	GTNAC	1 cut(s)	860
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	18, 124, 187, 262
MfeI	CAATTG	1 cut(s)	160
MhlI	GDGCHC	4 cut(s)	104, 222, 297, 336
MluCI	AATT	5 cut(s)	50, 160, 327, 356, 439
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	345, 525, 557
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	2 cut(s)	238, 494
MseI	TTAA	3 cut(s)	438, 729, 882
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	4 cut(s)	176, 185, 215, 227
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	129, 138, 745, 820
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	5 cut(s)	401, 419, 662, 798, 911
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	2 cut(s)	307, 340
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	2 cut(s)	419, 911
OliI	CACNNNNGTG	1 cut(s)	515
PciI	ACATGT	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	2 cut(s)	611, 874
PdmI	GAANNNNTTC	2 cut(s)	238, 494
PfeI	GAWTC	4 cut(s)	245, 369, 403, 755
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	7, 313, 465, 816
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	907
Psp124BI	GAGCTC	2 cut(s)	297, 336
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	165, 178, 629
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	2 cut(s)	297, 336
SaqAI	TTAA	3 cut(s)	438, 729, 882
SatI	GCNGC	4 cut(s)	6, 312, 464, 815
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	3 cut(s)	165, 178, 629
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	4 cut(s)	104, 222, 297, 336
SfaNI	GCATC	2 cut(s)	141, 351
SfcI	CTRYAG	1 cut(s)	818
SinI	GGWCC	2 cut(s)	165, 178
SmiMI	CAYNNNNRTG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	5 cut(s)	50, 160, 327, 356, 439
SsiI	CCGC	4 cut(s)	5, 75, 312, 408
SspMI	CTAG	2 cut(s)	636, 735
SstI	GAGCTC	2 cut(s)	297, 336
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	169, 702
TaiI	ACGT	2 cut(s)	545, 871
TaqI	TCGA	3 cut(s)	171, 605, 620
TasI	AATT	5 cut(s)	50, 160, 327, 356, 439
TauI	GCSGC	2 cut(s)	8, 314
TfiI	GAWTC	4 cut(s)	245, 369, 403, 755
Tru1I	TTAA	3 cut(s)	438, 729, 882
Tru9I	TTAA	3 cut(s)	438, 729, 882
TscAI	CASTG	3 cut(s)	16, 583, 594
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	463, 814
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	4 cut(s)	179, 373, 487, 797
TspGWI	ACGGA	4 cut(s)	12, 326, 339, 435
TspRI	CASTG	3 cut(s)	16, 583, 594
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	165, 178
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	2 cut(s)	419, 911
XmnI	GAANNNNTTC	2 cut(s)	238, 494
XspI	CTAG	2 cut(s)	636, 735
ZraI	GACGTC	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.